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729 commits

Author SHA1 Message Date
zmagod
d1477179b2 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1499 2017-09-18 15:10:52 +02:00
zmagod
83647d81b4 adds edit team name modal 2017-09-15 14:00:48 +02:00
Toni Dezman
d38f4343f2 Decupling redux part 1 2017-09-14 11:46:49 +02:00
zmagod
705d07f60e adds remove team action 2017-09-13 17:11:51 +02:00
zmagod
1b3b3dfea9 adds team members update role functionality 2017-09-12 17:30:13 +02:00
Toni Dezman
67d617deb5 adds hound_bot's and zmagos suggestions 2017-09-07 13:40:53 +02:00
Toni Dezman
185039bc99 adds suggestions from code review 2017-09-04 15:00:26 +02:00
zmagod
9c01ab414c refactor leave team 2017-09-01 17:10:43 +02:00
zmagod
91d2d8a935 adds team details view 2017-08-31 15:56:55 +02:00
Toni Dezman
4034400c42 Merge branch 'decoupling-settings-page' into td_SCI_1565 2017-08-31 11:42:15 +02:00
Toni Dezman
8b61fe563c user preferences APIs 2017-08-31 11:23:44 +02:00
zmagod
1325732b0c adds specs for team controller actions 2017-08-30 16:18:21 +02:00
Toni Dezman
2e6a942152 api for timezone 2017-08-30 14:59:17 +02:00
zmagod
ee054f91b8 adds bullet gem [fixes SCI-1578] 2017-08-30 09:29:45 +02:00
Toni Dezman
c82dfa502a adds errors in client_api for users_controller 2017-08-29 13:14:52 +02:00
zmagod
ec86691659 fixed tests 2017-08-29 12:04:00 +02:00
zmagod
c54dd9473e adds controller spec for leave team [fixes SCI-1497] 2017-08-29 11:56:46 +02:00
zmagod
478bd491ff added pagination and sorting to team tables 2017-08-28 17:05:09 +02:00
zmagod
5ea464b675 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1497 2017-08-28 09:36:29 +02:00
Toni Dezman
ea9a195f09 email and password action/redusers work 2017-08-26 14:07:31 +02:00
zmagod
db16da7bd6 adds custom query to fetch teams data 2017-08-25 16:07:37 +02:00
Toni Dezman
ccd14f6b50 adds apis for full_name and initials input fields 2017-08-25 14:45:02 +02:00
Toni Dezman
989be6563f Merge branch 'decoupling-settings-page' into td_SCI_1565 2017-08-25 09:06:38 +02:00
zmagod
782daabce1 first run 2017-08-25 08:54:32 +02:00
Toni Dezman
e4a704d063 namespaces client_api/users/user_controller.rb 2017-08-25 08:21:52 +02:00
zmagod
685cb42aac fixes repository, protocols link, adds csfr token to request headers 2017-08-21 15:30:54 +02:00
zmagod
c5e32c4ea0 Merge branch 'rails-5.1' of https://github.com/biosistemika/scinote-web into merge-rails-5.1-branch 2017-08-21 09:52:14 +02:00
Luka Murn
9227ea5854 Finish the user settings jsonb, also fix references throughout app 
Closes SCI-1475.
 2017-08-10 14:29:01 +02:00
Luka Murn
c62002381b Add default settings migration and concern 2017-08-10 11:30:57 +02:00
zmagod
bd352869a3 adds user account dropdown 2017-08-09 09:08:13 +02:00
zmagod
226458a3f0 adds recent notifications 2017-08-08 15:44:28 +02:00
zmagod
be42cd2204 refactor 2017-08-07 13:51:22 +02:00
Luka Murn
13eae287bb Revert "Add core API using JWT authentication and tests for it [SCI-1507]" 2017-08-07 11:54:45 +02:00
Luka Murn
c6448264d0 Revert "Td sci 1492" 2017-08-07 11:47:21 +02:00
Luka Murn
ae5bccf709 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile.lock
	app/datatables/repository_datatable.rb
	app/models/repository_cell.rb
 2017-08-07 08:45:53 +02:00
Oleksii Kriuchykhin
35b643f34e Fix typo in config and code style improvements [SCI-1507] 2017-08-04 10:19:56 +02:00
Oleksii Kriuchykhin
e958410261 Add core API using JWT authentication and tests for it [SCI-1507] 2017-08-03 17:00:14 +02:00
zmagod
c314bae28d add team switch js/controller 2017-08-03 16:03:15 +02:00
zmagod
2e83322f76 fixes global activities 2017-08-03 11:17:09 +02:00
zmagod
6ef19725f1 adds redux 2017-08-02 17:27:05 +02:00
lenart
e781dfc6a6 Truncate activity taking smart annotations into account fixes [SCI-1249] 2017-08-02 15:51:32 +02:00
zmagod
caae1e2fe8 adds intl, router, bootstrap to npm modules 2017-07-31 10:42:40 +02:00
Toni Dezman
f76512f364 adds hound recomendations for react/settings_controller.rb 2017-07-28 12:53:15 +02:00
Toni Dezman
1673d43993 adds react/settings controller and react/layout 2017-07-27 15:26:03 +02:00
Oleksii Kriuchykhin
6a43483a2f Fix adding and editing repository items [SCI-1519] 2017-07-26 11:22:26 +02:00
Matej Zrimšek
ad0dce921b Fixed error when adding a value to a blank custom repository custum column cell. [SCI-1516] 2017-07-24 18:12:41 +02:00
Oleksii Kriuchykhin
ece27b2652 Fix importing files with empty header cells and error messages improvements [SCI-1484] 2017-07-18 14:54:35 +02:00
Oleksii Kriuchykhin
036ee390ed Fix error messages in repository import and uploading files starting with hyphen[SCI-1484] 2017-07-14 16:19:03 +02:00
Mojca Lorber
739f8b5b4e remove redundant rollback call 2017-07-13 13:49:26 +02:00
Nbernot
2a3e830a3c Merge pull request #732 from biosistemika/business_users 
Business users [SCI-1428, SCI-1447]
 2017-07-11 13:34:56 +02:00
Luka Murn
16e672b9d8 Add VERSION file where the sciNote Core version is stored 2017-07-10 09:26:35 +02:00
lenart
58e2575c75 Truncate checklist items in activity modal [fixes SCI-1249] 2017-07-07 15:56:16 +02:00
Luka Murn
9f60ece25f Merge branch 'master' into rails-5.1 
Conflicts:
	app/models/repository.rb
	app/models/repository_row.rb
	app/views/projects/index.html.erb
	app/views/shared/_secondary_navigation.html.erb
 2017-07-06 15:12:15 +02:00
Nejc Bernot
d917cf3340 Renames the WOPI_BREADCRUMBS_HOST env variable to WOPI_USER_HOST 2017-07-05 11:52:36 +02:00
Nejc Bernot
803934e07d Changes the host for the download and redirect paths 2017-07-05 10:23:10 +02:00
okriuchykhin
75c887ce7d Merge pull request #721 from okriuchykhin/ok_SCI_1412 
Fix activities [SCI-1412]
 2017-07-04 10:59:08 +02:00
zmagod
bc33883c3c first run fixing addons 2017-06-30 10:23:28 +02:00
Oleksii Kriuchykhin
e474cda03a Fix activities [SCI-1412] 2017-06-28 16:49:50 +02:00
Oleksii Kriuchykhin
21cce4baa0 Fix global search [SCI-1411] 2017-06-28 15:44:18 +02:00
okriuchykhin
d126391940 Merge pull request #710 from okriuchykhin/ok_SCI_1356 
Add global search in custom repositories [SCI-1356]
 2017-06-27 13:41:53 +02:00
Oleksii Kriuchykhin
4060ba2ac3 Code style fixes [SCI-1356] 2017-06-27 13:23:51 +02:00
Matej Zrimšek
f847b44067 Error is displayed and import is prevented in case repository name column is not mapped, when importing repository items from file. [SCI-1402] 2017-06-26 16:50:40 +02:00
Oleksii Kriuchykhin
e038bc58fa Add global search in custom repositories [SCI-1356] 2017-06-23 16:12:56 +02:00
zmagod
819f47b450 setup sciNote for Rails 5.1 2017-06-23 15:19:08 +02:00
zmagod
7367435c6d refactor 2017-06-22 17:32:12 +02:00
zmagod
2dd9b6ff19 fix update repository_row 2017-06-22 17:29:17 +02:00
zmagod
590135b9b3 refactor 2017-06-22 17:26:11 +02:00
zmagod
e7328c2e20 fixes row dupplication [fixes SCI-1385] 2017-06-22 16:01:37 +02:00
zmagod
28129ebb73 refactor 2017-06-21 17:39:20 +02:00
zmagod
bad52ceff1 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1336 2017-06-21 15:56:07 +02:00
zmagod
18fd5b00ba fix hound 2017-06-21 15:01:55 +02:00
zmagod
f66fb49b56 adds import records to repositories [fixes SCI-1336] 2017-06-21 14:45:50 +02:00
Matej Zrimšek
d907819de5 Removed byebug calls. [SCI-1383] 2017-06-21 10:49:00 +02:00
zmagod
f64e1ac713 fix locales 2017-06-21 09:31:39 +02:00
Matej Zrimšek
47407ef40c Removed empty first column of repository export file. [SCI-1383] 2017-06-20 18:40:41 +02:00
mlorb
7cbc8a2f95 Merge pull request #694 from mlorb/ml_sci_1347 
Fix flash when deleting samples of other users [SCI-1347]
 2017-06-19 14:19:57 +02:00
mlorb
beaba6a92b Merge pull request #693 from mlorb/ml_sci_1351_v3 
Fix error msg when editing empty cell in repositories [SCI-1351]
 2017-06-19 14:19:27 +02:00
zmagod
70fa681519 split the import service 2017-06-19 14:05:37 +02:00
Mojca Lorber
9b941fe374 fix flash when deleting samples of other users 2017-06-16 17:12:04 +02:00
Mojca Lorber
1b683bc70e fix error msg when editing empty cell in repositories 2017-06-16 15:09:04 +02:00
Mojca Lorber
ea455d3596 fix no repository name in activity bug 2017-06-15 09:43:10 +02:00
Mojca Lorber
e6ec184dba fix multiple errors handling on fields in repositories tables 2017-06-14 13:09:23 +02:00
zmagod
2d3b5f4308 refactor 2017-06-14 10:55:24 +02:00
zmagod
cee052fc19 added service object 2017-06-14 09:11:20 +02:00
Matej Zrimšek
cea6d15d3e Fixed Hound warning. [SCI-1351] 2017-06-13 18:15:47 +02:00
Matej Zrimšek
1bc46fe0cb Reverted the part of the repository row controller code that didn't needed changes. [SCI-1351] 2017-06-13 18:12:42 +02:00
Mojca Lorber
849b269d87 fix errors in repo table 2017-06-13 16:56:34 +02:00
mlorb
074a47aae1 Merge pull request #675 from mlorb/ml_sci_1272 
Fix permissions [SCI-1272]
 2017-06-13 10:51:04 +02:00
zmagod
a865253a2e first run 2017-06-13 08:10:10 +02:00
Matej Zrimšek
e3db79b3cc Added repository permissions check when exporting repository records. Minor repositories refactoring and code style fixing. [SCI-1275] 2017-06-12 17:49:42 +02:00
Mojca Lorber
9108102b42 fix permissions 2017-06-12 17:34:36 +02:00
Matej Zrimšek
f46d8f6970 Refactored a bit repository records CSV export. Fixed the order of CSV rows to match the currently viewed datatable order. [SCI-1275] 2017-06-09 19:44:28 +02:00
Matej Zrimšek
773a55ffac Fixed CSV export of repository records. [SCI-1275] 2017-06-09 19:44:28 +02:00
rekonder
4df8e1ffe3 Fixed bugs with duplicated generated csv, toggle columns and exportig right columns of selected repository 2017-06-09 19:44:28 +02:00
rekonder
ede744849b Export repository [aj-SCI-1275] 2017-06-09 19:44:28 +02:00
Luka Murn
e26337d5ee Merge pull request #671 from biosistemika/custom-repositories 
Merge custom-repositories into master
 2017-06-09 18:46:47 +02:00
Zmago Devetak
4873624cec Merge pull request #658 from ZmagoD/zd_SCI_1011 
Multiple file upload with drag & drop capability in steps and results
 2017-06-09 10:03:33 +02:00
Mojca Lorber
be52af4e4f fix rename/delete/copy modals not working 2017-06-08 15:13:00 +02:00
Mojca Lorber
71c523c406 load tabs with javascript 2017-06-08 13:47:30 +02:00
Luka Murn
2ab31aba2f Merge pull request #660 from Ducz0r/lm-sci-1270 
Copy repository functionality [SCI-1270]
 2017-06-08 11:45:57 +02:00
Luka Murn
61eb52f86f Implement GUI for copying repositories 
Closes SCI.1270.
 2017-06-07 19:11:25 +02:00
Luka Murn
0aee11d6d8 Hound is love, Hound is life #2 2017-06-07 18:26:32 +02:00
Luka Murn
42f7b4f68d Hound is love, Hound is life 2017-06-07 18:22:15 +02:00
Luka Murn
02dd6636ba Allow saving & editing of reports with repository elements 
Closes SCI-1279.
 2017-06-07 16:55:00 +02:00
Luka Murn
b5f6d1da94 Allow custom repositories to be added to reports 2017-06-07 16:54:32 +02:00
Oleksii Kriuchykhin
c18bba9fbe Fix rebase errors [SCI-1274] 2017-06-07 15:50:22 +02:00
Oleksii Kriuchykhin
ad8dd6d740 PR fixes [SCI-1274] 2017-06-07 15:23:25 +02:00
Oleksii Kriuchykhin
8b1190060e Add custom repository table [SCI-1274] 2017-06-07 15:23:25 +02:00
Zmago Devetak
fcec42ae31 Merge pull request #645 from ZmagoD/zd_SCI_1278 
generates samples csv file in background job [fixes SCI-1278]
 2017-06-07 15:04:24 +02:00
zmagod
353c27da15 rename method 2017-06-07 13:51:16 +02:00
zmagod
c6bb20039b adds drag'n drop feature in task results [fixes SCI-1011], [fixes SCI-1310] and [fixes SCI-285] 2017-06-07 13:29:39 +02:00
Mojca Lorber
51c4eeb106 renaming 2017-06-06 15:50:43 +02:00
Mojca Lorber
dde714d78f fix hound 2017-06-06 13:33:57 +02:00
Mojca Lorber
39dda1ad5d refactoring 2017-06-06 13:18:44 +02:00
Mojca Lorber
acdea2198d code changes after rebasing 2017-06-06 11:10:55 +02:00
Mojca Lorber
da98788031 small code fixes 2017-06-06 09:57:50 +02:00
Mojca Lorber
13bf4ad229 create new repository 2017-06-06 09:54:39 +02:00
Matej Zrimšek
afce3010ef After repository deletion, the next selected repository is the first one. [SCI-1269] 2017-06-05 17:56:09 +02:00
Matej Zrimšek
419d638163 Renamed reposiotry edit and destroy permission helper. [fix 1269] 2017-06-05 17:36:26 +02:00
Matej Zrimšek
f012779780 Renamed before_action for repository edit and destroy action. [fix 1269] 2017-06-05 10:02:16 +02:00
Matej Zrimšek
d8d54232c3 After repository renaming user is redirected to the same repository. Removed the unimplemented repository copy dropdown option. [SCI-1269] 2017-06-02 19:08:51 +02:00
Matej Zrimšek
73aaef0949 Fixe repository rename modal submit button. Consistent variable renaming. [SCI-1269] 2017-06-02 17:52:04 +02:00
Matej Zrimšek
5c9a453439 Added permissions for deleting and renaming of repositories. [SCI-1269] 2017-06-02 17:50:34 +02:00
Matej Zrimšek
21a72da84f Added rename logic and improved remove logic. [SCI-1269] 2017-06-02 17:50:34 +02:00
Matej Zrimšek
cdaac6a01b Added remove repository modal logic. [SCI-1269] 2017-06-02 17:50:33 +02:00
Matej Zrimšek
791bb934ca Remove repository modal logic (WIP). [SCI-1269] 2017-06-02 17:50:33 +02:00
zmagod
1c021b11db adds drag and drop files upload to steps [fixes SCI-1310] 2017-06-02 16:34:09 +02:00
Luka Murn
fcc3995049 Merge pull request #647 from biosistemika/master 
Bring latest master changes into custom-repositories
 2017-05-30 14:18:14 +02:00
zmagod
b527afd12b generates samples csv file in background job [fixes SCI-1278] 2017-05-29 14:42:55 +02:00
mz3944
d83dcac894 Merge pull request #642 from mz3944/mz-SCI-1291 
Fixed permission error while cloning workflows. [fixes SCI-1291]
 2017-05-29 09:53:33 +02:00
Matej Zrimšek
853096634d Fixed permission error while cloning workflows. [fixes SCI-1291] 2017-05-26 11:14:50 +02:00
Mojca Lorber
8540f88b7e small fix - renaming of ids and hrefs 2017-05-25 10:06:48 +02:00
Oleksii Kriuchykhin
7310763184 Add missing include [SCI-1306] 2017-05-25 08:57:50 +02:00
mlorb
872f712be8 Merge branch 'custom-repositories' into ml_sci_1266_v2 2017-05-23 11:05:25 +02:00
mz3944
6b8c8deb16 Merge pull request #634 from mz3944/mz-SCI-414 
Uncompleted steps not added to Reports
 2017-05-23 09:58:05 +02:00
mz3944
9fe3b717c8 Merge pull request #626 from mz3944/mz-SCI-487 
Simplify "Add contents to report" popup
 2017-05-23 09:57:39 +02:00
Mojca Lorber
9ae615264d add global repositories screen - tab control 2017-05-22 17:54:30 +02:00
Oleksii Kriuchykhin
e99e3edb7b Add repositories dropdown to task navigation [SCI-1273] 2017-05-18 14:21:00 +02:00
Matej Zrimšek
20265ddd69 Readded result content modal for report creation and updated checkbox hierarchy logic accordingly. [fixes SCI-487] 2017-05-17 18:18:57 +02:00
Matej Zrimšek
f78c80b148 Added possibility to add uncompleted steps to report. [closes SCI-414] 2017-05-17 13:25:21 +02:00
Oleksii Kriuchykhin
f28df506f9 Fix bug in counting search results for assets [SCI-1284] 2017-05-17 09:08:40 +02:00
Matej Zrimšek
ba693c65a8 Fixed adding contents to report logic and removed unneeded code. [fixes SCI-487] 2017-05-15 18:20:42 +02:00
Zmago Devetak
39203a16f4 Merge pull request #622 from ZmagoD/zd_SCI_1261 
fixes remove user action on project [fixes SCI-1261]
 2017-05-15 15:28:39 +02:00
Zmago Devetak
a151bbdd7d Merge pull request #623 from ZmagoD/zd_SCI_974 
adds persistence to experiments order in project overview [fixes SCI-…
 2017-05-15 15:28:18 +02:00
okriuchykhin
16325db1c6 Merge pull request #621 from okriuchykhin/ok_SCI_1263 
Fix sorting in reports [SCI-1263]
 2017-05-15 09:57:35 +02:00
zmagod
c35e2a4860 adds persistence to experiments order in project overview [fixes SCI-974] 2017-05-15 09:54:37 +02:00
okriuchykhin
8e523782d9 Merge pull request #619 from okriuchykhin/ok_SCI_617 
Fixes error when cloning experiments with long names [SCI-617]
 2017-05-12 16:53:38 +02:00
okriuchykhin
a8bbc3c3ba Merge pull request #615 from okriuchykhin/ok_SCI_1008 
Fix task and step ordering in reports [SCI-1008]
 2017-05-12 16:44:57 +02:00
zmagod
b6367981c7 fixes remove user action on project [fixes SCI-1261] 2017-05-12 16:18:53 +02:00
Oleksii Kriuchykhin
5a2d618b1d Fix sorting in reports [SCI-1263] 2017-05-12 16:04:19 +02:00