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Author SHA1 Message Date
aignatov-bio 6206f8a6e9 Update permissions for my_module_comments controller [SCI-6065] 2021-09-22 12:11:36 +02:00
Oleksii Kriuchykhin 5fb163c09a Update/implement permission checks in the _my_modules_tags_ controller [SCI-6062] 2021-09-21 16:21:55 +02:00
aignatov-bio 250a018a4c Add permissions tests for my_module_repositories and my_module_repository_snapshots [SCI-6064] 2021-09-20 12:19:28 +02:00
artoscinote 895509a26c
Merge pull request #3543 from artoscinote/ma_SCI_6056 
Reworked MyModule permissions [SCI-6056]
 2021-09-17 15:19:01 +02:00
Martin Artnik 04413c6cc6 Make permission names consistent with spreadsheet [SCI-6056] 2021-09-17 10:41:28 +02:00
Alex Kriuchykhin 19a8faaf72
Merge pull request #3550 from okriuchykhin/ok_SCI_6058 
Update/implement permission checks in the canvas controller [SCI-6058]
 2021-09-16 13:32:56 +02:00
Alex Kriuchykhin 56af55931c
Merge pull request #3549 from okriuchykhin/ok_SCI_6057 
Update/implement permission checks in the experiments controller [SCI-6057]
 2021-09-16 13:26:33 +02:00
aignatov-bio 2240dc5984
Add new context helper to controllers tests [SCI-6072] (#3546) 2021-09-16 11:52:18 +02:00
Oleksii Kriuchykhin 61d4a96a3f Update/implement permission checks in the experiments controller [SCI-6057] 2021-09-16 09:55:59 +02:00
Oleksii Kriuchykhin 86faf96365 Update/implement permission checks in the canvas controller [SCI-6058] 2021-09-16 09:54:27 +02:00
Oleksii Kriuchykhin 0762323337 Update/implement permission checks in the project related controllers [SCI-6042] 2021-09-15 14:39:47 +02:00
aignatov-bio 97be267260 Add skip my_module flag [SCI-6072] 2021-09-14 13:30:52 +02:00
aignatov-bio a0fef97fbc Update context helper [SCI-6072] 2021-09-14 12:45:44 +02:00
Martin Artnik e8f57e9e99 Reworked MyModule permissions [SCI-6056] 2021-09-14 11:08:35 +02:00
aignatov-bio b4d0a8ff83 Add context helper for project creation [SCI-6072] 2021-09-14 10:10:14 +02:00
aignatov-bio 3036a38bfd
Fix rspec tests [SCI-6044] (#3537) 2021-09-09 15:41:42 +02:00
Martin Artnik 975a8910a8 Updated project permission helpers [SCI-6041] 2021-09-07 11:27:52 +02:00
Martin Artnik ade1385392 Merge branch 'develop' into features/bmt-search 2021-09-06 10:51:04 +02:00
Martin Artnik 7e6ca3be8a Merge branch 'develop' into features/new_permissions 2021-09-06 10:33:32 +02:00
Miha Mencin 50d33896e3
Merge pull request #3480 from artoscinote/ma_SCI_5963 
Downcase all user emails, downcase when finding user [SCI-5963]
 2021-08-30 13:00:12 +02:00
Oleksii Kriuchykhin 0b74f34de7 Add external IDs to repositories [SCI-5990] 2021-08-30 10:49:14 +02:00
Martin Artnik 1b26a4f65a Added access token to protocols.io requests [SCI-5968] 2021-08-26 15:26:35 +02:00
Oleksii Kriuchykhin 33d37d048e Add timestamps to API serializers, allow inclusion of comments [SCI-5983] 2021-08-18 10:00:01 +02:00
Martin Artnik 5d5f406e9a Downcase all user emails, downcase when finding user [SCI-5963] 2021-08-11 13:18:58 +02:00
Martin Artnik 024f9117e6 fix failing specs 2021-08-03 14:16:22 +02:00
Martin Artnik a82af505eb Merge branch 'develop' into features/webhooks 2021-08-02 16:22:52 +02:00
Martin Artnik 67f4e81a3a Merge branch 'develop' into features/new_permissions 2021-07-28 15:16:47 +02:00
Oleksii Kriuchykhin c26dcf4b23 Replace empty? with blank? [SCI-5579] 2021-07-23 11:56:28 +02:00
Martin Artnik 662370d2bd Removed auto-disable, fixed ActiveJob + DelayedJob retry handling [SCI-5800] 2021-07-22 13:43:36 +02:00
Oleksii Kriuchykhin d1208bad0b Merge branch 'develop' into features/new_permissions 2021-07-07 13:44:36 +02:00
Martin Artnik 5f61c6568d Fix report specs [SCI-5859] 2021-07-05 12:34:39 +02:00
Martin Artnik 618f5cfb53 Code style fixes [SCI-5800] 2021-06-30 13:08:16 +02:00
Martin Artnik c6648111f3 Code style fixes [SCI-5800] 2021-06-17 22:00:13 +02:00
Martin Artnik 47071e23a1 Added specs for webhooks 2021-06-17 14:54:30 +02:00
Martin Artnik 4ee50f87d5 Implement webhook service and scheduling jobs [SCI-5801, SCI-5802] 2021-06-17 09:19:04 +02:00
Oleksii Kriuchykhin 7537542c0a Fix API date time serializers [SCI-5816] 2021-06-15 17:12:55 +02:00
zmagoD 7e4f47f667 update experiment and my_module search 2021-06-12 10:27:53 +02:00
zmagoD 8997ba10d1 mark user assigmetns when they are created manually or automatically 2021-06-12 09:36:41 +02:00
Oleksii Kriuchykhin 86fcda3c09 Fix date formatting for the API [SCI-5785] 2021-06-07 10:34:58 +02:00
zmagoD fc7214c2f7 add test scenarios for user assignments propagation jobs 2021-06-06 11:46:16 +02:00
zmagoD 784e43e328 create user_assignments for all child objects when the user is attached to the project 2021-06-06 09:54:47 +02:00
zmagoD 3d79dd32ad update endpoint type 2021-05-31 21:48:18 +02:00
zmagoD debff7bc85 fix code style 2021-05-29 19:25:46 +02:00
zmagoD ffaf141abf fix failing scenarios 2021-05-29 18:40:26 +02:00
zmagoD f1c3bf7cf6 fix failng scenarios and remove uneeded code 2021-05-29 17:25:20 +02:00
zmagoD 28cb7ee81d add user roles enpoint and update scenarios 2021-05-29 15:28:10 +02:00
zmagoD 7e6789200a fix new API endpoints and add test cases 2021-05-23 17:31:02 +02:00
zmagoD 300c1521fd add new API endpoints and fix/update ExperimentMember and MyModuleMember modules 2021-05-22 18:36:30 +02:00
zmagoD be94cb09c2 fix code style 2021-05-22 14:41:56 +02:00
zmagoD 67cf09e030 log activities on experiment and my_module assignment change 2021-05-22 13:59:27 +02:00
Oleksii Kriuchykhin 29c83ffbb1 Merge branch 'develop' into features/new-reports 2021-05-21 11:04:17 +02:00
zmagoD 6910eafa37 remove uneeded spec 2021-05-16 12:03:59 +02:00
zmagoD de4c28069a fix experiment level styling issues and update the dropdown placeholerds 2021-05-16 11:04:04 +02:00
zmagoD 5ee38966a0 Merge branch 'features/new_permissions' of https://github.com/biosistemika/scinote-web into new_perimssions-managing-project-ui 2021-05-11 08:36:39 +02:00
zmagoD ab47c8695f add read permission and controller tests for new endpoints 2021-05-09 18:23:50 +02:00
zmagoD c0eb38b564 Merge branch 'develop' of https://github.com/biosistemika/scinote-web into features/new_permissions 2021-05-08 10:33:43 +02:00
miha 47f64fb711 Update the tests for 2fa 2021-05-05 10:40:52 +02:00
Oleksii Kriuchykhin 1abc0dc1eb Fix tests [SCI-5636] 2021-05-03 13:03:26 +02:00
zmagoD c1d98f421d update scenarios and UI logic to handle project page reload after modal close 2021-05-02 11:22:59 +02:00
zmagoD 3333241c9a add CTA for project members modal SCI-5645 2021-04-18 12:23:29 +02:00
miha 56ebc3dc07 [SCI-5635] add a migration to fix broken steps, fix the api so it sets last_modified_by_id, minor step model refactor 
migration fix

remove the conditoin for set_last_modified_by callback

set the last_modified_by_id in before_save callback (in case it is not set yet)

remove trailing spaces

Set last modified in protocl import service
 2021-04-12 09:59:00 +02:00
Oleksii Kriuchykhin 2b2b6f7774 Fix for API float parsing in the inventory number type column [SCI-5604] 2021-03-29 15:59:24 +02:00
miha 3cc4326eb7 fix code style 2021-03-29 10:59:38 +02:00
miha 8f0713229a add basic tests 2021-03-29 10:52:02 +02:00
aignatov-bio 0c5a1a3e21 Fix tests [SCI-5528] 2021-02-26 16:29:56 +01:00
Oleksii Kriuchykhin 7d89088b14 Multiple small bugfixes [SCI-5494] 2021-02-18 13:55:03 +01:00
Miha Mencin 107b7a0427
Merge pull request #3114 from urbanrotnik/ur-sci-5417-folders-name-uniquness-scope 
Add Archived to ProjectFolder name uniqueness scope [SCI-5417]
 2021-02-05 09:59:40 +01:00
Oleksii Kriuchykhin 1e3e701788 Add models for new permissions objects [SCI-5434] 2021-02-04 14:08:20 +01:00
Oleksii Kriuchykhin 324c268594 Remove Demo project and Samples repository [SCI-5246][SCI-5248] 2021-02-01 15:02:06 +01:00
aignatov-bio 8be9d3b14c
Merge pull request #3126 from biosistemika/features/new-experiments-page 
Features/new experiments page
 2021-01-29 13:28:11 +01:00
Oleksii Kriuchykhin 75da67b937 Update Rails to 6.1.1, ruby to 2.7.2 [SCI-5459] 2021-01-28 14:43:45 +01:00
Alex Kriuchykhin f1124f9ea0
Add experiments overview service [SCI-5430] (#3116) 2021-01-28 12:57:04 +01:00
Urban Rotnik ebbbfa657c
Fix folders activities [SCI-5402] [SCI-5403] (#3112) 
* Fix activities and make folders clickable

* Remove archive project activity and action

* Save nil value for root folder

* Add empty values to hash
 2021-01-22 11:24:08 +01:00
Urban Rotnik 68ac663370 Add Archived to ProjectFolder name uniqueness scope 
SCI-5417
 2021-01-22 08:56:43 +01:00
Urban Rotnik 91f016939d Fix tests for result deletion 
SCI-5429
 2021-01-20 09:17:02 +01:00
Urban Rotnik 60a1e602e0 Add ProjectFolders relation to Folder serializer 2021-01-12 17:09:39 +01:00
Urban Rotnik 1070e813fc Add helper for archived_on date 2021-01-12 15:35:35 +01:00
Urban Rotnik 2a3bafd6a0 Add fallback archived_on and archived_by columns to parent for MyModule and Experiment [SCI-5362] 2021-01-12 14:53:06 +01:00
Urban Rotnik f478ad91c3
Merge pull request #3058 from urbanrotnik/ur-sci-5312 
Folder name uniqueness validation on folder level and renaming [SCI-5312]
 2021-01-08 10:40:52 +01:00
Urban Rotnik fbce70be0c Add unique validation and ensure_uniqueness callback while moving folder 
[SCI-5312]
 2021-01-08 08:21:09 +01:00
Urban Rotnik be2949b316 Fix tests 2021-01-08 08:05:05 +01:00
Urban Rotnik 427b5d7107
Merge pull request #3059 from biosistemika/features/folders 
Features/folders into develop
 2021-01-08 06:26:44 +01:00
Urban Rotnik 20acd9b693 Fix controller and tests 2021-01-07 17:41:39 +01:00
Oleksii Kriuchykhin 58cce0f153 Improve task restoring and refactor flash messages [SCI-5341] 2021-01-04 17:00:23 +01:00
Urban Rotnik 4ff1770d50 Remove uniqueness validation on Experiment name 
SCI-5288
 2020-12-18 16:48:50 +01:00
Oleksii Kriuchykhin 67b3f853d7 Merge branch 'develop' into features/folders 2020-12-18 14:51:21 +01:00
Urban Rotnik ad8cf8a1fa Refactor result permissions 2020-12-14 12:50:54 +01:00
Oleksii Kriuchykhin 94b6c96e48 Remove the 'Archived tasks' tab and refactor sidebar to include archived [SCI-5273] 2020-12-12 22:46:30 +01:00
Urban Rotnik 1332ad2fcd Fix project creation activity [SCI-5181] 2020-12-04 14:13:43 +01:00
Urban Rotnik 7773afbcdb Add activities for Project Folders [SCI-5181] 2020-12-04 12:03:49 +01:00
Alex Kriuchykhin 92d579ab8e
Merge pull request #2935 from okriuchykhin/ok_SCI_5135 
Generate backend for moving the projects and folders [SCI-5135]
 2020-12-02 14:59:01 +01:00
Urban Rotnik 87b5552b27 Add equals team validations for project and folder 2020-12-02 14:53:46 +01:00
Urban Rotnik df2b8ab3df Remove jsonapi_parameters gem, accept rails params in controller 2020-12-02 13:15:49 +01:00
Urban Rotnik 7c1a0a9044 Add projects to project_folder serializer 2020-12-02 13:15:49 +01:00
Urban Rotnik 97733498d9 Include project_folders at Projects API endpoints 2020-12-02 13:15:48 +01:00
Urban Rotnik a4fc01d595 Add jsonapi_parameters gem, use relationships for parent_folder relation 2020-12-02 13:15:48 +01:00
Urban Rotnik 088fa79874 Add Project Folders API endpoints 2020-12-02 13:15:48 +01:00
Oleksii Kriuchykhin dfce57d481 Generate backend for moving the projects and folders [SCI-5135] 2020-12-02 12:11:01 +01:00
Alex Kriuchykhin 7b17d9d54d
Merge pull request #2971 from okriuchykhin/ok_SCI_5238 
Improve limit check for repository list and checklist items [SCI-5238]
 2020-11-30 19:59:46 +01:00
Oleksii Kriuchykhin 8ee1580ae4 Fix tests for repository list and checklist items [SCI-5238] 2020-11-27 14:59:17 +01:00
Urban Rotnik 5717e37f2b Remove obsolete code, fix tests 2020-11-25 18:34:46 +01:00
Oleksii Kriuchykhin eafc4cf367 Fix permission check for archived tasks [SCI-5235] 2020-11-20 14:39:17 +01:00
Oleksii Kriuchykhin 038cd8d5d7 Fix repository state columns handling [SCI-5190] 2020-11-10 17:24:04 +01:00
Alex Kriuchykhin 8566d56b68
Merge pull request #2928 from okriuchykhin/ok_SCI_5126 
Create database structure for project folders [SCI-5126]
 2020-11-02 11:46:15 +01:00
Oleksii Kriuchykhin bb1d9e883f Add ProjectFolder factory and specs [SCI-5126] 2020-11-01 23:07:57 +01:00
Urban Rotnik f5118e5461
Merge pull request #2901 from okriuchykhin/ok_SCI_5063 
Refactor experiment workflow image generation [SCI-5063]
 2020-10-29 13:55:23 +01:00
Urban Rotnik c6a891bcea
Merge pull request #2912 from urbanrotnik/ur-sci-5091 
Add current team to smart annotations permission check [SCI-5091]
 2020-10-29 13:32:29 +01:00
Oleksii Kriuchykhin 13fcfedf41 Refactor experiment workflow image generation [SCI-5063] 2020-10-29 13:16:09 +01:00
Urban Rotnik 25d050cec4 Add current team to smar annotations permission check 2020-10-29 12:17:40 +01:00
Urban Rotnik b94a3a6cb8 Clean up controller 2020-10-26 16:17:39 +01:00
Urban Rotnik aa1520bfb8 Merge branch 'develop' into jg_sci_2228 2020-10-22 14:21:39 +02:00
Urban Rotnik a19e0ef846 Refactor 2020-10-13 14:23:39 +02:00
Urban Rotnik dfca798e2d Refactored tiny_mce_table parser and renderer 2020-10-09 09:43:36 +02:00
Urban Rotnik 92b4d95c72 Implement lists in DOCX 2020-10-09 09:43:00 +02:00
Alex Kriuchykhin 3eb448c39b
Merge pull request #2862 from okriuchykhin/ok_SCI_5001 
Add Endpoins for Project Membership manipulation [SCI-5001]
 2020-09-25 14:25:20 +02:00
Urban Rotnik a9d8d008a3 Fix tests 2020-09-23 13:05:17 +02:00
Oleksii Kriuchykhin 2cda80dc5f Add Endpoins for Project Membership manipulation [SCI-5001] 2020-09-23 11:03:29 +02:00
Alex Kriuchykhin 136ce06022
Merge pull request #2851 from okriuchykhin/ok_SCI_4999 
Add Create and Update endpoints for experiments [SCI-4999]
 2020-09-22 10:20:00 +02:00
Alex Kriuchykhin e19efe3975
Merge pull request #2850 from okriuchykhin/ok_SCI_4997 
Add Create and Update endpoints for projects [SCI-4997]
 2020-09-21 13:22:12 +02:00
aignatov-bio e5d3fac112 Merge branch 'features/smart-annotation-improvements' into develop 2020-09-17 14:52:51 +02:00
aignatov-bio 6ed8757eb1 Merge branch 'features/task-flows' into develop 2020-09-17 14:52:05 +02:00
Oleksii Kriuchykhin 0147e1aee1 Add Create and Update endpoints for experiments [SCI-4999] 2020-09-16 23:15:36 +02:00
Oleksii Kriuchykhin dd4a62bb45 Add Create and Update endpoints for projects [SCI-4997] 2020-09-16 17:03:39 +02:00
Oleksii Kriuchykhin 57716fd89c Fix API and tests for new task completion logic [SCI-5004] 2020-09-15 11:19:25 +02:00
Urban Rotnik 0ae39678d4
Merge pull request #2832 from urbanrotnik/ur-sci-4982-lock-state 
Add error message for locked task, update some permission checks[SCI-4982]
 2020-09-09 14:04:08 +02:00
Urban Rotnik 45a09e5a3c Fix tests 2020-09-09 13:17:07 +02:00
Alex Kriuchykhin c413ac21a1
Merge pull request #2798 from aignatov-bio/ai-sci-4831-update-api-for-new-statuses 
Add API endpoints for workflows [SCI-4831]
 2020-09-08 16:23:05 +02:00
aignatov-bio 97db1e0e1c Fix tests 2020-09-08 14:57:26 +02:00
Mojca Lorber 0eb81065b3 Fix tests 2020-09-08 09:39:15 +02:00
aignatov-bio 4c7312faf9 Add tests for new workflow endpoints 2020-09-02 11:43:00 +02:00
aignatov-bio e1229f5606 Fix test and status validations 2020-09-01 14:49:58 +02:00
Urban Rotnik 581cd69963 Add activities for status change 2020-09-01 11:48:04 +02:00
Urban Rotnik b6e68ec1e2 Remove tests 2020-08-31 16:56:40 +02:00
Urban Rotnik a259800590 Merge branch 'develop' into jg_sci_2228 2020-08-31 16:29:23 +02:00
Urban Rotnik fb8f69c3e4 Revert controllers spec 2020-08-27 13:49:32 +02:00
Mojca Lorber 6fefd4d945 Add factories for new task flows models 2020-08-27 13:38:32 +02:00
Urban Rotnik a5fb873d19 Add default workflow 2020-08-27 10:54:39 +02:00
Oleksii Kriuchykhin ed2eb81c68 Switch to position swapping when updating step position [SCI-4880] 2020-08-25 15:46:23 +02:00
Urban Rotnik 7c14da70d9
Merge branch 'features/task-flows' into develop_to_task_flows 2020-08-04 14:50:46 +02:00
Alex Kriuchykhin 22015beeb5
Merge pull request #2757 from urbanrotnik/ur-sci-4813-base64-multipart-upload 
Extend asset API upload to support base64 [SCI-4813]
 2020-08-04 09:43:01 +02:00
Urban Rotnik 9b06510dcc Update PUT result file endpoint, refactor 2020-08-03 15:14:58 +02:00
Oleksii Kriuchykhin 1a8333612a Merge branch 'features/pwa' into develop 2020-07-27 09:47:41 +02:00
Urban Rotnik 4958139699 Extend asset API upload to support base64 2020-07-24 14:57:03 +02:00
Urban Rotnik 025378cd0e Fix translations and JS 2020-07-23 15:53:46 +02:00
Alex Kriuchykhin 26cfa001c8
Merge pull request #2747 from urbanrotnik/ur-sci-4769-canvas-test 
Add test for canvas_controller [SCI-4769]
 2020-07-23 15:18:01 +02:00
Urban Rotnik aecd6b228b
Merge pull request #2744 from urbanrotnik/ur-sci-4764-increase-characters-limit-for-rte 
Increase chars limit for RTE [SCI-4764]
 2020-07-23 12:58:36 +02:00
Urban Rotnik 512d6f3229 Add actions for update status, clean old complete actions 2020-07-22 16:12:34 +02:00
aignatov-bio ddfe8231d8 Merge branch 'features/2fa' into develop 2020-07-22 11:56:36 +02:00
Oleksii Kriuchykhin 809e0c7d77 Fix tests for MyModule [SCI_4825] 2020-07-21 16:20:19 +02:00
Urban Rotnik 3232b4d6bf Add test for canvas_controller 2020-07-21 13:49:59 +02:00