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1619 commits

Author SHA1 Message Date
Oleksii Kriuchykhin 6afebdc5da Remove inventory links of unshared inventory [SCI-4715] 2020-06-01 17:50:31 +02:00
Urban Rotnik 446a2db186 Export and import checklist items with delimiter 2020-06-01 17:19:33 +02:00
Alex Kriuchykhin b688b0c335
Merge pull request #2616 from okriuchykhin/ok_SCI_4698_v2 
Fix handling of deleted repositories in reports [SCI-4698]
 2020-05-29 16:51:17 +02:00
Alex Kriuchykhin 26449fdfe2
Merge pull request #2625 from okriuchykhin/ok_SCI_4712 
Fix assigned repositories list and snapshot creation for shared repositories [SCI-4712]
 2020-05-29 09:52:08 +02:00
Oleksii Kriuchykhin 8027cc6a49 Fix assigned repositories list and snapshot creation for shared repositories [SCI-4712] 2020-05-28 16:15:05 +02:00
aignatov-bio aaff5eb67f Add name order for porject/experiment/task sidebar 2020-05-27 13:31:00 +02:00
Oleksii Kriuchykhin b430d507cf Fix handling of deleted repositories in reports [SCI-4698] 2020-05-27 12:15:19 +02:00
Alex Kriuchykhin 8ed8f148a3 Revert "Fix handling of deleted repositories in reports [SCI-4698]" 2020-05-27 10:39:44 +02:00
Oleksii Kriuchykhin 6424bd23da Fix handling of deleted repositories in reports [SCI-4698] 2020-05-27 08:21:55 +02:00
Urban Rotnik b264b86cba Prepand callback 2020-05-25 14:00:41 +02:00
Urban Rotnik d9690115f8 Move refresh reference from controller to model 2020-05-25 13:19:34 +02:00
Urban Rotnik df8fe20d03 Keep reportElements up to date with active snapshots and repositories 2020-05-25 13:19:33 +02:00
Urban Rotnik 359517eb17 Add deleted repositories to report 2020-05-25 13:19:30 +02:00
Urban Rotnik 2b493ce6f6 Refactor assigned rows 2020-05-25 13:19:29 +02:00
Urban Rotnik 9536939b3b Show snapshot rows in report 2020-05-25 13:19:28 +02:00
Oleksii Kriuchykhin c98b042585 Improve handling of unassigned inventories with existing snapshots [SCI-4661] 2020-05-22 17:36:04 +02:00
Oleksii Kriuchykhin 388f52a064 Make a snapshot name synced with the inventory name if changed [SCI-4656] 2020-05-21 11:51:37 +02:00
Miha Mencin 7de12990a9 SCI-4628 moving snapshot provisioning logic into repository model, making snapshot unique selection validation conditional 2020-05-21 00:36:24 +02:00
Urban Rotnik a2ade6e0ec Merge branch 'develop' into features/new-task-layout 2020-05-15 14:27:56 +02:00
Urban Rotnik ba68eef044 Fix for empty status cell 2020-05-14 17:59:25 +02:00
Miha Mencin 15508a5065 codestyle fix 2020-05-14 12:57:16 +02:00
Miha Mencin 76232f0298 SCI-4601 fix the associations, minor styling changes 2020-05-14 11:47:19 +02:00
Oleksii Kriuchykhin 9c70fa1990 Fix code style [SCI-4596] 2020-05-13 18:00:58 +02:00
Oleksii Kriuchykhin ba1661b40f Fix handling of deleted repositories for snapshots [SCI-4596] 2020-05-13 18:00:56 +02:00
Oleksii Kriuchykhin c74fa3c244 Make snapshots selectable [SCI-4596] 2020-05-13 17:58:05 +02:00
Alex Kriuchykhin 76d1196724
Merge pull request #2544 from okriuchykhin/ok_SCI_4597 
Refactor Repository permissions and implement deduplication for files in snapshots [SCI-4597]
 2020-05-13 16:42:47 +02:00
aignatov-bio 8e20dccc66
Merge pull request #2510 from aignatov-bio/ai-sci-4509-add-recent-protocols-tab 
Add recent protocol tab to load protocal from repository [SCI-4509]
 2020-05-08 13:17:26 +02:00
aignatov-bio c9545ddb19 Merge branch 'features/new-task-layout' into ai-sci-4509-add-recent-protocols-tab 2020-05-08 10:28:33 +02:00
aignatov-bio 8ec7a4b7b4 Merge branch 'features/new-task-layout' into ai-sci-4559-add-assigned-tasks-dropdown-to-inventory 2020-05-07 13:03:00 +02:00
aignatov-bio 8076d8f464 Create helper for partial 2020-05-07 12:51:18 +02:00
Oleksii Kriuchykhin 25f9c5bc7d Refactor Repository permissions and implement deduplication for files in snapshots [SCI-4597] 2020-05-06 15:17:54 +02:00
Urban Rotnik 1fe1b782f1 Fix for user filter in task activity page 2020-04-30 09:20:29 +02:00
Alex Kriuchykhin 0e865f8e45
Merge pull request #2525 from okriuchykhin/ok_SCI_4552 
Implement background processing of repository snapshots [SCI-4552]
 2020-04-29 12:03:23 +02:00
Urban Rotnik 5c72200801 Remove tooltips settings for user 2020-04-28 12:44:47 +02:00
aignatov-bio b9c5089c2b Add search to assigned tasks dropdown 2020-04-28 12:41:59 +02:00
Oleksii Kriuchykhin e6ad5047e0 Implement background processing of repository snapshots [SCI-4552] 2020-04-28 12:09:36 +02:00
aignatov-bio 0604815c00 Add assigned task dropdown to repository 2020-04-24 15:43:10 +02:00
aignatov-bio 10fdd0c1c7 Merge branch 'develop' into features/new-task-layout 2020-04-23 14:07:40 +02:00
Oleksii Kriuchykhin 943285d4a0 Fix Azure AD user creation on sign in [SCI-4544] 2020-04-22 16:47:06 +02:00
Oleksii Kriuchykhin f811d11c59 Add versions sidebar to assigned repository rows full view modal [SCI-4525] 2020-04-21 14:49:36 +02:00
Oleksii Kriuchykhin b85c192b68 Remove duplicate method from repository [SCI-4516] 2020-04-15 14:48:26 +02:00
Oleksii Kriuchykhin 1ca3c875a6 Add option for storing Azure app configs in settings using JSON format [SCI-4544] 2020-04-14 15:56:41 +02:00
aignatov-bio fe718349da Add recent protocol tab to load protocal from repository 2020-04-09 17:29:39 +02:00
Oleksii Kriuchykhin 837437309e Fix failing tests [SCI-4516] 2020-04-09 17:11:58 +02:00
Oleksii Kriuchykhin 3a67c99982 Switch to STI for repositories, fix cell values snapshotting [SCI-4516] 2020-04-09 12:33:04 +02:00
Oleksii Kriuchykhin a9c3102835 Add repository snapshots with service, refactor item assigning [SCI-4516] 2020-04-07 18:26:39 +02:00
aignatov-bio 9a64ebdfd0 Update sql and add accordion effect 2020-04-03 13:15:56 +02:00
aignatov-bio dd3f2cb219 Update my_module assigned repository method 2020-04-03 12:33:42 +02:00
aignatov-bio 9678372dd5 Add assigned repositories list 2020-04-02 12:05:07 +02:00
aignatov-bio 4c33abff05 Assign user after task created 2020-03-30 15:16:14 +02:00
aignatov-bio 6bdd45e7b7 Fix timezone when import datetime 2020-03-24 17:45:09 +01:00
Miha Mencin fd8462b008 codstyle 2020-03-18 10:35:31 +01:00
Miha Mencin ecd49cb1e7 fix format and export_format mess 2020-03-18 09:57:57 +01:00
Miha Mencin 24b979aa6f fix CR comments 2020-03-18 09:53:47 +01:00
Miha Mencin c89503f691 SCI-4464 fix the import of the dates, some tests 2020-03-17 21:20:50 +01:00
Oleksii Kriuchykhin 675b578272 Add used space calculation method to the team model [SCI-4459] 2020-03-17 16:56:55 +01:00
Oleksii Kriuchykhin a518bfe023 Enable time fraction for task due date [SCI-4408] 2020-03-16 17:55:35 +01:00
aignatov-bio d924faaafd
Merge pull request #2455 from aignatov-bio/ai-sci-4403-recent-work-layout 
Add recent work widget [SCI-4400][SCI-4401][SCI-4402][SCI-4403]
 2020-03-12 11:26:23 +01:00
aignatov-bio a32a3db8e5 Split joins scope 2020-03-11 14:30:41 +01:00
aignatov-bio bfaf5a1786 Fix markup 2020-03-11 11:39:17 +01:00
aignatov-bio c13721f842 Fix recent work service and move templates to html 2020-03-11 11:34:59 +01:00
Miha Mencin 26b687f2e6
Merge pull request #2460 from biosistemika/features/dashboard 
Features/dashboard
 2020-03-10 18:06:23 +01:00
Alex Kriuchykhin 4bea0781da
Merge pull request #2418 from okriuchykhin/ok_SCI_4276 
Add API endpoints for new column types [SCI-4276]
 2020-03-09 12:58:54 +01:00
Miha Mencin 62b934f012 Merge branch 'develop' into features/dashboard 2020-03-09 09:56:32 +01:00
Alex Kriuchykhin de0d389b96
Merge pull request #2454 from okriuchykhin/ok_SCI_4434 
Refactor inventory limit checks [SCI-4434]
 2020-03-06 15:33:01 +01:00
Oleksii Kriuchykhin 02817a5a1e Refactor inventory limit checks [SCI-4434] 2020-03-05 15:26:25 +01:00
aignatov-bio 4af992ef35 Fix date import for repository 2020-03-05 14:34:31 +01:00
aignatov-bio eb4a783337 Fix task visibility for current task widget 2020-03-03 13:13:46 +01:00
Oleksii Kriuchykhin 78ceb41a9e Improve loading of tasks statistics for dashboard [SCI-4356] 2020-02-28 16:17:32 +01:00
Miha Mencin 1fd876bb40
Merge pull request #2425 from mlorb/ml-sci-4348 
Dashboard current tasks visual layout and backend [SCI-4348] [SCI-4355]
 2020-02-28 12:11:31 +01:00
Mojca Lorber 3c09923d96 Refactoring current tasks backend 2020-02-28 11:51:08 +01:00
Mojca Lorber 415721112a Optimize completed_steps_percentage 2020-02-27 17:12:31 +01:00
Mojca Lorber 9bd2e8bec4 Dashboard current tasks visual layout and backend 2020-02-21 10:41:42 +01:00
aignatov-bio cf4dbd5ff4 Add calendar widget 2020-02-20 17:02:38 +01:00
Oleksii Kriuchykhin 9d0d75acc5 Add API endpoints for new column types [SCI-4276] 2020-02-18 15:13:46 +01:00
Oleksii Kriuchykhin 0fec8f4d95 Improve speed of inventory import [SCI-4336] 2020-02-11 13:51:34 +01:00
Alex Kriuchykhin 9c763f2111 Merge pull request #2383 from okriuchykhin/ok_SCI_4220 
Extend inventory import to support new data types [SCI-4220]
 2020-02-10 11:04:34 +01:00
Oleksii Kriuchykhin f97577ec12 Remove byebug entry [SCI-4220] 2020-02-10 10:40:38 +01:00
Oleksii Kriuchykhin 7d107bf45b Fix tests [SCI-4317] 2020-02-05 11:58:27 +01:00
Oleksii Kriuchykhin 8c5637a19c Add explicit ordering of items for repository columns [SCI-4317] 2020-02-05 11:11:06 +01:00
Oleksii Kriuchykhin 632b54cb98 Merge branch 'develop' into ok_SCI_4220 2020-02-03 15:50:06 +01:00
Oleksii Kriuchykhin d9cf2b57fd Fix failing tests [SCI-4220] 2020-02-03 15:48:49 +01:00
Oleksii Kriuchykhin b0c785f4fb Extend inventory import to support new data types [SCI-4220] 2020-02-03 15:20:01 +01:00
Urban Rotnik 3db48c44f7 Add ordered scope 2020-01-30 13:47:14 +01:00
Urban Rotnik 2007524365
Merge pull request #2352 from urbanrotnik/ur-sci-4272-multiple-checklist-items-fix 
Fix for items with newline [SCI-4272]
 2020-01-30 13:05:41 +01:00
Urban Rotnik 13c9dd8cf6 Safe navigation for serializer value of RepositoryListItem 2020-01-28 13:38:37 +01:00
Urban Rotnik 503c05805d Move editable? method from helper to model 2020-01-25 09:43:05 +01:00
Urban Rotnik 8d7f51edde Fix for items with newline 2020-01-22 13:15:29 +01:00
Alex Kriuchykhin e3e36d40a7
Merge pull request #2322 from okriuchykhin/ok_SCI_4251 
Fix global search for repositories and checklists update [SCI-4251]
 2020-01-16 16:37:12 +01:00
Urban Rotnik 7655dd0bea
Merge pull request #2321 from urbanrotnik/ur-sci-4257 
Remove Checklist item min length validation and modal fixes [SCI-4257]
 2020-01-16 16:02:30 +01:00
Oleksii Kriuchykhin 8c2b1e5037 Fix global search for repositories and checklists update [SCI-4251] 2020-01-16 15:30:19 +01:00
Urban Rotnik 469714c40d Remove Checklist item min length validation and modal fixes 2020-01-16 15:21:01 +01:00
Urban Rotnik 507443ba38 Add custom method for repository report JSON data 2020-01-16 14:42:26 +01:00
Oleksii Kriuchykhin bb32117796 Improve user experience for repository saving and fix checklist saving [SCI-4237] 2020-01-15 15:23:03 +01:00
Alex Kriuchykhin da26d8a018
Merge pull request #2304 from okriuchykhin/ok_SCI_4204 
Refactor repository cell cloning to support all data types [SCI-4204]
 2020-01-15 13:04:50 +01:00
Alex Kriuchykhin 9412cccc9c
Merge pull request #2306 from urbanrotnik/ur-sci-fix-for-list-items-update 
Fix for list items update
 2020-01-15 12:34:33 +01:00
Urban Rotnik 97954b3930 fixup! Fix list item update 2020-01-15 11:28:31 +01:00
Oleksii Kriuchykhin 9e8bd23616 Merge latest branch 'develop' into ok_SCI_3988 2020-01-15 10:52:20 +01:00
Oleksii Kriuchykhin eed68a2590 Refactor repository cell clonning to support all data types [SCI-4204] 2020-01-14 16:55:10 +01:00
Oleksii Kriuchykhin 7b82e33eb6 Fix repository filtering and improve speed [SCI-4224] 2020-01-13 16:09:07 +01:00
aignatov-bio ac2f431a0b
Merge pull request #2292 from aignatov-bio/ai-sci-4221-fix-big-numbers-in-repository-number-value 
Fix big number in repository number value [SCI-4221]
 2020-01-13 10:42:13 +01:00
Alex Kriuchykhin 67b1bf4611
Merge pull request #2286 from urbanrotnik/ur-sci-4161-v2 
Fix for numeric item in SQL array [SCI-4161]
 2020-01-13 10:15:48 +01:00
Alex Kriuchykhin 007cae39e8
Merge pull request #2291 from okriuchykhin/ok_SCI_4197 
Fix sorting for date time columns [SCI-4197]
 2020-01-10 15:25:53 +01:00
aignatov-bio 9ede0ef716 Fix big number in repository number value 2020-01-10 13:00:14 +01:00
Oleksii Kriuchykhin 4799e6a1eb Fix failing tests [ok_SCI_4197] 2020-01-10 11:09:47 +01:00
Urban Rotnik 9296f0eb4f Add extra format for exports 2020-01-10 11:09:30 +01:00
Urban Rotnik 824e116cfa Add presence validation for STI type on DateTime column types 2020-01-10 11:09:30 +01:00
Urban Rotnik 728823ed65 fixup! Fix for numeric item in SQL array 2020-01-10 09:46:25 +01:00
Oleksii Kriuchykhin ad5a5f3ebf Fix sorting for date time columns [SCI-4197] 2020-01-09 16:18:28 +01:00
Urban Rotnik 39593b6342 Fix for numeric item in SQL array 2020-01-09 11:24:38 +01:00
Oleksii Kriuchykhin 2ec27e54f3 Fix repository status item deletion issue [SCI-4212] 2020-01-08 17:32:07 +01:00
Oleksii Kriuchykhin 522ae12f08 Merge branch 'develop' into ok_SCI_3988 2020-01-07 17:07:22 +01:00
Oleksii Kriuchykhin d9b9243da7 Merge branch 'develop' into features/new-column-types 2020-01-07 16:03:33 +01:00
Alex Kriuchykhin 1de5e0a47b
Merge pull request #2264 from aignatov-bio/ai-sci-4157-add-new-columns-support-for-report 
Add helper for repository tables in docx report [SCI-4157]
 2020-01-07 15:33:12 +01:00
Oleksii Kriuchykhin 1b902ff4b3 Merge branch 'develop' into ok_SCI_3988 2020-01-07 15:26:30 +01:00
aignatov-bio c3c070c11a Update checklist formatted value 2020-01-06 13:03:05 +01:00
aignatov-bio 83f8df2012 Rebase branch and fix checklist formatted 2020-01-06 12:40:09 +01:00
aignatov-bio 4895f41238 Add helper for repository tables in docx report 2020-01-06 12:40:09 +01:00
Urban Rotnik c15bcf0769 Add search support for numeric 2020-01-06 10:12:11 +01:00
Urban Rotnik 87288d0771 Add search for statuses 2020-01-06 10:12:08 +01:00
aignatov-bio 3bd44dc5ab
Merge pull request #2271 from aignatov-bio/ai-sci-4168-refactor-checklist-model 
Refactor checklist column data structure [SCI-4168]
 2019-12-24 11:12:36 +01:00
aignatov-bio 54800cb69b Merge branch 'features/new-column-types' into ai-sci-4168-refactor-checklist-model 2019-12-20 15:46:39 +01:00
aignatov-bio 16c4879e56 Merge migrations and update sorting 2019-12-20 15:42:54 +01:00
Urban Rotnik dfe3c5292e Add TimeRange and DateRange renderer 2019-12-20 14:57:04 +01:00
Urban Rotnik 5d4453470a Add DateTimeRange renderer 2019-12-20 14:56:11 +01:00
Urban Rotnik 2a63854123 Edit and new renderers for DateTime columns 2019-12-20 14:55:11 +01:00
Alex Kriuchykhin 0566b17d50
Merge pull request #2272 from okriuchykhin/ok_SCI_4166 
Add view/edit renderers for numeric data type [SCI-4166]
 2019-12-19 11:57:13 +01:00
aignatov-bio dc91893d7e Refactor checklist column data structure 2019-12-18 14:10:41 +01:00
Oleksii Kriuchykhin e24bc2775a Add view/edit renderers for numeric data type [SCI-4166] 2019-12-18 11:55:12 +01:00
Urban Rotnik 7153711570 Move delimiter from column to metadata 2019-12-18 10:22:52 +01:00
Alex Kriuchykhin 792e6f2eb9
Merge pull request #2263 from okriuchykhin/ok_SCI_4142 
Implement SSO with Azure AD [SCI-4142]
 2019-12-12 16:12:40 +01:00
aignatov-bio 7664f4be78 Add checklist and list edit mode 2019-12-11 14:49:14 +01:00
Oleksii Kriuchykhin 1aa334fdaa Merge branch 'develop' into release-1-17-8 2019-12-11 10:55:00 +01:00
Oleksii Kriuchykhin ff4ef818fb Implement SSO with Azure AD [SCI-4142] 2019-12-10 17:24:53 +01:00
Urban Rotnik d35f7119b7 Moved delete action to service 2019-12-10 14:29:37 +01:00
Urban Rotnik 5345cf0342 Updated date and time comparison 2019-12-10 14:29:36 +01:00
Urban Rotnik 5055490a23 Refactor asset value methods 2019-12-10 14:29:36 +01:00
Urban Rotnik 82b93bf9a4 Fix failing tests 2019-12-10 14:29:35 +01:00
Urban Rotnik b68aadf506 Update params nesting 2019-12-10 14:29:35 +01:00
Urban Rotnik 0c990ef8cf Add functions for creating new cells with values 2019-12-10 14:29:34 +01:00
Urban Rotnik 5b710241e1 Add delete condition to update_data method on CellValues 2019-12-10 14:29:33 +01:00
Urban Rotnik 79a50860b6 Add methods update_data, data_changed, formatted for all types off ColumnValues 2019-12-10 14:29:29 +01:00
Mojca Lorber a3a5b21951 small fixes 2019-12-10 12:02:08 +01:00
mlorb 1122fe2d2f
Merge branch 'features/new-column-types' into ml-sci-4029 2019-12-10 10:54:41 +01:00
Alex Kriuchykhin 2e15548680
Merge pull request #2245 from okriuchykhin/ok_SCI_4107 
Fix TinyMCE images and avatars for export all [SCI-4107]
 2019-12-10 10:35:09 +01:00
Urban Rotnik e764e856d8 Fix syntax error 2019-12-10 09:40:40 +01:00
Mojca Lorber 8503dd7007 Add numeric repository column type 2019-12-09 16:38:21 +01:00
Alex Kriuchykhin 7a97f813b2
Merge pull request #2252 from biosistemika/SCI-4109-export-with-assigned-item-bugfix 
SCI-4109 fix the file copying
 2019-12-09 16:04:43 +01:00
aignatov-bio 09079fbcda Fix naming and tests 2019-12-09 13:48:36 +01:00
aignatov-bio 643abc3fd7 Fixes tests 2019-12-09 13:48:36 +01:00
aignatov-bio d8676596f1 Add checklists column type 2019-12-09 13:48:36 +01:00
Urban Rotnik eca0c84bbd Fix tests 2019-12-06 14:20:37 +01:00
Urban Rotnik e934e08c17 Implement STI for DateTimeValue types 2019-12-06 12:50:19 +01:00
Oleksii Kriuchykhin 7a89cae56f Fix TinyMCE images and avatars for export all [SCI-4107] 2019-12-05 13:27:17 +01:00
Oleksii Kriuchykhin 03667f619f Merge branch 'release-1-17-7' into develop 2019-12-05 13:03:39 +01:00
aignatov-bio 43ff9f6f26 Fix experiment copy 2019-12-02 15:34:42 +01:00
Alex Kriuchykhin fbf1a5b6e2
Merge pull request #2239 from okriuchykhin/ok_SCI_4098 
Refactor Azure configuration  and connected accounts [SCI-4098]
 2019-11-29 11:30:33 +01:00
Urban Rotnik 5f2407e3fb Add view renders for DateTime column types 2019-11-29 10:50:14 +01:00
Urban Rotnik cb0fe049f0 Remove range method from model 2019-11-29 10:19:55 +01:00
Urban Rotnik 5ae29d549e Add manage modal for DateTime values 2019-11-29 10:19:55 +01:00
Urban Rotnik f39af1916f Split DateTime and DateTimeRange column types, rename DateType table 2019-11-29 10:19:16 +01:00
Urban Rotnik f30664a7b3 Add inverse_of option 2019-11-29 10:19:15 +01:00
Urban Rotnik aee806edaa Add methods for repository_date_time_value 2019-11-29 10:19:14 +01:00
Urban Rotnik 2a20ad68a3 Add range column to RepositoryColumn 2019-11-29 10:19:14 +01:00
Urban Rotnik b591346a3f Add DateTime type column 2019-11-29 10:19:13 +01:00
Urban Rotnik 1e8261ac2a Update InventoryColumns API for new Status Type 2019-11-29 10:19:07 +01:00
Oleksii Kriuchykhin 73be1181ac Fix failing tests for repository states [SCI-4070] 2019-11-29 10:19:05 +01:00
Oleksii Kriuchykhin e8fdfe7111 Implement datatables renderer for status data type [SCI-4032] 2019-11-29 10:19:04 +01:00
Urban Rotnik 1720623665 Refactor RepositoryListColumn controller 2019-11-29 10:17:50 +01:00
Urban Rotnik 14b43d516e Add UpdateStatusColumnService service 2019-11-29 10:16:45 +01:00
Urban Rotnik bbb8c46fe2 Add CreateStatusColumnService service 2019-11-29 10:16:44 +01:00
Urban Rotnik c00a837105 Add models for RepositoryStatus column type 2019-11-29 10:16:43 +01:00
Oleksii Kriuchykhin 6b20a10473 Refactor Azure configuration [SCI-4098] 2019-11-26 15:09:40 +01:00
Miha Mencin b968de96c7
Merge pull request #2232 from biosistemika/SCI-4109-export-with-assigned-item-bugfix 
SCI-4109 fix the file copying
 2019-11-25 17:32:34 +01:00
Miha Mencin 48fc7708f8 SCI-4109 fix the file copying 2019-11-25 13:38:16 +01:00
Urban Rotnik 0dc1daa7c6 Add gem Down, File size validation before and during download 2019-11-18 14:28:19 +01:00
Oleksii Kriuchykhin b2862b6c9e Remove Paperclip DB columns and fix experiment templates [SCI-3988] 2019-11-18 14:16:28 +01:00
Anton Ignatov 7117b767f4 Fix commnets to PR 2019-11-18 13:59:54 +01:00
Anton Ignatov fc70ce24f8 Refactor side filters for global activities 2019-11-18 13:59:54 +01:00
Anton Ignatov 7b855f54ac Finish main part of selectors 2019-11-18 13:59:54 +01:00
aignatov-bio b1f9e7f1ca Fix global activities jsonb field [SCI-3830] (#2030) 
* Fix global activities jsonb field

* Fix tests
 2019-11-18 13:59:54 +01:00
Urban Rotnik dcfca76602 Update method 'update_canvas' to work with new DB constraint 2019-11-18 11:11:41 +01:00
Urban Rotnik b8bf7bbd9b Rename validation 2019-11-18 11:11:40 +01:00
Urban Rotnik 43e3763ec8 Update x, y, experiment unqiue validation 
[SCI-3887]
 2019-11-18 11:11:40 +01:00
Urban Rotnik 060125a1c4 Add file size validation 2019-11-18 11:11:38 +01:00
Urban Rotnik 24033bec7a Add API endpoint for Task creation 2019-11-18 11:11:37 +01:00
Urban Rotnik 7802d5ee8b Add uniq validation for x and y position scoped to experiment 2019-11-18 11:11:36 +01:00
aignatov-bio 3eb6f5695b
Merge pull request #2207 from aignatov-bio/mlorb-ml-sci-4004 
Add auto-save feature to text fields [SCI-4004]
 2019-11-18 09:11:10 +01:00
aignatov-bio b979435b35
Merge pull request #2199 from aignatov-bio/ai-sci-4055-fix-eln-export-for-files-without-extension 
Fix eln export for file without extension [SCI-4055]
 2019-11-15 14:16:07 +01:00
aignatov-bio a9690482d1 Add autosave feature to text fields 2019-11-12 11:26:18 +01:00
aignatov-bio 0c5ce90895 Fix eln export for file without extension 2019-11-06 09:53:44 +01:00
Oleksii Kriuchykhin b2eda231a0 Fix TinyMCE images in protocol clonning [SCI-4053] 2019-11-05 18:13:44 +01:00
aignatov-bio 717b70f75b
Merge pull request #2171 from aignatov-bio/ai-sci-3995-fix-avatar-comments-and-activties 
Fix avatars in comments and activities [SCI-3995]
 2019-10-29 14:11:39 +01:00
Urban Rotnik 169a381629
Merge pull request #2170 from urbanrotnik/ur-sci-4008-rte-image-download 
Fix for downloading image [SCI-4008]
 2019-10-22 15:12:11 +02:00
Urban Rotnik a7d351dc38 Add file size check 2019-10-22 14:13:22 +02:00
Alex Kriuchykhin 5524598d53
Merge pull request #2172 from biosistemika/release_1_17_3 
Merge release 1.17.3 to master
 2019-10-22 12:45:02 +02:00
aignatov-bio 9950a23188 Replace base64 avatars with url 2019-10-22 12:27:13 +02:00
Urban Rotnik 0119533e75 Fix for file generation 2019-10-22 11:02:59 +02:00
Oleksii Kriuchykhin 53402c9ce1 Fix images in reports, impove speed of report generation [SCI-3990][SCI-3993] 2019-10-17 13:30:14 +02:00
Oleksii Kriuchykhin 8f52b362d6 Fix file handling in protocol import/copying [SCI-3935][SCI-3926][SCI-3934] 2019-10-11 11:46:51 +02:00
Miha Mencin 8e98c82bbf SCI-3979 removing accessors 2019-10-09 15:49:49 +02:00
Miha Mencin 6d71036d07
Remove paperclip attribute accessors 2019-10-09 10:20:00 +02:00
Miha Mencin 78fd5df0f6
Revert "Fix report in academia" 2019-10-09 10:16:39 +02:00
Miha Mencin 37e6604f8b
Merge pull request #2136 from biosistemika/SCI-3975-team-export 
Sci 3975 team export
 2019-10-08 21:47:08 +02:00
Miha Mencin f12c29bd2a fixing import 2019-10-08 21:40:44 +02:00
aignatov-bio 5eed152403
Revert "Force save office file" 2019-10-08 21:34:16 +02:00
aignatov-bio 0d88466894
Merge pull request #2139 from aignatov-bio/ai-sci-fix-office-save 
Force save office file
 2019-10-08 21:11:33 +02:00
aignatov-bio 236ce30254 Force save office file 2019-10-08 21:10:18 +02:00
aignatov-bio 4a5db36c07
Merge pull request #2138 from aignatov-bio/ai-sci-fix-report-in-academia 
Fix report in academia
 2019-10-08 20:19:48 +02:00
aignatov-bio 5d80c51996 Fix report in academia 2019-10-08 20:18:51 +02:00
Oleksii Kriuchykhin 3d9c2282f3 Implement JPEG quality extraction for ActiveStorage [SCI-3959] 2019-10-08 10:42:55 +02:00
Alex Kriuchykhin 39a2669eef
Merge pull request #2129 from okriuchykhin/ok_SCI_3950 
Improve missing files handling when clonning TinyMceAsset [SCI-3950]
 2019-10-07 09:18:45 +02:00
Oleksii Kriuchykhin a2d70afeca Improve missing files handling when clonning TinyMceAsset [SCI-3950] 2019-10-04 15:59:22 +02:00
Alex Kriuchykhin 076d61d4d0
Merge pull request #2116 from okriuchykhin/ok_SCI_3908 
Remove Paperclip from the codebase [SCI-3908]
 2019-10-04 14:45:42 +02:00
Oleksii Kriuchykhin bab228e1df Skip missing files when clonning TinyMceAsset [SCI-3950] 2019-10-03 15:43:39 +02:00
Oleksii Kriuchykhin 260fcd6e89 Remove Paperclip from codebase [SCI-3908] 2019-10-02 19:45:14 +02:00
Oleksii Kriuchykhin efe5d8a6ea Remove the deprecated foreign keys from TinyMceAsset [SCI-3839] 2019-10-01 15:49:37 +02:00
Oleksii Kriuchykhin 46bcc0e78e Fix cloning of TinyMCE images in protocol description [SCI-3935][SCI-3926][SCI-3934] 2019-10-01 13:38:09 +02:00
Oleksii Kriuchykhin 584f2d07c0 Fix file handling in protocol import/copying [SCI-3935][SCI-3926][SCI-3934] 2019-10-01 13:06:01 +02:00
Anton Ignatov 33497d11a3 Merge branch 'activestorage_migration' 2019-10-01 10:36:05 +02:00
Jure Grabnar 0a3389f310 Fix operator for removing the lock on asset 2019-09-30 08:46:16 +02:00
Alex Kriuchykhin 53caaf647b
Merge pull request #2080 from okriuchykhin/ok_SCI_3891 
Move file preview generation to delayed job [SCI-3891]
 2019-09-27 10:50:21 +02:00
Miha Mencin 0e75ea2e3e
Merge pull request #2096 from aignatov-bio/ai-sci-3932-fix-tiny-mce-render-in-report 
Fix tinymce assets render in report [SCI-3932]
 2019-09-27 10:48:10 +02:00
Anton Ignatov 40a8c6a1cc Markup fix 2019-09-26 16:29:26 +02:00
Anton Ignatov 1f02fb4bc7 Fix tinymce assets render in report 2019-09-26 16:27:22 +02:00
Jure Grabnar 668f902570 Fix export all with active storage 
Close SCI-3924
 2019-09-26 16:01:30 +02:00
Anton Ignatov 305e9dc109 Fix error handling and rubocop error 2019-09-25 13:45:34 +02:00
Jure Grabnar 5cb900370a Change/fix asset locking mechanism 
Close SCI-3870
 2019-09-25 11:07:53 +02:00
Oleksii Kriuchykhin aabeeec95a Move file preview generation to delayed job [SCI-3891] 2019-09-23 21:07:03 +02:00
Anton Ignatov 646107a35b Fix error on task copy 2019-09-23 16:33:57 +02:00
Alex Kriuchykhin 29ffe05442
Merge pull request #1964 from okriuchykhin/ok_SCI_3643 
Add text extraction from MarvinJS for search [SCI-3643]
 2019-09-18 16:22:11 +02:00
Anton Ignatov 69eb8681bd Error handling, when image unavaliable for base64 2019-09-18 15:11:51 +02:00
Oleksii Kriuchykhin 3509543e7b Merge branch 'master' into ok_SCI_3881 2019-09-16 11:56:49 +02:00
Oleksii Kriuchykhin c068901b00 Upgrade Rails to 6.0 [SCI-3745] 2019-09-12 17:24:08 +02:00
aignatov-bio a3b2c7d5fe
Fix report image issues [SCI-3772] (#1983) 
* Fix report image issues

* Small fixes
 2019-09-12 09:02:45 +02:00
Alex Kriuchykhin 59a85d8181
Merge pull request #2004 from okriuchykhin/ok_SCI_3778 
Fix new office file creation [SCI-3778]
 2019-09-04 15:40:34 +02:00
Oleksii Kriuchykhin 267c53c2d2 Refactor inventory sharing logic [SCI-3803] 2019-08-29 17:21:49 +02:00
Miha Mencin 9e9e698778 SCI-3806 Add an icon indicating shared status to dropdown 2019-08-26 09:14:37 +02:00
aignatov-bio 0810699770
Update shared inventory permissions [SCI-3802] (#2009) 
* Update shared inventory permissions

* Fix tests and simplify condition for placeholder
 2019-08-23 10:57:02 +02:00
Oleksii Kriuchykhin 3918c893db Fix new office file creation [SCI-3778] 2019-08-21 13:26:11 +02:00
aignatov-bio f94b8165dc
Fix marvinjs edit button and icon (#1985) 2019-08-21 11:15:57 +02:00
Mojca Lorber 530d09df64 add i-shared inventory icon 2019-08-19 15:43:55 +02:00
aignatov-bio d741e52427
Fix global search for inventories (#1988) 2019-08-19 09:23:59 +02:00
Urban Rotnik 89f289660b Add share_with_all feature to service, add new activities 2019-08-14 11:03:15 +02:00
Urban Rotnik 0ce331227c Update permission and model to share repository over all teams 2019-08-13 14:07:24 +02:00
aignatov-bio 737f9e572c
Replace marvinJS logo and fix some merge issues [SCI-3731] (#1976) 
* Replace marvinJS logo and fix some merge issues

* Fix tests
 2019-08-13 11:04:19 +02:00
Urban Rotnik dc4751e49a Update scope 'accessible_by_teams' and fix load_vars method in controllers 2019-08-12 10:55:30 +02:00
Oleksii Kriuchykhin 32054c5516 Handle situation for assets without blob in list sorting [SCI-3757] 2019-08-09 15:17:19 +02:00
Oleksii Kriuchykhin c352a73d79 ActiveStorage fixies after latest master merge [SCI-3757] 2019-08-09 14:56:00 +02:00
Urban Rotnik 786716974b Add validation for team on TeamRepository 2019-08-09 14:15:50 +02:00
Urban Rotnik 32783576c1 Add controller action 'multiple_update' 
Add controller action, add update permission activity, add JS for handling ajax req
 2019-08-09 14:15:50 +02:00
Mojca Lorber 0e5afa6048 Small refactor 2019-08-09 14:13:02 +02:00
Mojca Lorber 7d4941015f Update global search, so it will be able to search through shared inventories 2019-08-09 14:13:01 +02:00
Mojca Lorber 7e9be932f3 Make scope for repositories accessible by teams and simplify read permission 2019-08-09 14:13:00 +02:00
Mojca Lorber cac7dab440 Show shared inventories in left navigation and fix read repository permission 2019-08-09 14:13:00 +02:00
Urban Rotnik 1a77702fa7 Add uniq index for Repository and Team in TeamRepositories 2019-08-09 14:13:00 +02:00
Urban Rotnik 077369d960 Update permissions for Repositories 2019-08-09 14:12:59 +02:00
Urban Rotnik f569411bc7 Add TeamRepository model 2019-08-09 14:12:59 +02:00
aignatov-bio 6e5f078dea
Add activities for marvinJS [SCI-3630] (#1950) 
* Add marvinJs activities to step and results

* Add activities for TinyMCE marvinJS assets

* Fix markup
 2019-08-09 09:47:07 +02:00
Oleksii Kriuchykhin 973efa55e1 Merge branch 'master' into ok_SCI_3678 2019-08-08 11:17:07 +02:00
Jure Grabnar bbdc5ce6c3 Remove couple of Samples related logic/comments 2019-08-05 14:09:13 +02:00
Anton Ignatov e2e876b2a3 Merge branch 'activestorage_migration' into ai-sci-3728-fix-active-storage-tests 2019-08-05 13:51:04 +02:00
aignatov-bio f0b7771e19
Merge pull request #1943 from aignatov-bio/ai-sci-3629-add-metadata-to-protocol-repository-import-export 
Fix protocol copy, add metadata to assets [SCI-3629]
 2019-08-05 12:55:16 +02:00
Anton Ignatov feadd940f7 Fix duplicate for TinyMCE model 2019-08-05 11:33:49 +02:00
Anton Ignatov 24da016465 Reuse duplicate file method 2019-08-05 11:30:36 +02:00
Oleksii Kriuchykhin a2fe4bee94 Add text extraction from MarvinJS for search [SCI-3643] 2019-08-02 15:17:28 +02:00
Anton Ignatov 7e379d4e0d Fix download file 2019-07-29 10:24:31 +02:00
Anton Ignatov f35f4886a3 Fix markup 2019-07-29 10:18:34 +02:00
Anton Ignatov a4b2825258 Fix tests for active storage 2019-07-26 15:58:51 +02:00
Anton Ignatov 618f0cc334 Fix tests for services 2019-07-26 14:16:44 +02:00
Anton Ignatov 84fe10df47 Fix tests for models and tema import/export 2019-07-26 12:40:36 +02:00
Luka Murn 83bb89fdf5 Cherry-picked commit from ZZ (and LM)'s various changes 2019-07-26 10:13:14 +02:00
Anton Ignatov 3b7f715e0b Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-22 13:09:17 +02:00
Anton Ignatov b762ae6a90 Copy protocol assets through tempfile 2019-07-19 15:23:34 +02:00
aignatov-bio 4fe0227d8c
Add metadata for .eln assets (#1942) 2019-07-19 10:53:33 +02:00
aignatov-bio 2fae7d8208
Fix issue in report (#1941) 2019-07-19 10:37:44 +02:00
Anton Ignatov b5a35f583a Fix protocol copy, add metadata to assets 2019-07-18 15:39:08 +02:00
Anton Ignatov 1e8663548e Add MarvinJS assets to TinyMCE 2019-07-16 13:40:54 +02:00
Anton Ignatov 3339c1fbbf Add MarvinJS to Result and TinyMce MarvinJS refactor 2019-07-15 17:17:14 +02:00
Anton Ignatov ba1d6d45ca Fix merging issues 2019-07-12 15:47:15 +02:00
Anton Ignatov ffd415d409 Inital refactor for Assets model 2019-07-12 15:02:06 +02:00
Anton Ignatov 7831b0a089 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 15:00:07 +02:00
Anton Ignatov 57a273d5d0 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 11:34:41 +02:00
Oleksii Kriuchykhin 64b7a5646a Implement custom document file previewer [SCI-3677] 2019-07-10 14:37:23 +02:00
Oleksii Kriuchykhin a1941a21dc Futher refactoring of old Paperclip methods [SCI-3539] 2019-07-09 10:28:15 +02:00
Miha Mencin ab9b7a7429
Merge pull request #1902 from biosistemika/release-1.16.6 
Merge 'release-1.16.6' into 'master'
 2019-07-08 12:49:40 +02:00
Alex Kriuchykhin 82708f0124
Merge pull request #1891 from okriuchykhin/ok_SCI_3654 
Fix project page view saving [SCI-3654]
 2019-07-08 11:46:54 +02:00
Oleksii Kriuchykhin 9d926dc956 Refactor TinyMce assets, user avatars, zip files [SCI-3539] 2019-07-05 16:56:05 +02:00
aignatov-bio 88dc2dcdd0
Hot fix for TinyMCE asset permission check (#1896) 
* Hot fix for TimyMCE asset permission check
 2019-07-04 15:59:11 +02:00
Oleksii Kriuchykhin c0c8e0e1a3 Refactor Experiment workflow images [SCI-3539] 2019-07-04 09:33:12 +02:00
Jure Grabnar 20134c9f8a
Features/protocolsio integration (#1893) 
Features/protocolsio integration
 2019-07-03 17:32:20 +02:00
aignatov-bio d147e8260d
Fix issue with moving protocol in repository (#1887) 2019-07-03 15:35:37 +02:00
Oleksii Kriuchykhin e16cb513e1 Fix project page view saving [SCI-3654] 2019-07-03 15:34:16 +02:00
Oleksii Kriuchykhin 4ea6b56582 Fix Step and Result file previews [SCI-3539] 2019-07-01 23:30:20 +02:00
Anton Ignatov 1f40fa69fc Merge branch 'features/marvinjs-integration' of https://github.com/biosistemika/scinote-web into features/marvinjs-integration 2019-07-01 11:51:27 +02:00
aignatov-bio a08d93376c
Add promo modal when MarvinJS disabled (#1872) 2019-07-01 11:51:13 +02:00
Anton Ignatov c9ae9f056e Merge branch 'okriuchykhin-ok_SCI_3539' into features/marvinjs-integration 2019-07-01 10:44:29 +02:00
aignatov-bio 2793777463
Features/docx report (#1873) 
* Initial setup for docx report

* Add render for project, experiment, my_module

* Implement converter for RTE fields

* Add all report elements

* fix markup

* Change headers, remove empty blocks, refactored repository draw

* Add smart annotations support

* Fix justify fields

* Prepare for addons integration

* Fix markup

* Add comments to GemFile

* Fix TinyMCE error

* Change UI for new report download selector

* Fix file error in inventory cell for docx

* Fix i18n object for header
 2019-07-01 10:14:16 +02:00
Anton Ignatov 390002f40f Merge branch 'ok_SCI_3539' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_3539 2019-07-01 10:12:26 +02:00
Oleksii Kriuchykhin 5acb16d43e Update Asset helper methods [SCI-3539] 2019-06-28 08:17:09 +02:00
Oleksii Kriuchykhin ba2daede0b Add migration scripts [SCI-3539] 2019-06-24 15:17:42 +02:00
Anton Ignatov 7e5c39d3e4 Merge branch 'master' into features/marvinjs-integration 2019-06-21 14:51:45 +02:00
Alex Kriuchykhin db7c6435b3
Merge pull request #1851 from okriuchykhin/ok_SCI_3436 
Implement saving of attachments ordering on steps [SCI-3436]
 2019-06-20 11:31:15 +02:00
Oleksii Kriuchykhin f2b617ac12 Fix code formatting [SCI-3436] 2019-06-19 14:23:12 +02:00
Oleksii Kriuchykhin ae1a63037b Raise an exception if required methods for ViewableModel are not implemented [SCI-3436] 2019-06-19 14:17:17 +02:00
aignatov-bio 9653f16196
Convert image to base64 in PDF reports [SCI-3557] (#1835) 
* Convert image to base64 in PDF reports

* Fix typo error
 2019-06-19 13:57:04 +02:00
Urban Rotnik 807104035c Add StepBuilder, TableBuilder, AssetBuilder for PIO, normalized updated 2019-06-17 12:24:09 +02:00
aignatov-bio 68937dd192
Fix RTE import for protocol repository (#1833) 2019-06-14 16:20:27 +02:00
aignatov-bio 7a3eedf461
Adding missing avatars to comments (#1838) 2019-06-14 16:20:13 +02:00
aignatov-bio 52a2f5cd0e
Add recent protocols dropdown to task page [SCI-3417] (#1800) 
* Add recent protocols dropdown to task page
 2019-06-13 15:47:29 +02:00
Oleksii Kriuchykhin 097639e71e Fix view state validation [SCI-3436] 2019-06-13 14:28:46 +02:00
Alex Kriuchykhin 599274eb13
Merge pull request #1830 from okriuchykhin/ok_SCI_3528 
Make repositories more extendable [SCI-3528]
 2019-06-13 09:45:18 +02:00
Oleksii Kriuchykhin 6e1a7a3392 Implement saving of attachments ordering on steps [SCI-3436] 2019-06-11 10:08:33 +02:00
Jure Grabnar bbfe2b9c89
Merge pull request #1798 from biosistemika/jg_sci_3145_thumbnail_preview 
File preview on new attachments layout [SCI-3145]
 2019-06-10 17:59:12 +02:00
Jure Grabnar 56949db9da Move extract_image_quality to before_post_process 2019-06-10 17:48:00 +02:00
Jure Grabnar c2d615ab48 Remove image quality preprocessor 2019-06-10 15:10:07 +02:00
Urban Rotnik bbe0062bfd Small fixes for factories 2019-06-10 12:24:05 +02:00
Urban Rotnik 965b7eb58b Add missing factories 2019-06-10 12:24:04 +02:00
Urban Rotnik f19eeba8dc Add factory valid check for User's associations 2019-06-10 12:24:04 +02:00
Urban Rotnik ba340f7bee Add valid factory check for Table, Tag, Team 2019-06-10 12:24:03 +02:00
Urban Rotnik 9348886fb1 Minior changes in SystemNotifications tests 2019-06-10 12:24:03 +02:00
Urban Rotnik 15cbd8864c Add valid factory check to Steps models 2019-06-10 12:24:03 +02:00
Urban Rotnik 1e60102a7d Add valid factory check for Sample(s) models 2019-06-10 12:24:02 +02:00
Urban Rotnik c66aa29227 Add valid factory check for Result(s) models 2019-06-10 12:24:02 +02:00
Urban Rotnik 3adf2bb736 Add factories and validation tests for repositories and related models 
Repositories, cells, columns, values (date, text, asset, list), rows, items
 2019-06-10 12:24:02 +02:00
Urban Rotnik a7558d83be Add valid factory check for Project, MyModules, notification, protocol 2019-06-10 12:24:01 +02:00
Urban Rotnik 3348b81b14 Checklist, checklist_item, activity, experiment spec and factories updated 2019-06-10 12:24:01 +02:00
Urban Rotnik 6321c0f5c0 Assets spec and factories updated 2019-06-10 12:24:01 +02:00
Oleksii Kriuchykhin 8920d38a02 Make repositories more extendable [SCI-3528] 2019-06-06 17:28:59 +02:00
Oleksii Kriuchykhin e543a849d4 Add document file preview generation with LibreOffice [SCI-3145] 2019-06-05 14:52:30 +02:00
Anton Ignatov c9a29b12ba Merge branch 'master' into features/marvinjs-integration 2019-05-31 10:27:14 +02:00
aignatov-bio 0b3b6d593b
Small style fixes [SCI-3498] (#1799) 
* Adding error, if TinyMCE asset not in text, when we copy anything

* Small style fixes
 2019-05-27 16:27:27 +02:00
Luka Murn d7fe23c6ce
Merge pull request #1796 from Ducz0r/lm-sci-3494 
Fix the user.activities association so it works [SCI-3494]
 2019-05-24 14:21:42 +02:00
Luka Murn 3a2bf2ce8a
Merge pull request #1780 from Ducz0r/lm-perform-wopi-checks-on-startup 
Add a startup check for WOPI_ENABLED == true variables
 2019-05-22 16:56:55 +02:00
aignatov-bio 0f86ebf173
Adding error, if TinyMCE asset not in text, when we copy anything [SCI-3495] (#1797) 
* Adding error, if TinyMCE asset not in text, when we copy anything
 2019-05-22 16:13:40 +02:00
Luka Murn 8b116d9de7 Fix the user.activities association so it works 
Closes SCI-3494.
 2019-05-22 15:42:50 +02:00
Oleksii Kriuchykhin d3f29d5d72 Add type column to zip_exports for STI [SCI-3368] 2019-05-20 16:35:24 +02:00
aignatov-bio b22dba7f05
Add delay job for handling unknown tinyMCE images (#1781) 
* Add delay job for handling unknown tinyMCE images
 2019-05-20 12:44:16 +02:00
Luka Murn 4136aa0575 Add a startup check for WOPI_ENABLED == true variables 2019-05-18 10:22:53 +02:00
Luka Murn 8aa702a4bf Fix bug with external TinyMCE assets 2019-05-16 13:33:04 +02:00
Anton Ignatov 259b75a6ba Merge branch 'master' into features/marvinjs-integration 2019-05-16 09:28:48 +02:00
aignatov-bio 980d86824f
Fix updating process for old tinyMCE tags (#1772) 
* Fix update old tinyMCE for deleted objects

* Add error handling
 2019-05-15 16:11:48 +02:00
aignatov-bio f1f04adeb2
Fix placeholder in protocol description [SCI-3454] (#1769) 
* Fix placeholder in protocol description

* Change task tags text
 2019-05-15 14:13:13 +02:00
Miha Mencin 13d126bc39
Merge pull request #1761 from mlorb/ml-sci-3456 
Fix broken global activities team filter [SCI-3456]
 2019-05-14 16:36:44 +02:00
aignatov-bio 1555daa0c6
Fix non associated tinyMCE images (#1762) 
* Fix non assosiated tinyMCE images
 2019-05-14 15:01:57 +02:00
Mojca Lorber 54f735551c Fix broken global activities team filter 2019-05-14 13:50:10 +02:00
Oleksii Kriuchykhin 65fb4b1372 Fix processing_image_url for S3 storage [SCI-3381] 2019-05-14 12:53:35 +02:00
Luka Murn bd9ffe4bd2 Refactor WOPI filename length validation onto the model 2019-05-13 15:41:39 +02:00
Anton Ignatov 652fba0e23 Merge branch 'master-with-note-section' 2019-05-13 11:08:11 +02:00
aignatov-bio d3aa6371cd
Fix report saving [SCI-3443] (#1753) 
* Fix report saving

* Fix the report saving by using the reports' structures

* Remove uneccesary yarn.lock (mistake)
 2019-05-13 10:55:08 +02:00
aignatov-bio da5b24ef57
Fix attachment appearence after update (#1745) 2019-05-13 10:54:16 +02:00
aignatov-bio 0b194eb3b1
Revert "Fix report saving (#1748)" (#1752) 
This reverts commit 3db6129808.
 2019-05-13 09:09:36 +02:00
aignatov-bio 3db6129808
Fix report saving (#1748) 2019-05-13 08:58:47 +02:00
Anton Ignatov e5b4adcc25 Merge branch 'master-with-note-section' into features/marvinjs-integration 2019-05-11 20:51:01 +02:00
aignatov-bio bbf54de9c7
Merge pull request #1736 from aignatov-bio/ai-sci-3423-add-old-tinymce-support 
Add old tinymce image support [SCI-3423]
 2019-05-10 15:27:42 +02:00
Alex Kriuchykhin 2a7f70929a
Merge pull request #1717 from okriuchykhin/ok_SCI_3368 
Improve clean up of Export All files [SCI-3368]
 2019-05-09 13:37:56 +02:00
Oleksii Kriuchykhin 40550f92c9 Improve HTML data escaping in JSON endpoints [SCI-3403] 2019-05-08 17:38:24 +02:00
Anton Ignatov 995408e7fc Fix protocol update error, rollback bootstrap gems and fix step name 2019-05-08 17:18:19 +02:00
Anton Ignatov bee87f51ba Fix tests 2019-05-08 15:22:06 +02:00
Anton Ignatov b5271bdd2c Add remote api support 2019-05-08 15:00:36 +02:00
Anton Ignatov 5a5101410c Fix markup 2019-05-08 14:35:28 +02:00
Anton Ignatov b2063d3018 Fix markup 2019-05-08 14:30:33 +02:00
Anton Ignatov f201c5440b Add check for old tinymce for report and reassign process 2019-05-08 14:29:25 +02:00
Anton Ignatov 5d959f648e Convert old tinymce assets to new on fly 2019-05-08 14:23:26 +02:00
Anton Ignatov dcf94e78e1 Merge branch 'master-with-note-section' into feature/marvinjs-integration 2019-05-08 14:03:41 +02:00
Urban Rotnik 62bc0520e9 Update method last_sync_timestamp from Last to First user 2019-05-08 08:38:11 +02:00
Urban Rotnik 2364c2653f Add bulk insert for UserSystemNotifications, New service for sending emails 2019-05-08 08:38:10 +02:00
Urban Rotnik 357c6e6b98 Change ordering by created_at instead by last_time_changed_at 2019-05-08 08:37:34 +02:00
Oleksii Kriuchykhin 8461949bed Fix deletion of inconfirmed users [SCI-3351] 2019-05-07 16:02:45 +02:00
Anton Ignatov 7f296b35fa Update team exporter for new tinymce images 2019-05-07 13:22:55 +02:00
Jure Grabnar c866d96ea7
Merge pull request #1720 from jbargu/jg_sci_3375 
One project is duplicated in project list [SCI-3375]
 2019-05-06 11:43:24 +02:00
Anton Ignatov 565a4959b4 small fixes and improvments 2019-05-03 15:24:28 +02:00
Anton Ignatov 88e67a16c2 Merge branch 'master-with-note-section' into feature/marvinjs-integration 2019-05-02 16:16:03 +02:00
Anton Ignatov fef691d30f Add error handling and secutiry checks 2019-05-02 16:12:25 +02:00
Anton Ignatov 4d0d5aa014 Adding team sketches selector 2019-04-30 17:32:55 +02:00
Jure Grabnar de6509cc97 Add distinct to #visible_to in project.rb 
Closes SCI-3375
 2019-04-30 16:40:12 +02:00
Anton Ignatov 7c55fcf0cf Merge branch 'master' into master-with-note-section 2019-04-30 12:07:59 +02:00
Oleksii Kriuchykhin 1b792e2b7e Improve clean up of Export All files [SCI-3368] 2019-04-30 00:43:34 +02:00
Mojca Lorber 5fd4c47388 Move change owner functionality to RepositoryRow 2019-04-29 14:02:02 +02:00
Anton Ignatov f80d881847 Fix markup 2019-04-28 19:11:41 +02:00
Anton Ignatov 2847ec7609 Add env variable and check for MarvinJS available 2019-04-28 17:08:18 +02:00
Anton Ignatov 260810fff8 Add editing mode for tinymce images 2019-04-28 16:16:31 +02:00
Anton Ignatov 193edfbc35 Add marvin js support to TinyMCE 2019-04-27 22:54:59 +02:00
Anton Ignatov fe620c4a63 Add marvin model and controller 2019-04-26 22:59:38 +02:00
Mojca Lorber eac90109f7 Change ownership of inventory items, when a user leaves a team 2019-04-26 10:47:08 +02:00
Alex Kriuchykhin 6bb19ed0be
Merge pull request #1697 from okriuchykhin/ok_SCI_3264 
Update limits for new rich text enabled fileds [SCI-3264]
 2019-04-25 23:54:05 +02:00
Oleksii Kriuchykhin a3f5974dbd Update limits for new rich text enabled fileds [SCI-3264] 2019-04-24 13:37:22 +02:00
aignatov-bio 84993ea3ef
Update protocol repository for new description format [SCI-3371] (#1689) 
* Update protocol repository for new description format

* move image clone method to concerns
 2019-04-24 13:34:56 +02:00
Oleksii Kriuchykhin 7c91b4a255 Merge remote-tracking branch 'scinote/master-with-note-section' into ok_SCI_3266 2019-04-23 17:01:13 +02:00
Oleksii Kriuchykhin c7a707f9db Fix task clonning with TinyMCE images [SCI-3266] 2019-04-23 15:16:40 +02:00
Urban Rotnik 11a7a975af Merge branch 'features/scinote-improvements' into master-with-note-section 2019-04-23 14:50:03 +02:00
Anton Ignatov aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
Jure Grabnar 1da1558849
Merge pull request #1683 from jbargu/jg_3179 
Archived results are now separated in exported project
 2019-04-19 18:26:22 +02:00
aignatov-bio 6b45dcd475
Update eln export for new tinyMCE image format (#1680) 2019-04-19 14:44:40 +02:00
Jure Grabnar 1295c0583a Archived results are now separated in exported project 
Closes SCI-3179
 2019-04-17 16:37:21 +02:00
Oleksii Kriuchykhin f9832013b0 Improve experiment preview image generation [SCI-3177] 2019-04-17 12:06:46 +02:00
Urban Rotnik 0ba0dccd57
Merge pull request #1675 from urbanrotnik/ur-sci-3345-export-all-counter-fix 
Fix for exports_left, fix for some edge cases [SCI-3345]
 2019-04-16 10:32:31 +02:00
Urban Rotnik 22af36dd2d Fix for exports_left, fix for some edge cases 2019-04-16 09:59:02 +02:00
aignatov-bio 8d7cc57da1
Add zoom to image annotation and check jpeg file quality before save [SCI-3300] (#1654) 
* Add zoom to image annotation and check jpeg file quality before save
* Move compression to front end
* Move quality extractor to paperclip processor
 2019-04-15 09:49:44 +02:00
aignatov-bio 8ba0555922
Add check for tasks complete in project notifications (#1657) 2019-04-12 09:17:34 +02:00
Urban Rotnik caccf8d9f0 Reset counter for export in last 24 hours 
Fix for check if user has avaiable exports, bit refactored increas_counter method.
 2019-04-10 10:56:33 +02:00
aignatov-bio e2e299b424
Add dynamic generating filters for global activities [SCI-3228] (#1644) 
* Add dynamic generating filters

* Add url methods
 2019-04-09 09:08:27 +02:00
Jure Grabnar bc9eff2ef5 Add asset validation on wopi creation 
Missing file
 2019-04-04 17:05:25 +02:00
Miha Mencin 97d9fde3fd SCI-3286 add breadcrumbs to the report activity 2019-04-04 10:30:31 +02:00
Jure Grabnar 26848ecaef Refactor step position + 1 into a method 2019-04-03 13:07:30 +02:00
Alex Kriuchykhin bfd275c313
Merge pull request #1632 from okriuchykhin/ok_SCI_3281 
Fix permission checks for file editing and make protocol preview files read only [SCI-3281]
 2019-04-03 11:39:59 +02:00
aignatov-bio e034a0c055
Fix bug with update protocol from repository and modal disable button [SCI-3284] (#1631) 
* Fix bug with update protocol from repository and modal disable button
 2019-04-03 09:18:18 +02:00
Oleksii Kriuchykhin ffa7c5ecb2 Fix permition checks for file editing and make protocol preview files read only [SCI-3281] 2019-04-02 16:38:53 +02:00
Anton Ignatov c9f9523210 Remove src when save description and rename token tag 2019-04-02 13:41:32 +02:00
aignatov-bio e6102c72c7
Adding missed activities [SCI-3253] (#1614) 
* Adding missed activties

* Adding test for activities
 2019-04-02 11:50:37 +02:00
aignatov-bio e93b0c3109
Adding preload filters for global activities [SCI-3254] (#1619) 
* Adding preload filter for global activities

* Adding link to task activities
 2019-04-02 11:14:36 +02:00
Urban Rotnik b91f08fe99 Add activity for copying Inventory and Invetory item 2019-04-01 15:40:00 +02:00
Alex Kriuchykhin b3aa6be23d
Merge pull request #1621 from okriuchykhin/ok_SCI_3255 
Add global activities to reports [SCI-3255]
 2019-04-01 15:07:06 +02:00
Jure Grabnar 83130426e2
Merge pull request #1617 from jbargu/jg_3244 
Duplicated activity, report activity ... [SCI-3244]
 2019-04-01 14:31:53 +02:00
Jure Grabnar 111b0e2b7f
Merge pull request #1615 from jbargu/jg_sci_3252 
Change breadcrumbs for copy as template experiment, missing activity for move workflow [SCI-3252]
 2019-04-01 12:30:48 +02:00
Oleksii Kriuchykhin 98e58ff7eb Add global activities to reports [SCI-3255] 2019-04-01 11:26:51 +02:00
Jure Grabnar 6533368763 Add activity for importing inv items 2019-03-29 15:41:34 +01:00
Jure Grabnar f843092aac Add activity for moving worklfows 
Closes SCI-3252
 2019-03-29 13:51:17 +01:00
Oleksii Kriuchykhin 7d4fbcb32e Fix unconfirmed users clean-up issues [SCI-3172] 2019-03-29 11:11:53 +01:00
Alex Kriuchykhin 9137740266
Merge pull request #1607 from okriuchykhin/ok_SCI_3229 
Fix links for archived objects in global activities [SCI-3229][SCI-3241]
 2019-03-28 17:32:24 +01:00
Oleksii Kriuchykhin d7d45bec70 Fix links for archived objects in global activities [SCI-3229] 2019-03-28 13:43:50 +01:00
mlorb 5f663b3c74
Merge pull request #1600 from mlorb/ml-sci-3215 
Implement missing tests for global activities [SCI-3215][SCI-3219]
 2019-03-28 11:10:38 +01:00
Oleksii Kriuchykhin 37c559debd Fix experiment workflow image display after touching [SCI-3177] 2019-03-27 17:02:59 +01:00
Mojca Lorber f06358b2ae Implement missing tests for global activities (task and protocol activities) 2019-03-27 11:24:44 +01:00
aignatov-bio c2e1e85913
Adding localization for activity name and activity group (#1598) 2019-03-27 10:33:33 +01:00
Oleksii Kriuchykhin dab75d5aec Fix duplicated projects in new report modal [SCI-3173] 2019-03-26 17:24:30 +01:00
Alex Kriuchykhin 935e3a65cf
Merge pull request #1586 from okriuchykhin/ok_SCI_3199 
Fix multiple bugs in global activities [SCI-3197][SCI-3199][SCI-3213][SCI-3225]
 2019-03-26 16:02:44 +01:00
aignatov-bio 54fd3a748b
Adding activity groups [SCI-3203] (#1588) 
* Adding activty groups
 2019-03-26 15:29:21 +01:00
Oleksii Kriuchykhin e3a3ec4491 Fix multiple bugs in global activities [SCI-3197][SCI-3199][SCI-3213][3225] 2019-03-25 17:38:13 +01:00
Miha Mencin 4a87216a3d
Merge branch 'master' into features/global-activities 2019-03-25 14:35:24 +01:00
Anton Ignatov 4ec0a3c871 Update TinyMCE image loader for new fields 2019-03-22 10:52:26 +01:00
Anton Ignatov 5d6f009ee8 fix error for delay deleting 2019-03-20 15:20:31 +01:00
Anton Ignatov 55c93922ea markup fixes 2019-03-20 14:46:54 +01:00
Anton Ignatov 07c2819163 refactoring tinymce image uploading 2019-03-20 14:46:54 +01:00
Mojca Lorber 4f9814b884 Merge branch 'features/global-activities' of github.com:biosistemika/scinote-web into ml-sci-3021 2019-03-20 11:03:00 +01:00
Mojca Lorber 42ff1c0a68 fix bug in revert protocol method 2019-03-20 09:43:38 +01:00
Mojca Lorber cd7a87348f Protocol activities refactoring, without tests 2019-03-19 16:12:07 +01:00
Mojca Lorber c476816359 Task activities refactoring, without tests 2019-03-19 15:33:57 +01:00
Urban Rotnik fe35c805b7 Add model breadcrumbs, update activities_helper 2019-03-19 14:01:06 +01:00
aignatov-bio 6eae12efab
Updating permission check for image editing [SCI - 3153, 3159] (#1568) 
*Add permission check for assets editing

* Add check for image format
 2019-03-19 13:52:57 +01:00
Oleksii Kriuchykhin 0c71493fdb Add viewing permissions for global activities [SCI-2997] 2019-03-18 15:38:19 +01:00
Urban Rotnik 2ea2700837 fixup! Fix failing tests 2019-03-15 10:30:51 +01:00
Urban Rotnik 3f18166320 Add Task and TaskTags activities 2019-03-12 09:15:06 +01:00
Urban Rotnik b33e95e18a New Protocols actions logging 2019-03-12 09:14:53 +01:00
Urban Rotnik 3992336db9 Add type and value_for attributes to user hash 2019-03-11 08:37:22 +01:00
Urban Rotnik b8e84b5685 Add logic for saving message items values and types 2019-03-11 08:37:22 +01:00
Urban Rotnik 117944117b Add service for activity creation 2019-03-11 08:36:15 +01:00
Alex Kriuchykhin ec1aec3bf1
Merge pull request #1556 from okriuchykhin/ok_SCI_3048 
Fix local storage file download links [SCI-3048]
 2019-03-07 16:58:30 +01:00
Oleksii Kriuchykhin 0c99ea9c5c Fix local storage file download links [SCI-3048] 2019-03-07 16:46:05 +01:00
Oleksii Kriuchykhin 8cc95bf491 Embed tables JS files to main HTML of Export All [SCI-3151] 2019-03-07 14:23:10 +01:00
Oleksii Kriuchykhin 2b239e2f35 Fix JS files inclusion in export all report [SCI-3150] 2019-03-07 11:14:38 +01:00
aignatov-bio ec2dbb897f
Adding side pane filter and top pane tags [SCI - 3008, 3009, 3010, 3011, 3012, 3018, 3019, 3020] (#1521) 
* Adding side pane filtering and top pane
 2019-03-06 10:34:04 +01:00
Alex Kriuchykhin 985820a97c
Merge pull request #1527 from okriuchykhin/ok_SCI_3101 
Move templates project creation for new team to delayed job [SCI-3101]
 2019-03-01 13:55:49 +01:00
Miha Mencin 576520659c
Merge pull request #1532 from biosistemika/mm-sci-3031-remove-duplicated-relations 
added uniquness validator and index on user_projects and user_teams r…
 2019-02-27 19:53:25 +01:00
Miha Mencin 51b3aea49a added uniquness validator and index on user_projects and user_teams relations 
finxing typo, fixied failing test

fixing mistakenly commited file

fixing schema to include bigint migration
 2019-02-27 15:09:47 +01:00
Anton Ignatov a6666c688c Adding check for user tutorial 2019-02-27 13:55:46 +01:00
Oleksii Kriuchykhin 74a60d443d Merge branch 'features/global-activities' into ok_SCI_3014_v2 2019-02-26 13:46:25 +01:00
Oleksii Kriuchykhin a0d2f7c676 Move templates project creation for new team to delayed job [SCI-3101] 2019-02-26 13:32:00 +01:00
Oleksii Kriuchykhin 61147b480c Add main global activities bussiness logic [SCI-3014] 2019-02-26 11:01:15 +01:00
Urban Rotnik 5a123d26ac Activity model update 2019-02-26 07:15:05 +01:00
Urban Rotnik 3ad6cee766 Fix tests, remove nullable field 2019-02-25 16:50:38 +01:00
Urban Rotnik 5b5c6c7122 Changes to Activity model 2019-02-25 16:49:55 +01:00
Jure Grabnar f9cb8c8803 Add utc conversion to due_date 2019-02-22 10:47:39 +01:00
Jure Grabnar 87dcf301fb Change due_date calculation to DateTime#end_of_day 2019-02-22 10:23:12 +01:00
Jure Grabnar 96f2da1e8b Shift due day calculations for 1 day 
Closes SCI-3069.
 2019-02-22 08:01:15 +01:00
Miha Mencin bcd0b433b6
Merge pull request #1514 from biosistemika/features/system-notifications 
Features/system notifications
 2019-02-21 16:38:58 +01:00
aignatov-bio 5f78d83f9c
Changing status from unread to read system notification is not correct one [SCI-3077 and SCI-3075] (#1513) 
* fix dropdown apperance

* Remove search and fix duplicate bug

* Fix specs for new method
 2019-02-21 16:15:13 +01:00
aignatov-bio 5fdba554d2
Merge pull request #1510 from biosistemika/features/system-notifications 
Features/system notifications
 2019-02-20 17:22:57 +01:00
Urban Rotnik 82ea31e275 Add validation limits for system notification fields 2019-02-20 16:05:15 +01:00
Urban Rotnik 7b6c6c414d Merge branch 'master' into features/templates 2019-02-19 14:46:15 +01:00
aignatov-bio fcdb4e7a92
Merge pull request #1500 from biosistemika/features/system-notifications 
Features/system notifications
 2019-02-19 13:51:18 +01:00
Urban Rotnik f63eaaefe7 Add user_system_notification records when syncing notifications, update email sending 2019-02-19 11:22:58 +01:00
Urban Rotnik 29d77ca81d Add system_notification sending email feature 2019-02-19 11:20:25 +01:00
aignatov-bio 8e905b67b2
System notification navbar menu drop down [SCI 2955] (#1498) 
* Add dropdown menu and icon for system notifications
* Finish system notification dropdown menu and add tests
 2019-02-19 11:08:59 +01:00
aignatov-bio c598541e09
System notification modal window [SCI-2957 and SCI-2958] (#1484) 
* Added new system notification modal

* Adding loading system notification on sign in
 2019-02-15 13:07:29 +01:00
Alex Kriuchykhin 185e3b4832
Merge pull request #1495 from okriuchykhin/ok_SCI_3039 
Create templates project when syncing templates if team doesn't have it [SCI-3039]
 2019-02-14 17:40:01 +01:00
Mojca Lorber 343a46584f Rename scope 2019-02-14 14:54:04 +01:00
Mojca Lorber 0e14c126e5 Add scope instead of method for active my_module_group 2019-02-14 10:53:48 +01:00
Urban Rotnik 9f3187abdf Add service for sync system notifications 2019-02-13 15:48:15 +01:00
Oleksii Kriuchykhin da30d187a6 Create templates project when syncing templates if team doesn't have it [SCI-3039] 2019-02-13 15:17:33 +01:00
mlorb 71e4cc4dbd
Merge branch 'master' into ml-sci-2940 2019-02-13 14:35:03 +01:00
Mojca Lorber 0adb8b2b61 Fix failing tests 2019-02-13 14:31:26 +01:00
aignatov-bio 5c85595ab4
System Notifications - View All Page [SCI-2956 and SCI-3001] (#1482) 
* System notification view and notification partial (SCI 2956 and SCI 3001)
 2019-02-13 13:06:14 +01:00
Oleksii Kriuchykhin fdff69f22e Add comment for Tika start up code [SCI-2967] 2019-02-07 11:06:25 +01:00
Oleksii Kriuchykhin 13c4bd25af Optionally disable Tika background mode through env variable [SCI-2967] 2019-02-04 16:47:29 +01:00
mz3944 a315808d58
Merge pull request #1473 from mz3944/mz-SCI-2918 
In html project export there is formula instead of result in table [SCI-2918]
 2019-02-01 04:49:14 +01:00
Urban Rotnik 8ebb7561d9 Add last_time_changed_at columnd to SystemNotifications 2019-01-31 16:44:20 +01:00
Matej Zrimšek ac78c7d21b Process Handsontable formulas in project HTML files in team export [SCI-2918] 2019-01-31 07:39:17 +01:00
Urban Rotnik 6f7fcb0831 Refactor method clone_experiment_as_template into service object 
[SCI-2925]
 2019-01-31 07:13:40 +01:00
Oleksii Kriuchykhin cc92de3726 Merge latest features/templates [SCI-2939] 2019-01-30 10:43:54 +01:00
Urban Rotnik 3e2c9934d0 Add SystemNotification model 
- SystemNotifiction model with spec
- UserSystemNotification model for many-many association
 2019-01-29 11:40:26 +01:00
Urban Rotnik 4cf12d12d1 Refactor 'move_experiment' method into service object 
Jira Ticket: SCI-2926
 2019-01-28 11:45:36 +01:00
Oleksii Kriuchykhin 05edfae766 Fix failing tests [SCI-2939] 2019-01-25 14:13:00 +01:00
Urban Rotnik 247bae8a9f Refactor export_all_counter increasing/reseting logic 
- Remove daily task
- Add method to user Model
 2019-01-25 11:16:31 +01:00
Oleksii Kriuchykhin bd2efa55ac Add templates business logic [SCI-2939] 2019-01-25 10:55:08 +01:00
Mojca Lorber fa1dff6352 refactor Demo project generation 2019-01-24 13:40:53 +01:00
mz3944 f6c8af105d
Merge pull request #1434 from mz3944/mz-SCI-2903 
Fix (unite) Date and Time display formats [SCI-2903]
 2019-01-21 09:50:34 +01:00
Urban Rotnik f1d59e65f3 Add module and rename service object 2019-01-18 16:56:33 +01:00
Urban Rotnik 47cc6a9d10 Refactor workflow_image_generation and move to service class 2019-01-18 16:56:33 +01:00
Urban Rotnik 686f10cbd0 Refactor instance method 'ordered_modules' to scope 2019-01-18 16:56:33 +01:00