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6013 commits 31 branches 181 tags 166 MiB
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300 commits

Author SHA1 Message Date
Oleksii Kriuchykhin
5c999300b5 Fix avatar upload validators [SCI-2253] 2018-07-27 17:26:46 +02:00
Oleksii Kriuchykhin
b2bd1cb849 Upgrade to Turbolinks 5 [SCI-2253] 2018-07-27 17:26:46 +02:00
Oleksii Kriuchykhin
6669beaf0e Change icons throughout the rest of application [SCI-2445] 2018-07-27 15:27:08 +02:00
zmagod
e654725d9e fixes smart annotation serch queries/dropdown item picker [fixes SCI-2511] 2018-07-06 14:26:20 +02:00
Oleksii Kriuchykhin
a169639b3c Fix uploaded file max size validation in JS [SCI-2590] 2018-07-05 15:23:26 +02:00
zmagod
db1944cc90 move maximum file size limit to an ENV variable [fixes SCI-2415] 2018-06-19 14:15:14 +02:00
Zmago Devetak
a8981d7039
Merge pull request #1201 from ZmagoD/zd_SCI_2421 
fixes bug with tinymce/at.js [fixes SCI-2421]
 2018-06-13 11:14:17 +02:00
Zmago Devetak
6cab1746cd
Merge pull request #1202 from ZmagoD/zd_SCI_2392 
prevents asset preview modal to close on click [fixes SCI-2392]
 2018-06-13 08:41:41 +02:00
mlorb
40f3365596 fix bug with truncating string 2018-06-11 14:47:25 +02:00
zmagod
32a09f9780 prevents asset preview modal to close on click [fixes SCI-2392] 2018-06-11 13:03:11 +02:00
zmagod
374a16abad fixes bug with tinymce/at.js [fixes SCI-2421] 2018-06-11 10:18:35 +02:00
zmagod
712a3c7ff6 fixes css, changes spinner in preview modal 2018-05-16 10:40:49 +02:00
zmagod
e5c3fb6af2 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2321 2018-05-10 10:38:56 +02:00
zmagod
38869ec037 adds title on disabled download file link 2018-05-10 09:47:10 +02:00
zmagod
66b676b5ce Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2321 2018-04-26 17:04:36 +02:00
zmagod
0afe461962 fixes download link 2018-04-26 17:00:51 +02:00
mlorb
f97477f3f0 some extra button styling 2018-04-26 15:19:05 +02:00
mlorb
763d934aa7 fix buttons again 2018-04-26 15:02:24 +02:00
Luka Murn
cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
zmagod
c2d19fee52 fixes images preview in repository/library [fixes SCI-2321] 2018-04-24 13:11:55 +02:00
Luka Murn
fa603b54b8
Merge pull request #930 from okriuchykhin/ok_SCI_1860 
Remove tutorial [SCI-1860]
 2018-04-12 14:46:20 +02:00
Luka Murn
9bf8b5d864 Merge branch 'ok_SCI_1860' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_1860 
Conflicts:
	Makefile
	app/assets/javascripts/projects/index.js.erb
	app/assets/stylesheets/themes/scinote.scss
	config/locales/en.yml
 2018-04-12 13:16:46 +02:00
zmagod
233e73c709 adds asset preview link to repository row modal and to table row item [fixes SCI-2110] 2018-04-10 17:06:53 +02:00
zmagod
ea4bd8831f fixes bug with CSRF on file upload, fixes turbolink issues with remote form submition [fixes SCI-2284] 2018-04-10 13:19:53 +02:00
zmagod
cf7761daaa Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into ok_SCI_2223 2018-04-06 12:56:39 +02:00
Oleksii Kriuchykhin
8ee98b7cf0 Update Capybara and dependencies [SCI-2217] 2018-04-04 14:13:37 +02:00
Oleksii Kriuchykhin
51860652c1 Refactor smart annotations modal [SCI-2223] 2018-04-02 20:38:56 +02:00
Oleksii Kriuchykhin
cc5d8550b1 Refactor file preview modal [SCI-2217] 2018-03-30 11:50:28 +02:00
Oleksii Kriuchykhin
a105e61d48 Remove tutorial [SCI-1860] 2018-03-18 13:18:05 +01:00
zmagod
a6a25bbe08 add floating alert message 2018-03-13 16:33:48 +01:00
zmagod
2b55cd7090 rename variables 2018-03-02 14:14:27 +01:00
zmagod
e3ca782996 add info modal for repository items [fixes SCI-2066] 2018-02-27 16:21:46 +01:00
zmagod
bd1345d560 fixes bug with assets upload on task result page, 
adds ctrl+v listener to upload images from clipboard, adds image preview modal
 2018-02-06 15:39:19 +01:00
zmagod
f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
Oleksii Kriuchykhin
89230bd730 Fix about modal [SCI-1875] 2017-12-22 18:27:20 +01:00
Oleksii Kriuchykhin
afb579bef1 Fix invite users dropdown [SCI-1893] 2017-12-21 16:49:10 +01:00
okriuchykhin
b3b0e367e8
Merge pull request #889 from okriuchykhin/ok_SCI_1747 
Improve server side assets validation display for steps [SCI-1747]
 2017-12-04 14:12:43 +01:00
Oleksii Kriuchykhin
745dac09a7 Improve clean-up of dropped files [SCI-1747] 2017-11-28 16:48:47 +01:00
Oleksii Kriuchykhin
e35031dd9a Small code fixies [SCI-1747] 2017-11-28 11:34:57 +01:00
zmagod
d200e355ed follow @Ducz0r 's suggestions 2017-11-24 11:45:07 +01:00
Oleksii Kriuchykhin
fe8b7d26c1 Improve server side assets validation display for steps [SCI-1747] 2017-11-21 13:48:06 +01:00
Mojca Lorber
ff998a6c98 change text for avatar size on my profile page 2017-11-15 14:21:04 +01:00
Oleksii Kriuchykhin
631b41cdaa Improve error handling in file uploads [SCI-1609][SCI-1612][SCI-1551] 2017-10-19 11:38:23 +02:00
Mojca Lorber
a0f7030a70 fix bug with tinyMCE text validaton 2017-09-07 14:54:12 +02:00
Zmago Devetak
69919359f1 Merge pull request #738 from ZmagoD/zd_SCI_1452 
fixes issue with smart annotations in repositories [fixes SCI-1452]
 2017-07-12 14:50:29 +02:00
zmagod
baaec67399 fixes issue with smart annotations in repositories [fixes SCI-1452] 2017-07-10 16:22:32 +02:00
Luka Murn
3e80f761b8 Add "about" modal, prepare hooks, VERSION system for addons 
Also the addon generator is fixed so it properly creates VERSION
file for new addons.
 2017-07-10 15:27:50 +02:00
zmagod
6dd85d6c39 fixes drag'n drop bug in results on safari [fixes SCI-1370] 2017-06-14 09:45:49 +02:00
Luka Murn
e26337d5ee Merge pull request #671 from biosistemika/custom-repositories 
Merge custom-repositories into master
 2017-06-09 18:46:47 +02:00
zmagod
33b996ffee refactor 2017-06-09 09:49:57 +02:00
zmagod
c6bb20039b adds drag'n drop feature in task results [fixes SCI-1011], [fixes SCI-1310] and [fixes SCI-285] 2017-06-07 13:29:39 +02:00
Mojca Lorber
51c4eeb106 renaming 2017-06-06 15:50:43 +02:00
Matej Zrimšek
2c6ad4aa05 Refactored modal popups for repositories to make them general. [fix 1269] 2017-06-05 14:13:24 +02:00
zmagod
67d902db52 refactor 2017-06-05 10:43:58 +02:00
Matej Zrimšek
c82fd66146 Removed unneeded utility JS function. [SCI-1269] 2017-06-02 17:52:04 +02:00
Matej Zrimšek
791bb934ca Remove repository modal logic (WIP). [SCI-1269] 2017-06-02 17:50:33 +02:00
Matej Zrimšek
20265ddd69 Readded result content modal for report creation and updated checkbox hierarchy logic accordingly. [fixes SCI-487] 2017-05-17 18:18:57 +02:00
Matej Zrimšek
79ec3b5e4c Selected all checkboxes by default for result content adding modal and added disabling logic for dependent checkboxes. [fixes SCI-487] 2017-05-15 18:20:42 +02:00
Matej Zrimšek
901558c733 Made checkbox logic sitewide available and applied it to other content adding modals in report aswell. [fixes SCI-487] 2017-05-15 18:20:42 +02:00
zmagod
9bec7dd96e Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1248 2017-05-15 14:49:37 +02:00
zmagod
a4032f5cc6 first run 2017-05-10 13:53:32 +02:00
Oleksii Kriuchykhin
52ad5ecdc2 Fix error messages display during file upload in steps and results [SCI-1235] 2017-05-09 17:13:47 +02:00
okriuchykhin
bd0b930382 Merge pull request #598 from okriuchykhin/ok_SCI_152 
Add counters for users and comments on canvas [SCI-152]
 2017-05-09 10:22:53 +02:00
Oleksii Kriuchykhin
344b9c290a Add counters for users and comments on canvas [SCI-152] 2017-05-08 17:32:55 +02:00
Zmago Devetak
4b816f5322 Merge pull request #568 from ZmagoD/zd_SCI_1119 
Add images to fields with rich text formatting
 2017-05-08 13:06:58 +02:00
zmagod
5b58824ec0 refactor 2017-05-03 15:30:08 +02:00
ajugo
081aa4aea7 Merge pull request #570 from rekonder/aj-SCI-1088 
My profile - avatar size fix [SCI-1088]
 2017-05-03 12:27:05 +02:00
Matej Zrimšek
8ad52354eb Used locales instead of hardcoded values for intro.js tutorial popup. 2017-04-25 16:03:50 +02:00
Matej Zrimšek
e8bc9542cc Removed some unneeded intro.js tutorial code. 2017-04-25 16:03:50 +02:00
Matej Zrimšek
a6573bd508 Next button is now always focused when navigating through tutorial steps. [fixes SCI-719] 2017-04-25 16:03:50 +02:00
Matej Zrimšek
a5cffd06f3 Removed all tutorial data from ERB, so that all tutorial code is in JS. [needed for fixing SCI-719] 2017-04-25 16:03:50 +02:00
Mojca Lorber
49574e7a06 remove behavior of not allowing the empty tables in steps 2017-04-25 10:21:16 +02:00
rekonder
b93edac3b9 My profile - avatar size fixes [SCI-1088] 2017-04-25 10:02:00 +02:00
zmagod
66f43803c0 refactor, fix user annotation bug 2017-04-24 16:22:25 +02:00
zmagod
550f563666 working version for steps first run 2017-04-21 16:09:04 +02:00
zmagod
c25df63a14 add tinymce img importer and refactor input sanitize helper 2017-04-19 09:11:52 +02:00
Oleksii Kriuchykhin
181d981a51 Add image preview to protocol repository [SCI-877] 2017-04-12 16:05:38 +02:00
Zmago Devetak
5c9954bb89 Merge pull request #450 from ZmagoD/zd_SCI_939 
Refactor "organizations" to "teams"
 2017-02-01 13:12:02 +01:00
okriuchykhin
9909f9dcff Merge pull request #456 from okriuchykhin/ok_SCI_951 
Fix missing preview images in task and protocol management [SCI-951]
 2017-01-27 14:42:41 +01:00
zmagod
e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
Oleksii Kriuchykhin
0f860496a7 Fix image preview after saving of report [SCI-951] 2017-01-26 14:42:14 +01:00
Mojca Lorber
13d1cc5171 fix entering new smart anotations 2017-01-26 13:50:32 +01:00
zmagod
8c035a1981 renames organization in assets 2017-01-25 12:12:27 +01:00
Oleksii Kriuchykhin
365eef506c Fixes merge conflicts with smart-annotations branch 2017-01-24 15:20:50 +01:00
mlorb
02f314ce60 Merge pull request #443 from mlorb/ml_sci_919_v2 
Remove table of content and customize link target [SCI-919]
 2017-01-24 14:39:47 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
Mojca Lorber
4dc7998fdd Remove table of content and customize link target 2017-01-24 13:10:01 +01:00
Mojca Lorber
eb40513ada remove functionalities from rich text formatting 2017-01-24 09:44:37 +01:00
zmagod
9c3bc8dac7 fixes checklist item user popover bug [fixes SCI-907] 2017-01-23 09:47:04 +01:00
Zmago Devetak
c1e7cc83a7 Merge pull request #434 from ZmagoD/zd_SCI_915 
Text is deleted when entering smart annotation in rich text editor
 2017-01-20 13:01:29 +01:00
Zmago Devetak
7bd368e002 Merge pull request #431 from ZmagoD/zd_add_code_highlight 
Fixes code highlight and smart annotations experiments bug
 2017-01-20 12:59:21 +01:00
zmagod
71453398b1 bugfix 2017-01-20 11:33:49 +01:00
zmagod
4f7d62e79d removes unneeded annotations [fixes SCI-915] 2017-01-20 11:33:10 +01:00
zmagod
9550c6dd35 fixes highlight.js 2017-01-19 17:09:25 +01:00
Matej Zrimšek
54f8b01341 Removed smart annotation filter button disabling, when no results are found for that filter (so that 'no result found' displays instead). [SCI-894] 2017-01-19 15:26:28 +01:00
Oleksii Kriuchykhin
890c5e3c3d Add “no results found” message in smart annotation [SCI-886] 2017-01-19 13:42:58 +01:00
Zmago Devetak
039a8d7da6 Merge pull request #426 from ZmagoD/zd_add_tinyMCE 
Add tiny mce
 2017-01-19 12:57:55 +01:00
mz3944
da604d2619 Merge pull request #427 from mz3944/mz-sci-908 
Some smart annotations refactoring [SCI-908]
 2017-01-19 12:15:20 +01:00
zmagod
f2d5066dc7 fix some bugs 2017-01-19 11:37:59 +01:00
Matej Zrimšek
5d86bbb812 Smart annotations improved documentation. [SCI-908] 2017-01-19 10:56:02 +01:00
Matej Zrimšek
fec83e8c45 Smart annotations refactoring. [SCI-908] 2017-01-19 10:55:43 +01:00
zmagod
2ccafdd670 bug fix 2017-01-19 10:12:01 +01:00
zmagod
27d3868f37 fix bugs 2017-01-19 09:40:39 +01:00
zmagod
88d7cb200e removed quill 2017-01-18 23:06:14 +01:00
zmagod
65fa631b1c adding tinyMce first run 2017-01-18 22:40:08 +01:00
okriuchykhin
18d329fb42 Merge pull request #423 from okriuchykhin/ok_SCI_896 
Make search work for full names in smart annotations [SCI-896]
 2017-01-18 17:58:52 +01:00
Oleksii Kriuchykhin
6555fd02b6 Make search work for full names in smart annotations [SCI-896] 2017-01-18 16:57:51 +01:00
mz3944
b5e38afb64 Merge pull request #416 from mz3944/mz-sci-884 
Smart annotation bug fixes [SCI-884, SCI-889] [WIP]
 2017-01-18 16:13:19 +01:00
Matej Zrimšek
dbbb709bf2 Smart annotations minor refactoring. [SCI-884, SCI-889] 2017-01-18 16:04:39 +01:00
Matej Zrimšek
24458fe590 Smart annotations filter switching fixed/hacked. [SCI-884, SCI-889] 2017-01-18 15:29:48 +01:00
Luka Murn
cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
Matej Zrimšek
d3c33c9dca Refactored smart annotation JS. [SCI-884] 2017-01-17 10:05:41 +01:00
Luka Murn
a2935c6620 Add sample info modal popup to sample smart annotations 
This MR also loads datatables.js globally (as it's required by
the modal), so I removed it everywhere in code, and it shouldn't
be used anymore (e.g. '//= require datatables').

Closes SCI-892.
 2017-01-16 15:52:02 +01:00
Matej Zrimšek
2877126dc6 Fixed selected search filter button style. [SCI-884] 2017-01-16 12:52:03 +01:00
Matej Zrimšek
15d7944302 Preventing splitting of the words in the lookup query for # smart annotations. Query on the # is now performed on every character input, before it sometimes just filtered out the old (results count limited) query. Some refactoring of samrt annotations JS. [SCI-884, SCI-889] 2017-01-13 18:51:05 +01:00
zmagod
1840fdb7e5 cleanup js 2017-01-12 09:52:29 +01:00
zmagod
3a1ec0eb5e refactor [fixes SCI-834] [fixes SCI-837] [fixes SCI-823] [fixes SCI-835] [fixes SCI-836] [fixes SCI-824] 2017-01-11 14:56:47 +01:00
zmagod
a4aa933151 refactor smart annotation parser helper 2017-01-11 10:34:14 +01:00
zmagod
a903772de8 style dropdown 2017-01-10 17:05:32 +01:00
zmagod
fc76a4ae6d Merge branch 'smart-annotations' of https://github.com/biosistemika/scinote-web into zd_SCI_834 2017-01-10 14:22:04 +01:00
zmagod
89e8946a47 expand smart annotation 2017-01-10 14:14:21 +01:00
zmagod
e0e998a0d8 add smart annotation parser helper 2017-01-10 14:14:21 +01:00
zmagod
6efcf49927 working version of dropdown filter 2017-01-10 14:14:21 +01:00
zmagod
53d20df449 added xregexp 2017-01-10 14:14:21 +01:00
zmagod
94262b56ef prepare data for atwho 2017-01-10 14:14:21 +01:00
Oleksii Kriuchykhin
4c9c9037ed Enable image preview after editing protocol and disable preview modal animation [SCI-868] 2017-01-09 17:19:46 +01:00
Luka Murn
0ee5b98977 Refactor code a bit, add dismiss button to header 2017-01-07 09:59:52 +01:00
Oleksii Kriuchykhin
aa2b573278 Enable image preview while editing steps and code style improvements [SCI-694] 2017-01-06 15:58:23 +01:00
Luka Murn
7835753d3c Add atwho-users URL to <body> 2017-01-06 12:48:37 +01:00
Luka Murn
b614ce714b Restyle atwho dropdown 2017-01-05 14:06:48 +01:00
Luka Murn
a78bb79618 Temp commit 2017-01-05 12:07:17 +01:00
Luka Murn
3bee9d2e12 Save an (yet unworking) version of user smart annotations 
Used so other devs can start working on smart annotations.
 2017-01-04 10:54:02 +01:00
Oleksii Kriuchykhin
0d01a4b2bd Remove unneeded function from utils.js [SCI-819] 2016-12-30 15:50:43 +01:00
Oleksii Kriuchykhin
4065be9e4e Fix marking of selected option [SCI-819] 2016-12-30 15:50:43 +01:00
Oleksii Kriuchykhin
e22ff6f8bb Fix an issue with sample editing and type/group dropdowns [SCI-819] 2016-12-30 15:50:43 +01:00
Luka Murn
5beaa26224 Update utils.js 
Closes SCI-811.
 2016-12-22 10:03:00 +01:00
Luka Murn
af6bf2aee1 Fix jQuery selector, make it work for new samples 2016-12-21 16:23:09 +01:00
Luka Murn
e52277bdad Fix sample types & groups when editing sample in samples table 
Closes SCI-811.
 2016-12-21 13:15:55 +01:00
Zmago Devetak
c8631077df Merge pull request #361 from biosistemika/improved-sample-table 
Improved sample table
 2016-12-16 15:37:54 +01:00
Zmago Devetak
daee14bed5 Merge pull request #343 from ZmagoD/zd_SCI_780 
fixed step description links [fixes SCI-780]
 2016-12-15 13:12:25 +01:00
zmagod
50c9dd3f59 fixed typo 2016-12-14 14:40:56 +01:00
zmagod
2426539715 fixes long names in columns dropdown [fixes SCI-784] 2016-12-13 14:54:37 +01:00
zmagod
b56913cc87 refactor 2016-12-12 16:21:38 +01:00
Matej Zrimšek
54de13de82 Upon redirection when clicking the new sample type or group link, you're automatically in adding mode. [Fixes SCI-701] 2016-12-09 17:22:09 +01:00
Matej Zrimšek
0b12c87b09 Restyled new sample type and group dropdown links. Some minor refactoring of related code and docs. [Fixes SCI-701] 2016-12-09 16:44:50 +01:00
zmagod
e23be6cc0e fixed step description links [fixes SCI-780] 2016-12-09 15:26:41 +01:00
Matej Zrimšek
aea679ec11 Added links for creating new sample type and group when creating new sample. [fixes SCI-701] 2016-12-09 11:39:12 +01:00
zmagod
9f1e436623 limits max size of all uploaded files at the one time [fixes SCI-740] 2016-12-07 09:02:04 +01:00
Matej Zrimšek
1db926101d Minor refactoring. 2016-11-23 10:48:43 +01:00
Matej Zrimšek
6bc2603157 Fixed tutorial overlay unexpectedly blurring the screen when not running the tutorial. [fixes SCI-707] 2016-11-23 10:36:09 +01:00