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2268 commits 31 branches 181 tags 166 MiB
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233 commits

Author SHA1 Message Date
zmagod
df13478186 fix samples bug [SCI-1241] 2017-05-09 11:25:00 +02:00
Zmago Devetak
4b816f5322 Merge pull request #568 from ZmagoD/zd_SCI_1119 
Add images to fields with rich text formatting
 2017-05-08 13:06:58 +02:00
zmagod
d6f303581f refactor 2017-05-08 12:56:33 +02:00
Zmago Devetak
e47bf8f013 Merge pull request #582 from ZmagoD/zd_SCI_1051 
fix reports pdf for user annotation [SCI-1051]
 2017-05-08 10:24:40 +02:00
zmagod
b22350136f adds label to step in report [fixes SCI-488] 2017-05-05 09:45:18 +02:00
zmagod
289a148332 refactor 2017-05-03 15:33:23 +02:00
zmagod
5b58824ec0 refactor 2017-05-03 15:30:08 +02:00
zmagod
1b618e88e5 fix reports pdf for user annotation [SCI-1051] 2017-05-03 10:50:43 +02:00
osboxes.org
21a39fc704 Code indentation corrected [fixes SCI-1214] 2017-04-28 10:31:14 +01:00
osboxes.org
f72802f9f2 Tab Teams is highlighted when in Audit trails [fixes SCI-1214] 2017-04-26 16:31:44 +01:00
zmagod
1fefeee3d1 adds team space related methods 2017-04-25 13:44:31 +02:00
zmagod
66f43803c0 refactor, fix user annotation bug 2017-04-24 16:22:25 +02:00
zmagod
55c8c498e2 add image upload functionality to result text 2017-04-24 12:28:27 +02:00
zmagod
550f563666 working version for steps first run 2017-04-21 16:09:04 +02:00
zmagod
c25df63a14 add tinymce img importer and refactor input sanitize helper 2017-04-19 09:11:52 +02:00
okriuchykhin
0fe84c4e24 Merge pull request #550 from okriuchykhin/ok_SCI_1157 
Improve speed of search [SCI-1157]
 2017-04-12 13:11:26 +02:00
Oleksii Kriuchykhin
07d658ab82 Improve speed of search [SCI-1157] 2017-04-11 14:55:44 +02:00
Zmago Devetak
91793c295a Merge pull request #542 from ZmagoD/zd_SCI_825 
Smart annotations and Notifications
 2017-04-10 15:10:17 +02:00
zmagod
90faeec410 fixes typos and protocol step links 2017-04-10 11:21:28 +02:00
zmagod
9bb1bb3f9b refactor [fixes SCI-825] 2017-04-06 15:08:03 +02:00
zmagod
d331911ffe completed step annotations 2017-04-06 08:42:16 +02:00
Mojca Lorber
a0fe47a05d change helper method for user info popover 2017-04-04 15:22:41 +02:00
zmagod
99c116f257 first run 2017-04-04 09:19:43 +02:00
Oleksii Kriuchykhin
2faa137f67 Add user popover method for users [SCI-1127] 2017-04-03 15:10:00 +02:00
zmagod
239a44c26b change send to public_send 2017-03-24 16:25:50 +01:00
zmagod
4635a3320d Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1003_add_extends 2017-03-24 16:09:28 +01:00
zmagod
5cc6cd094e refactor 2017-03-17 16:47:58 +01:00
zmagod
95a0f596b7 adds file link 2017-03-17 16:40:57 +01:00
zmagod
856a4611c6 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1003_add_extends 2017-03-14 15:58:08 +01:00
zmagod
b821fff4a5 adds non breaking space between file name and buttons 2017-03-13 14:14:44 +01:00
zmagod
7b16e5643e fix assets preprocesor for wopi files 2017-03-13 13:20:49 +01:00
zmagod
0c2523beca Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-03-10 16:21:43 +01:00
mlorb
39e1ac4b26 Merge pull request #512 from biosistemika/ml_sci_1074 
Fix permissions for experiment actions [SCI-1074]
 2017-03-10 11:44:27 +01:00
Mojca Lorber
1ba5f1748f fix permissions for experiment actions 2017-03-09 17:45:34 +01:00
zmagod
1d42d46c02 fixes bug with step comments 2017-03-09 16:02:52 +01:00
zmagod
9939d8df06 refactor 2017-03-09 10:51:54 +01:00
zmagod
f78ef8c82a fixes hound 2017-03-08 14:41:42 +01:00
zmagod
5c2e9a4b04 adds extends and fixes report methods 2017-03-08 14:14:03 +01:00
Oleksii Kriuchykhin
0f8336e5a5 Refactoring of the comments using STI [SCI-1090] 2017-03-08 13:18:20 +01:00
Mojca Lorber
f84611f558 fix report - checklist items are in separate row than checkboxes 2017-02-22 15:51:26 +01:00
okriuchykhin
8e18ff44a6 Merge pull request #479 from okriuchykhin/ok_SCI_999 
Add task complete/uncomplete functionality [SCI-999]
 2017-02-20 15:19:00 +01:00
Oleksii Kriuchykhin
218e96b1f0 Code style fixes [SCI-999] 2017-02-16 11:45:07 +01:00
Luka Murn
164bd787e9 Merge pull request #481 from Ducz0r/lm-sci-958-fix 
Team administrators are Viewers of all Projects in Team [SCI-958]
 2017-02-15 10:40:52 +01:00
Nbernot
97584aabb3 Updated the lists of office online file extensions 
Extended the list of file extensions that receive office online icons and 'open in' text.
 2017-02-14 16:44:03 +01:00
Luka Murn
c6ed73bc82 Allow team admins to see all projects, even hidden ones 2017-02-13 13:42:53 +01:00
Oleksii Kriuchykhin
cf8566df33 Add task complete/uncomplete functionality [SCI-999] 2017-02-10 14:27:20 +01:00
Luka Murn
f7bd62547e Refactor teams settings into its own controllers 2017-02-09 14:37:59 +01:00
Luka Murn
7bee3a4ea0 Move user profile to settings 2017-02-09 11:34:52 +01:00
Mojca Lorber
d3e0eca44e redesign individual team page 2017-02-01 14:44:47 +01:00
zmagod
e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
Luka Murn
3bf447b0f4 Fix bug where reCaptcha form wasn't working 2017-01-26 16:06:29 +01:00
Luka Murn
0baaf12de3 Re-display images & checkboxes in PDF reports 
Closes SCI-953.
 2017-01-26 10:46:58 +01:00
Luka Murn
8c5a52417c Merge pull request #445 from okriuchykhin/ok_SCI_940 
Refactor smart annotation/auto_link/simple_format rendering [SCI-940]
 2017-01-25 17:49:38 +01:00
Oleksii Kriuchykhin
c55f3cb99c Add flag to disable simple_format in custom_auto_link [SCI-940] 2017-01-25 17:18:19 +01:00
Oleksii Kriuchykhin
310d8c1920 Refactor smart annotation/auto_link/simple_format rendering [SCI-940] 2017-01-25 17:18:19 +01:00
Oleksii Kriuchykhin
5fe9261595 Fix error when referencing deleted sample in SA [SCI-949] 2017-01-25 15:54:12 +01:00
zmagod
a507bb4d1f hound 2017-01-25 15:40:35 +01:00
zmagod
f04a2f663a renamed organizations in config/ 2017-01-25 12:30:11 +01:00
zmagod
9ae799d52c rename organization/org/Organization to Team in datatables 2017-01-25 09:48:49 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
Zmago Devetak
40bf293ec7 Merge pull request #441 from ZmagoD/zd_SCI_924 
adds smart annotation in task comments, refactor smart_annotation_par…
 2017-01-24 11:18:41 +01:00
okriuchykhin
7fa1f3d966 Merge pull request #438 from okriuchykhin/ok_SCI_921 
Remove unneeded HTML scrubber in protocol importer [SCI-921]
 2017-01-24 11:02:43 +01:00
zmagod
6e7fa21dd3 adds smart annotation in task comments, refactor smart_annotation_parser method, fix the user popover description [fixes SCI-924] 2017-01-24 10:51:12 +01:00
Oleksii Kriuchykhin
2434c73a0c Remove unneeded HTML scrabber in protocol importer [SCI-921] 2017-01-24 09:52:38 +01:00
zmagod
20cde2654b fixed user without permissions bug [fixes SCI-922] 2017-01-23 10:53:42 +01:00
zmagod
9550c6dd35 fixes highlight.js 2017-01-19 17:09:25 +01:00
zmagod
f2d5066dc7 fix some bugs 2017-01-19 11:37:59 +01:00
zmagod
65fa631b1c adding tinyMce first run 2017-01-18 22:40:08 +01:00
Luka Murn
cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
Zmago Devetak
1b9f7db385 Merge pull request #405 from ZmagoD/zd_SCI_832 
Visualization of User smart annotation after saving the field
 2017-01-18 09:36:42 +01:00
okriuchykhin
781a68e0d5 Merge pull request #415 from okriuchykhin/ok_SCI_888 
Add missed space in the string [SCI-888]
 2017-01-18 09:34:51 +01:00
zmagod
cb0483a6e6 refactor 2017-01-18 08:34:29 +01:00
Oleksii Kriuchykhin
ea8f6a8c6b Fix issue in report editor [SCI-102] 2017-01-17 14:21:59 +01:00
Oleksii Kriuchykhin
0ce71884a5 Add missed space in the string [SCI-888] 2017-01-16 17:09:41 +01:00
Luka Murn
a2935c6620 Add sample info modal popup to sample smart annotations 
This MR also loads datatables.js globally (as it's required by
the modal), so I removed it everywhere in code, and it shouldn't
be used anymore (e.g. '//= require datatables').

Closes SCI-892.
 2017-01-16 15:52:02 +01:00
okriuchykhin
02bfd19d1c Merge pull request #385 from okriuchykhin/ok_SCI_102 
Fix XSS on activites and throghout the rest of app [SCI-102]
 2017-01-16 11:41:38 +01:00
zmagod
1b2fa78e42 adds user preview to user smart annotation [fixes SCI-832] 2017-01-13 11:34:10 +01:00
Luka Murn
8b01f912a0 Fix new year problems with activities 
Closes SCI-876.
 2017-01-12 14:47:15 +01:00
Oleksii Kriuchykhin
d05c16b0ba Added auto_link wrapper with custom sanitization [SCI-102] 2017-01-11 17:02:17 +01:00
Oleksii Kriuchykhin
0546716a0b Improve user input sanitization, fix bugs [SCI-102] 2017-01-11 15:50:11 +01:00
zmagod
3a1ec0eb5e refactor [fixes SCI-834] [fixes SCI-837] [fixes SCI-823] [fixes SCI-835] [fixes SCI-836] [fixes SCI-824] 2017-01-11 14:56:47 +01:00
zmagod
a4aa933151 refactor smart annotation parser helper 2017-01-11 10:34:14 +01:00
zmagod
a903772de8 style dropdown 2017-01-10 17:05:32 +01:00
zmagod
e0e998a0d8 add smart annotation parser helper 2017-01-10 14:14:21 +01:00
mz3944
ef431da2db Merge pull request #389 from mz3944/mz-sci-848 
Unable to delete samples [SCI-848]
 2017-01-09 11:57:48 +01:00
Matej Zrimšek
5d104981fd Fixed sample deletion on experiments level. Minor refactoring. [SCI-848] 2017-01-06 14:23:20 +01:00
Mojca Lorber
aad2eadeae syntax fix 2017-01-06 10:46:36 +01:00
Mojca Lorber
4e7e261225 fix protocol preview 2017-01-06 10:10:33 +01:00
Oleksii Kriuchykhin
9987993ce0 Avoid sanitizing of data attributes [SCI-102] 2017-01-05 16:05:48 +01:00
Oleksii Kriuchykhin
1009347026 Add list of whitelisted attributes [SCI-102] 2017-01-05 15:33:41 +01:00
Oleksii Kriuchykhin
0ecb6904d4 Add user input sanitizing in the models [SCI-102] 2017-01-05 13:31:35 +01:00
Oleksii Kriuchykhin
cd3924afd3 Sanitize .html_safe marked strings which contain tags [SCI-102] 2017-01-05 13:04:19 +01:00
Oleksii Kriuchykhin
9c4191a1e0 Initial code commit [SCI-102] 2017-01-05 13:04:19 +01:00
Luka Murn
3bee9d2e12 Save an (yet unworking) version of user smart annotations 
Used so other devs can start working on smart annotations.
 2017-01-04 10:54:02 +01:00
zmagod
a434649f42 Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-01-03 16:35:25 +01:00
Zmago Devetak
c8631077df Merge pull request #361 from biosistemika/improved-sample-table 
Improved sample table
 2016-12-16 15:37:54 +01:00
zmagod
6d2fb3b02c Merge branch 'improved-sample-table' of https://github.com/biosistemika/scinote-web into zd_SCI_790 2016-12-14 17:05:00 +01:00
zmagod
1ff98bb6df adds tooltip to samples dropdown and column names 2016-12-14 13:36:10 +01:00
zmagod
9037ab3f48 fixed navigation link 2016-12-14 10:35:48 +01:00
zmagod
8dd8a7e7cd Merge branch 'improved-sample-table' of https://github.com/biosistemika/scinote-web into zd_improved_samples_table_SCI_774_775_778_777 2016-12-12 15:52:25 +01:00