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220 commits

Author SHA1 Message Date
artoscinote
f68d724202
Rework experiment permissions [SCI-6054] (#3538) 
* Rework experiment permissions [SCI-6054]
 2021-09-30 11:32:11 +02:00
Oleksii Kriuchykhin
0762323337 Update/implement permission checks in the project related controllers [SCI-6042] 2021-09-15 14:39:47 +02:00
Martin Artnik
7e6ca3be8a Merge branch 'develop' into features/new_permissions 2021-09-06 10:33:32 +02:00
Oleksii Kriuchykhin
4665743d02 Allow project management to it's creator if project has no assigned users [SCI-5663] 2021-08-26 16:56:21 +02:00
Martin Artnik
5c4f923854 Corrected type for 'assignment' activities [SCI-5662] 2021-07-29 10:13:28 +02:00
Martin Artnik
67f4e81a3a Merge branch 'develop' into features/new_permissions 2021-07-28 15:16:47 +02:00
Oleksii Kriuchykhin
c26dcf4b23 Replace empty? with blank? [SCI-5579] 2021-07-23 11:56:28 +02:00
Martin Artnik
c43e1cfbe5 Fixed db error during build 2021-07-20 10:20:47 +02:00
artoscinote
3a281ce9dc
Merge pull request #3433 from artoscinote/ma_SCI_5607 
Also send notification to the user that was unassigned from task [SCI-5607]
 2021-07-20 09:41:46 +02:00
artoscinote
5f9c04844f
Added prefixed IDs to repository rows (items) [SCI-5909] (#3441) 
* Added prefixed IDs to repository rows (items) [SCI-5909]

* Fix prefixed id queries to work with joins, use subquery in repository search [SCI-5909]

* Fixed accessing repository_row parent code [SCI-5909]

* Better handling of repository_row code display [SCI-5909]

* Fix index warning for id prefixed models issue setting up project [SCI-5909]
 2021-07-19 14:23:36 +02:00
Martin Artnik
1985b7a7e0 Also send task unassign notification to the person that was unassigned [SCI-5607] 2021-07-13 12:11:49 +02:00
Oleksii Kriuchykhin
d1208bad0b Merge branch 'develop' into features/new_permissions 2021-07-07 13:44:36 +02:00
Martin Artnik
e1b0b65465 Improved code style, fixed bug [SCI-5828] 2021-06-29 15:57:23 +02:00
Martin Artnik
eaa713f5b8 Fix indices [SCI-5829] 2021-06-22 12:51:25 +02:00
zmagoD
ad10befcc4 add new manage access permission to PET levels 2021-06-19 17:17:57 +02:00
zmagoD
ddaa4b4c57 replase user_projects with user_assignment where the permissions are calculated 2021-06-06 10:29:01 +02:00
zmagoD
784e43e328 create user_assignments for all child objects when the user is attached to the project 2021-06-06 09:54:47 +02:00
Oleksii Kriuchykhin
29c83ffbb1 Merge branch 'develop' into features/new-reports 2021-05-21 11:04:17 +02:00
zmagoD
5ee38966a0 Merge branch 'features/new_permissions' of https://github.com/biosistemika/scinote-web into new_perimssions-managing-project-ui 2021-05-11 08:36:39 +02:00
zmagoD
c0eb38b564 Merge branch 'develop' of https://github.com/biosistemika/scinote-web into features/new_permissions 2021-05-08 10:33:43 +02:00
zmagoD
331a68e9b6 fix new experiment creation 2021-05-08 10:05:22 +02:00
Oleksii Kriuchykhin
b67f2a21f5 Add default settings to existing reports [SCI-5619][SCI-5672] 2021-05-06 17:33:58 +02:00
Oleksii Kriuchykhin
67302da968 Add settings to reports [SCI-5612] 2021-04-08 17:40:16 +02:00
miha
11284d3b87 [SCI-5577] filter notifications 2021-03-29 09:52:57 +02:00
Urban Rotnik
ab1477997a Update variables name 2021-03-09 14:50:14 +01:00
Urban Rotnik
1bb2393655 Use translations 
SCI-4140
 2021-02-25 11:59:26 +01:00
Urban Rotnik
347f208480 Bring back old notifications 
SCI-4140
 2021-02-25 11:59:14 +01:00
Oleksii Kriuchykhin
49194d1a45 Prepare initial user roles in the database [SCI-5435] 2021-02-22 11:58:40 +01:00
Oleksii Kriuchykhin
3b90225c5a Add new permission checking logic [SCI-5436] 2021-02-22 11:55:48 +01:00
Oleksii Kriuchykhin
58cce0f153 Improve task restoring and refactor flash messages [SCI-5341] 2021-01-04 17:00:23 +01:00
Oleksii Kriuchykhin
94b6c96e48 Remove the 'Archived tasks' tab and refactor sidebar to include archived [SCI-5273] 2020-12-12 22:46:30 +01:00
Oleksii Kriuchykhin
e456661a98 Fix task archiving and moving [SCI-5030] 2020-09-17 17:15:41 +02:00
Urban Rotnik
462fb12a41 Update SQL query 2020-09-17 13:30:27 +02:00
Urban Rotnik
777afd0e9b Add improved search for smart annotations 2020-09-17 13:19:52 +02:00
Mojca Lorber
6e8062179c Implement archiving and restoring of whole inventories 2020-06-18 18:07:23 +02:00
Urban Rotnik
26db4f3515 Add Archive and Restore service 2020-06-09 18:50:36 +02:00
Urban Rotnik
1fe1b782f1 Fix for user filter in task activity page 2020-04-30 09:20:29 +02:00
Oleksii Kriuchykhin
7b82e33eb6 Fix repository filtering and improve speed [SCI-4224] 2020-01-13 16:09:07 +01:00
Urban Rotnik
728823ed65 fixup! Fix for numeric item in SQL array 2020-01-10 09:46:25 +01:00
Urban Rotnik
39593b6342 Fix for numeric item in SQL array 2020-01-09 11:24:38 +01:00
Oleksii Kriuchykhin
d9b9243da7 Merge branch 'develop' into features/new-column-types 2020-01-07 16:03:33 +01:00
Urban Rotnik
c15bcf0769 Add search support for numeric 2020-01-06 10:12:11 +01:00
Oleksii Kriuchykhin
7a89cae56f Fix TinyMCE images and avatars for export all [SCI-4107] 2019-12-05 13:27:17 +01:00
Urban Rotnik
0dc1daa7c6 Add gem Down, File size validation before and during download 2019-11-18 14:28:19 +01:00
aignatov-bio
b1f9e7f1ca Fix global activities jsonb field [SCI-3830] (#2030) 
* Fix global activities jsonb field

* Fix tests
 2019-11-18 13:59:54 +01:00
Urban Rotnik
169a381629
Merge pull request #2170 from urbanrotnik/ur-sci-4008-rte-image-download 
Fix for downloading image [SCI-4008]
 2019-10-22 15:12:11 +02:00
Urban Rotnik
a7d351dc38 Add file size check 2019-10-22 14:13:22 +02:00
Urban Rotnik
0119533e75 Fix for file generation 2019-10-22 11:02:59 +02:00
Oleksii Kriuchykhin
53402c9ce1 Fix images in reports, impove speed of report generation [SCI-3990][SCI-3993] 2019-10-17 13:30:14 +02:00
Oleksii Kriuchykhin
a2d70afeca Improve missing files handling when clonning TinyMceAsset [SCI-3950] 2019-10-04 15:59:22 +02:00
Oleksii Kriuchykhin
bab228e1df Skip missing files when clonning TinyMceAsset [SCI-3950] 2019-10-03 15:43:39 +02:00
Oleksii Kriuchykhin
584f2d07c0 Fix file handling in protocol import/copying [SCI-3935][SCI-3926][SCI-3934] 2019-10-01 13:06:01 +02:00
Anton Ignatov
40a8c6a1cc Markup fix 2019-09-26 16:29:26 +02:00
Anton Ignatov
1f02fb4bc7 Fix tinymce assets render in report 2019-09-26 16:27:22 +02:00
Anton Ignatov
305e9dc109 Fix error handling and rubocop error 2019-09-25 13:45:34 +02:00
Anton Ignatov
646107a35b Fix error on task copy 2019-09-23 16:33:57 +02:00
Anton Ignatov
69eb8681bd Error handling, when image unavaliable for base64 2019-09-18 15:11:51 +02:00
aignatov-bio
a3b2c7d5fe
Fix report image issues [SCI-3772] (#1983) 
* Fix report image issues

* Small fixes
 2019-09-12 09:02:45 +02:00
Oleksii Kriuchykhin
973efa55e1 Merge branch 'master' into ok_SCI_3678 2019-08-08 11:17:07 +02:00
aignatov-bio
f0b7771e19
Merge pull request #1943 from aignatov-bio/ai-sci-3629-add-metadata-to-protocol-repository-import-export 
Fix protocol copy, add metadata to assets [SCI-3629]
 2019-08-05 12:55:16 +02:00
Anton Ignatov
24da016465 Reuse duplicate file method 2019-08-05 11:30:36 +02:00
Anton Ignatov
3b7f715e0b Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-22 13:09:17 +02:00
Anton Ignatov
b762ae6a90 Copy protocol assets through tempfile 2019-07-19 15:23:34 +02:00
aignatov-bio
2fae7d8208
Fix issue in report (#1941) 2019-07-19 10:37:44 +02:00
Anton Ignatov
b5a35f583a Fix protocol copy, add metadata to assets 2019-07-18 15:39:08 +02:00
Anton Ignatov
57a273d5d0 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 11:34:41 +02:00
Oleksii Kriuchykhin
a1941a21dc Futher refactoring of old Paperclip methods [SCI-3539] 2019-07-09 10:28:15 +02:00
Miha Mencin
ab9b7a7429
Merge pull request #1902 from biosistemika/release-1.16.6 
Merge 'release-1.16.6' into 'master'
 2019-07-08 12:49:40 +02:00
Oleksii Kriuchykhin
9d926dc956 Refactor TinyMce assets, user avatars, zip files [SCI-3539] 2019-07-05 16:56:05 +02:00
aignatov-bio
88dc2dcdd0
Hot fix for TinyMCE asset permission check (#1896) 
* Hot fix for TimyMCE asset permission check
 2019-07-04 15:59:11 +02:00
Oleksii Kriuchykhin
f2b617ac12 Fix code formatting [SCI-3436] 2019-06-19 14:23:12 +02:00
Oleksii Kriuchykhin
ae1a63037b Raise an exception if required methods for ViewableModel are not implemented [SCI-3436] 2019-06-19 14:17:17 +02:00
Oleksii Kriuchykhin
6e1a7a3392 Implement saving of attachments ordering on steps [SCI-3436] 2019-06-11 10:08:33 +02:00
aignatov-bio
0b3b6d593b
Small style fixes [SCI-3498] (#1799) 
* Adding error, if TinyMCE asset not in text, when we copy anything

* Small style fixes
 2019-05-27 16:27:27 +02:00
aignatov-bio
0f86ebf173
Adding error, if TinyMCE asset not in text, when we copy anything [SCI-3495] (#1797) 
* Adding error, if TinyMCE asset not in text, when we copy anything
 2019-05-22 16:13:40 +02:00
aignatov-bio
b22dba7f05
Add delay job for handling unknown tinyMCE images (#1781) 
* Add delay job for handling unknown tinyMCE images
 2019-05-20 12:44:16 +02:00
aignatov-bio
f1f04adeb2
Fix placeholder in protocol description [SCI-3454] (#1769) 
* Fix placeholder in protocol description

* Change task tags text
 2019-05-15 14:13:13 +02:00
aignatov-bio
1555daa0c6
Fix non associated tinyMCE images (#1762) 
* Fix non assosiated tinyMCE images
 2019-05-14 15:01:57 +02:00
aignatov-bio
d3aa6371cd
Fix report saving [SCI-3443] (#1753) 
* Fix report saving

* Fix the report saving by using the reports' structures

* Remove uneccesary yarn.lock (mistake)
 2019-05-13 10:55:08 +02:00
aignatov-bio
0b194eb3b1
Revert "Fix report saving (#1748)" (#1752) 
This reverts commit 3db6129808.
 2019-05-13 09:09:36 +02:00
aignatov-bio
3db6129808
Fix report saving (#1748) 2019-05-13 08:58:47 +02:00
Anton Ignatov
5a5101410c Fix markup 2019-05-08 14:35:28 +02:00
Anton Ignatov
b2063d3018 Fix markup 2019-05-08 14:30:33 +02:00
Anton Ignatov
f201c5440b Add check for old tinymce for report and reassign process 2019-05-08 14:29:25 +02:00
aignatov-bio
84993ea3ef
Update protocol repository for new description format [SCI-3371] (#1689) 
* Update protocol repository for new description format

* move image clone method to concerns
 2019-04-24 13:34:56 +02:00
Oleksii Kriuchykhin
7c91b4a255 Merge remote-tracking branch 'scinote/master-with-note-section' into ok_SCI_3266 2019-04-23 17:01:13 +02:00
Oleksii Kriuchykhin
c7a707f9db Fix task clonning with TinyMCE images [SCI-3266] 2019-04-23 15:16:40 +02:00
Anton Ignatov
aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
aignatov-bio
6b45dcd475
Update eln export for new tinyMCE image format (#1680) 2019-04-19 14:44:40 +02:00
aignatov-bio
e2e299b424
Add dynamic generating filters for global activities [SCI-3228] (#1644) 
* Add dynamic generating filters

* Add url methods
 2019-04-09 09:08:27 +02:00
Anton Ignatov
c9f9523210 Remove src when save description and rename token tag 2019-04-02 13:41:32 +02:00
Anton Ignatov
4ec0a3c871 Update TinyMCE image loader for new fields 2019-03-22 10:52:26 +01:00
Anton Ignatov
5d6f009ee8 fix error for delay deleting 2019-03-20 15:20:31 +01:00
Anton Ignatov
55c93922ea markup fixes 2019-03-20 14:46:54 +01:00
Anton Ignatov
07c2819163 refactoring tinymce image uploading 2019-03-20 14:46:54 +01:00
Urban Rotnik
3992336db9 Add type and value_for attributes to user hash 2019-03-11 08:37:22 +01:00
Urban Rotnik
b8e84b5685 Add logic for saving message items values and types 2019-03-11 08:37:22 +01:00
Oleksii Kriuchykhin
61147b480c Add main global activities bussiness logic [SCI-3014] 2019-02-26 11:01:15 +01:00
Matej Zrimšek
9480234682 Show all smart annotations when they contain special characters [SCI-2816] 2018-12-09 11:15:31 +01:00
Oleksii Kriuchykhin
2c0927b254 Search for IDs on inventory table as text [SCI-2802] 2018-11-30 15:32:01 +01:00
Oleksii Kriuchykhin
02f536cd08 Merge latest features/export-all [SCI-2733] 2018-10-16 17:20:19 +02:00
Jure Grabnar
6b47165ac1 Fix formatting according to Houndbot 2018-10-16 11:00:38 +02:00
Jure Grabnar
2558b7a313 Fix formatting according to HoundBot 2018-10-16 11:00:38 +02:00
Jure Grabnar
26df1e5a98 Add export project modal 
Closes [SCI-2645]
 2018-10-16 11:00:38 +02:00
Oleksii Kriuchykhin
1cafbd8c50 Move generic code to Viewable Concern [SCI-2733] 2018-10-12 16:14:24 +02:00
zmagod
e654725d9e fixes smart annotation serch queries/dropdown item picker [fixes SCI-2511] 2018-07-06 14:26:20 +02:00
zmagod
23f8f35a2c a shotgun surgery that fixes searching/filtering of repository_rows [fixes SCI-2339] 2018-04-26 11:05:02 +02:00
zmagod
6e255a4657 fixes failing specs 2018-04-04 14:44:32 +02:00
zmagod
e630d3113f add ID column to repository [fixes SCI-2206] 2018-04-04 11:55:11 +02:00
Matej Zrimšek
321ddc2916 Grouped existing project permissions and used 'canaid' gem. 2018-02-14 13:09:45 +01:00
Luka Murn
00fe267a2a Minor codestyle fixes 2017-11-23 11:33:39 +01:00
Luka Murn
d715eb06ef Add team & project role-related helper functions to User model 
This will be required later once we start using Canaid.
 2017-11-16 15:50:30 +01:00
Luka Murn
c62002381b Add default settings migration and concern 2017-08-10 11:30:57 +02:00
Oleksii Kriuchykhin
0ee7e11620 Add advanced search options [SCI-1158] 2017-05-05 16:41:23 +02:00
Oleksii Kriuchykhin
07d658ab82 Improve speed of search [SCI-1157] 2017-04-11 14:55:44 +02:00
zmagod
e5ba134e83 fixes search 2016-11-16 14:50:06 +01:00
zmagod
3728a6cef9 fixed sql regex 2016-11-14 12:32:41 +01:00
zmagod
630724df2b strips the html tags from fearch query 2016-11-11 11:41:23 +01:00
Luka Murn
076b67620f Migration GitLab -> GitHub 2016-07-21 13:11:15 +02:00
Luka Murn
055298fee8 Initial commit. 2016-02-12 16:52:43 +01:00