Commit graph

782 commits

Author SHA1 Message Date
Mojca Lorber
c476816359 Task activities refactoring, without tests 2019-03-19 15:33:57 +01:00
Urban Rotnik
fe35c805b7 Add model breadcrumbs, update activities_helper 2019-03-19 14:01:06 +01:00
aignatov-bio
6eae12efab
Updating permission check for image editing [SCI - 3153, 3159] (#1568)
*Add permission check for assets editing

* Add check for image format
2019-03-19 13:52:57 +01:00
Oleksii Kriuchykhin
0c71493fdb Add viewing permissions for global activities [SCI-2997] 2019-03-18 15:38:19 +01:00
Urban Rotnik
2ea2700837 fixup! Fix failing tests 2019-03-15 10:30:51 +01:00
Urban Rotnik
3f18166320 Add Task and TaskTags activities 2019-03-12 09:15:06 +01:00
Urban Rotnik
b33e95e18a New Protocols actions logging 2019-03-12 09:14:53 +01:00
Urban Rotnik
3992336db9 Add type and value_for attributes to user hash 2019-03-11 08:37:22 +01:00
Urban Rotnik
b8e84b5685 Add logic for saving message items values and types 2019-03-11 08:37:22 +01:00
Urban Rotnik
117944117b Add service for activity creation 2019-03-11 08:36:15 +01:00
Alex Kriuchykhin
ec1aec3bf1
Merge pull request #1556 from okriuchykhin/ok_SCI_3048
Fix local storage file download links [SCI-3048]
2019-03-07 16:58:30 +01:00
Oleksii Kriuchykhin
0c99ea9c5c Fix local storage file download links [SCI-3048] 2019-03-07 16:46:05 +01:00
Oleksii Kriuchykhin
8cc95bf491 Embed tables JS files to main HTML of Export All [SCI-3151] 2019-03-07 14:23:10 +01:00
Oleksii Kriuchykhin
2b239e2f35 Fix JS files inclusion in export all report [SCI-3150] 2019-03-07 11:14:38 +01:00
aignatov-bio
ec2dbb897f
Adding side pane filter and top pane tags [SCI - 3008, 3009, 3010, 3011, 3012, 3018, 3019, 3020] (#1521)
* Adding side pane filtering and top pane
2019-03-06 10:34:04 +01:00
Alex Kriuchykhin
985820a97c
Merge pull request #1527 from okriuchykhin/ok_SCI_3101
Move templates project creation for new team to delayed job [SCI-3101]
2019-03-01 13:55:49 +01:00
Miha Mencin
576520659c
Merge pull request #1532 from biosistemika/mm-sci-3031-remove-duplicated-relations
added uniquness validator and index on user_projects and user_teams r…
2019-02-27 19:53:25 +01:00
Miha Mencin
51b3aea49a added uniquness validator and index on user_projects and user_teams relations
finxing typo, fixied failing test

fixing mistakenly commited file

fixing schema to include bigint migration
2019-02-27 15:09:47 +01:00
Anton Ignatov
a6666c688c Adding check for user tutorial 2019-02-27 13:55:46 +01:00
Oleksii Kriuchykhin
74a60d443d Merge branch 'features/global-activities' into ok_SCI_3014_v2 2019-02-26 13:46:25 +01:00
Oleksii Kriuchykhin
a0d2f7c676 Move templates project creation for new team to delayed job [SCI-3101] 2019-02-26 13:32:00 +01:00
Oleksii Kriuchykhin
61147b480c Add main global activities bussiness logic [SCI-3014] 2019-02-26 11:01:15 +01:00
Urban Rotnik
5a123d26ac Activity model update 2019-02-26 07:15:05 +01:00
Urban Rotnik
3ad6cee766 Fix tests, remove nullable field 2019-02-25 16:50:38 +01:00
Urban Rotnik
5b5c6c7122 Changes to Activity model 2019-02-25 16:49:55 +01:00
Jure Grabnar
f9cb8c8803 Add utc conversion to due_date 2019-02-22 10:47:39 +01:00
Jure Grabnar
87dcf301fb Change due_date calculation to DateTime#end_of_day 2019-02-22 10:23:12 +01:00
Jure Grabnar
96f2da1e8b Shift due day calculations for 1 day
Closes SCI-3069.
2019-02-22 08:01:15 +01:00
Miha Mencin
bcd0b433b6
Merge pull request #1514 from biosistemika/features/system-notifications
Features/system notifications
2019-02-21 16:38:58 +01:00
aignatov-bio
5f78d83f9c
Changing status from unread to read system notification is not correct one [SCI-3077 and SCI-3075] (#1513)
* fix dropdown apperance

* Remove search and fix duplicate bug

* Fix specs for new method
2019-02-21 16:15:13 +01:00
aignatov-bio
5fdba554d2
Merge pull request #1510 from biosistemika/features/system-notifications
Features/system notifications
2019-02-20 17:22:57 +01:00
Urban Rotnik
82ea31e275 Add validation limits for system notification fields 2019-02-20 16:05:15 +01:00
Urban Rotnik
7b6c6c414d Merge branch 'master' into features/templates 2019-02-19 14:46:15 +01:00
aignatov-bio
fcdb4e7a92
Merge pull request #1500 from biosistemika/features/system-notifications
Features/system notifications
2019-02-19 13:51:18 +01:00
Urban Rotnik
f63eaaefe7 Add user_system_notification records when syncing notifications, update email sending 2019-02-19 11:22:58 +01:00
Urban Rotnik
29d77ca81d Add system_notification sending email feature 2019-02-19 11:20:25 +01:00
aignatov-bio
8e905b67b2
System notification navbar menu drop down [SCI 2955] (#1498)
* Add dropdown menu and icon for system notifications
* Finish system notification dropdown menu and add tests
2019-02-19 11:08:59 +01:00
aignatov-bio
c598541e09
System notification modal window [SCI-2957 and SCI-2958] (#1484)
* Added new system notification modal

* Adding loading system notification on sign in
2019-02-15 13:07:29 +01:00
Alex Kriuchykhin
185e3b4832
Merge pull request #1495 from okriuchykhin/ok_SCI_3039
Create templates project when syncing templates if team doesn't have it [SCI-3039]
2019-02-14 17:40:01 +01:00
Mojca Lorber
343a46584f Rename scope 2019-02-14 14:54:04 +01:00
Mojca Lorber
0e14c126e5 Add scope instead of method for active my_module_group 2019-02-14 10:53:48 +01:00
Urban Rotnik
9f3187abdf Add service for sync system notifications 2019-02-13 15:48:15 +01:00
Oleksii Kriuchykhin
da30d187a6 Create templates project when syncing templates if team doesn't have it [SCI-3039] 2019-02-13 15:17:33 +01:00
mlorb
71e4cc4dbd
Merge branch 'master' into ml-sci-2940 2019-02-13 14:35:03 +01:00
Mojca Lorber
0adb8b2b61 Fix failing tests 2019-02-13 14:31:26 +01:00
aignatov-bio
5c85595ab4
System Notifications - View All Page [SCI-2956 and SCI-3001] (#1482)
* System notification view and notification partial (SCI 2956 and SCI 3001)
2019-02-13 13:06:14 +01:00
Oleksii Kriuchykhin
fdff69f22e Add comment for Tika start up code [SCI-2967] 2019-02-07 11:06:25 +01:00
Oleksii Kriuchykhin
13c4bd25af Optionally disable Tika background mode through env variable [SCI-2967] 2019-02-04 16:47:29 +01:00
mz3944
a315808d58
Merge pull request #1473 from mz3944/mz-SCI-2918
In html project export there is formula instead of result in table [SCI-2918]
2019-02-01 04:49:14 +01:00
Urban Rotnik
8ebb7561d9 Add last_time_changed_at columnd to SystemNotifications 2019-01-31 16:44:20 +01:00
Matej Zrimšek
ac78c7d21b Process Handsontable formulas in project HTML files in team export [SCI-2918] 2019-01-31 07:39:17 +01:00
Urban Rotnik
6f7fcb0831 Refactor method clone_experiment_as_template into service object
[SCI-2925]
2019-01-31 07:13:40 +01:00
Oleksii Kriuchykhin
cc92de3726 Merge latest features/templates [SCI-2939] 2019-01-30 10:43:54 +01:00
Urban Rotnik
3e2c9934d0 Add SystemNotification model
- SystemNotifiction model with spec
- UserSystemNotification model for many-many association
2019-01-29 11:40:26 +01:00
Urban Rotnik
4cf12d12d1 Refactor 'move_experiment' method into service object
Jira Ticket: SCI-2926
2019-01-28 11:45:36 +01:00
Oleksii Kriuchykhin
05edfae766 Fix failing tests [SCI-2939] 2019-01-25 14:13:00 +01:00
Urban Rotnik
247bae8a9f Refactor export_all_counter increasing/reseting logic
- Remove daily task
- Add method to user Model
2019-01-25 11:16:31 +01:00
Oleksii Kriuchykhin
bd2efa55ac Add templates business logic [SCI-2939] 2019-01-25 10:55:08 +01:00
Mojca Lorber
fa1dff6352 refactor Demo project generation 2019-01-24 13:40:53 +01:00
mz3944
f6c8af105d
Merge pull request #1434 from mz3944/mz-SCI-2903
Fix (unite) Date and Time display formats [SCI-2903]
2019-01-21 09:50:34 +01:00
Urban Rotnik
f1d59e65f3 Add module and rename service object 2019-01-18 16:56:33 +01:00
Urban Rotnik
47cc6a9d10 Refactor workflow_image_generation and move to service class 2019-01-18 16:56:33 +01:00
Urban Rotnik
686f10cbd0 Refactor instance method 'ordered_modules' to scope 2019-01-18 16:56:33 +01:00
Urban Rotnik
1b70f42817 Refactor 'Experiment.modules_without_group' to Module's scope 2019-01-18 16:54:00 +01:00
Oleksii Kriuchykhin
e62e1873b0 Fix issue with caching in inventories dropdown [SCI-2776] 2019-01-17 15:04:20 +01:00
Oleksii Kriuchykhin
4f9eb7e165 Fix binary files in Export All archive [SCI2950] 2019-01-16 17:07:05 +01:00
Oleksii Kriuchykhin
534866467b Add counters to task inventories dropdown [SCI-2776] 2019-01-03 14:11:00 +01:00
Matej Zrimšek
b74105abc2 Fix Date and Time display formats 2018-12-23 20:30:09 +01:00
Luka Murn
1c8407e4f4
Merge pull request #1433 from okriuchykhin/ok_SCI_2864
Additional fix for export all S3 path [SCI-2864]
2018-12-20 13:27:50 +01:00
Oleksii Kriuchykhin
2fa4f42883 Additional fix for export all S3 path [SCI-2864] 2018-12-20 13:22:56 +01:00
Luka Murn
faf6601962
Merge pull request #1432 from okriuchykhin/ok_SCI_2864
Fix S3 zip exports path [SCI-2864]
2018-12-20 11:08:48 +01:00
Oleksii Kriuchykhin
c880f3fd84 Fix S3 zip exports path [SCI-2864] 2018-12-20 11:07:19 +01:00
Luka Murn
8935e4c7c1
Merge pull request #1426 from Ducz0r/lm-add-queue-to-export-all-jobs
Add team_zip_export job queue to export all delayed jobs
2018-12-16 22:16:10 +01:00
Alex Kriuchykhin
abdf64a8c7
Merge pull request #1420 from okriuchykhin/ok_SCI_2894
Replace reports materialized view with normal queries and re-enable fragment caching [SCI-2894]
2018-12-16 19:44:50 +01:00
Luka Murn
7ba9628cfb Add team_zip_export job queue to export all delayed jobs 2018-12-13 18:40:56 +01:00
Oleksii Kriuchykhin
311189a2e9 Replace reports materialized view with normal queries and re-enable fragment caching [SCI-2894] 2018-12-13 11:18:09 +01:00
Luka Murn
3d7b633c25 Hound is love, Hound is life 2018-12-12 14:03:16 +01:00
Luka Murn
24af108e98 Change PDF in export all to HTML 2018-12-12 11:15:16 +01:00
Alex Kriuchykhin
51ba74cbab
Merge pull request #1403 from okriuchykhin/ok_SCI_2757
Enable caching for navigation sidebar [SCI-2757]
2018-12-10 14:11:05 +01:00
Matej Zrimšek
9480234682 Show all smart annotations when they contain special characters [SCI-2816] 2018-12-09 11:15:31 +01:00
Alex Kriuchykhin
9621f0b372
Merge pull request #1408 from okriuchykhin/ok_SCI_2802
Search for IDs on inventory table as text [SCI-2802]
2018-12-03 11:39:57 +01:00
Oleksii Kriuchykhin
2c0927b254 Search for IDs on inventory table as text [SCI-2802] 2018-11-30 15:32:01 +01:00
Oleksii Kriuchykhin
bf3c7e7840 Fix search across reports, search all readable projects [SCI-2823] 2018-11-30 11:46:13 +01:00
Oleksii Kriuchykhin
e43b366cdb Disable fragment caching 2018-11-29 18:07:31 +01:00
Oleksii Kriuchykhin
60a19734b2 Enable caching for navigation sidebar [SCI-2757] 2018-11-29 11:28:36 +01:00
Alex Kriuchykhin
c3ef391641
Merge pull request #1380 from okriuchykhin/ok_SCI_2869
Prevent user being added to project/task multiple times [SCI-2869]
2018-11-20 22:38:38 +01:00
mz3944
6b996fc000
Merge pull request #1362 from mz3944/mz-SCI-2817
Export - various small changes/fixes [SCI-2817]
2018-11-20 21:32:47 +01:00
Oleksii Kriuchykhin
5deaf25fd9 Prevent user being added to project/task multiple times [SCI-2869] 2018-11-20 14:29:33 +01:00
Alex Kriuchykhin
a6bc02a2cb
Merge pull request #1369 from okriuchykhin/ok_SCI_2830
Refactor result and step comments [SCI-2830]
2018-11-20 00:13:15 +01:00
Alex Kriuchykhin
d524a1d508
Merge pull request #1364 from okriuchykhin/ok_SCI_2778
Add time format selection to settings [SCI-2778]
2018-11-19 10:17:09 +01:00
Matej Zrimšek
dea4ed4e15 Add model name to the archive folders in export-all ZIP structure [SCI-2817] 2018-11-19 04:46:33 +01:00
Luka Murn
e9c0b34662 Merge branch 'core-api' into 'master'
Conflicts:
	Gemfile
	app/services/api.rb
	config/initializers/api.rb
	config/initializers/extends.rb
	config/routes.rb
	db/schema.rb
	spec/controllers/api/api_controller_spec.rb
2018-11-14 16:59:04 +01:00
Oleksii Kriuchykhin
537de596a7 Merge latest master [SCI-2778] 2018-11-14 13:05:57 +01:00
Oleksii Kriuchykhin
380a96dcce Add caching for step and result fragments [SCI-2830] 2018-11-14 11:57:53 +01:00
mz3944
056efe170b
Merge pull request #1358 from mz3944/mz-SCI-2646
Removal of the temporary files for export all [SCI-2646]
2018-11-13 20:31:04 +01:00
Luka Murn
84df2c81f9 Merge branch 'features/export-all'
Conflicts:
	app/controllers/experiments_controller.rb
	app/controllers/my_modules_controller.rb
	db/schema.rb
2018-11-13 09:14:02 +01:00
Oleksii Kriuchykhin
8d0dbc7076 Add time format selection to settings [SCI-2778] 2018-11-09 16:19:40 +01:00
Matej Zrimšek
2a5b36b3c2 Fix index/position for export-all folder names [SCI-2817] 2018-11-09 01:21:30 +01:00
Matej Zrimšek
6ff117d662 Fix path creation and construction for export-all [SCI-2817] 2018-11-09 00:44:17 +01:00
Matej Zrimšek
f23160ba6d Refactor logic for handling model path in export-all [SCI-2817] 2018-11-08 23:23:23 +01:00