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457 commits 70 branches 179 tags 165 MiB
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358 commits

Author SHA1 Message Date
Matej Zrimšek 782d384e26 Spinner now doesn't hide prematurally on file uploading. Some recently introduced bugs quickfixes (report images not showing, locale missplealing, client-side blank tables deletion deleted all tables, error if no asset present in a step). 2016-08-25 22:26:53 +02:00
Matej Zrimšek 04d9163ff6 Paperclip file spoofing corrected/modified. 2016-08-25 18:57:06 +02:00
zmagod 99976722a8 uncomment js file 2016-08-25 18:49:49 +02:00
zmagod 1738ca66d2 one-time introductory popup [fixes SCI-336] 2016-08-25 18:44:21 +02:00
Luka Murn 8018cff02e Merge pull request #103 from Ducz0r/bb_edit_delete_comments 
Edit&delete comments
 2016-08-25 17:18:48 +02:00
mlorb b1218cb3d6 Merge pull request #59 from biosistemika/ml_sci_244 
fixes tutorial bug of inappropriate window [SCI-244]
 2016-08-25 17:16:45 +02:00
Luka Murn b533b0aca6 Fix another minor bug 2016-08-25 17:15:53 +02:00
Luka Murn 7cd94e8b0d Fix a minor bug on canvas 2016-08-25 17:09:55 +02:00
Luka Murn 9cd99fc532 Display "no comments" if you delete the last comment 2016-08-25 17:01:30 +02:00
Zmago Devetak 1b21e55fea Merge pull request #100 from ZmagoD/zd_SCI_381 
Adds experiment and team to tag search resuls [fixes SCI-381]
 2016-08-25 15:43:50 +02:00
zmagod 7a47ff6bc5 fixed new task error 2016-08-25 15:30:32 +02:00
zmagod 8ff645fb89 disabled experiment dropdown actions 2016-08-25 15:16:51 +02:00
Zmago Devetak b090fd8d5b Merge pull request #95 from ZmagoD/zd_SCI_374 
adds edit workflow link if no workflow [fixes SCI-374]
 2016-08-25 14:07:33 +02:00
Luka Murn a480c8d403 Styling fixes 2016-08-25 13:59:50 +02:00
Luka Murn 6d86a02d7c Add individual permission checks in dropdowns 
Closes SCI-258.
 2016-08-25 13:51:50 +02:00
Luka Murn 8592c13ed4 Remove now obsolote controller actions 2016-08-25 13:51:31 +02:00
Luka Murn b0d7b9dc75 Generate activities when editing/deleting comments 2016-08-25 13:51:31 +02:00
Luka Murn 24dd25d9f5 Add edit/delete result comment functionality 
Lessons learned during this fix:
Don't use dependant: :destroy on both ends of association
between 2 ActiveRecords, or you will run into stack overflow.
 2016-08-25 13:51:31 +02:00
Luka Murn bac0455435 Add edit&delete functionality to step comments 
This commit also:
* fixes a bug in permission_helper.rb,
* fixes comments.js a bit,
* adds 2 more re-renders of dropdown position calculations to canvas.js and projects/index.js.
 2016-08-25 13:51:31 +02:00
Luka Murn 512efd3812 Fix 2 lines that were too long 2016-08-25 13:51:31 +02:00
Luka Murn c92d016f65 Add edit&delete module/task comments functionality 
This required a minor fix of comments.js.
 2016-08-25 13:51:31 +02:00
Luka Murn f0d9cb96fa Add edit project comments functionality 2016-08-25 13:51:30 +02:00
Luka Murn 15c0baeee8 Add delete project comment functionality 
This commit also removes the old code from @bberic.
 2016-08-25 13:51:30 +02:00
Luka Murn 9e3bb8edb7 Add dependant: :destroy to comments 2016-08-25 13:51:30 +02:00
Luka Murn 8a73a3ab5c Update permission_helper.rb and routes.rb 2016-08-25 13:51:30 +02:00
Luka Murn 319bcc7850 Add permissions for comments to permission_helper.rb 2016-08-25 13:51:30 +02:00
Luka Murn 5569a1e6d2 Revert 2 files that contained no changes 2016-08-25 13:51:30 +02:00
scibb a76d82d188 delete and edit comments for projects, protocols, results, and workflow elements 2016-08-25 13:51:30 +02:00
zmagod 5fabe06b8d implement first time popup logic 2016-08-25 11:44:49 +02:00
Mojca Lorber 4a5d720724 change position of overview and samples 2016-08-25 11:19:53 +02:00
zmagod 1120ef1407 adds experiment and team to tag search resuls [fixes SCI-381] 2016-08-25 10:40:03 +02:00
mlorb c38a4e2614 Merge pull request #94 from mlorb/ml_sci_375 
add move experiment instructions [SCI-375]
 2016-08-25 09:45:16 +02:00
Luka Murn c082bceafc Merge pull request #98 from Ducz0r/lm-sci-385 
Fix bug with linked tasks
 2016-08-25 09:29:50 +02:00
zmagod f515366d91 fixes workflowing after updating description, fixes canvas bug 2016-08-25 09:11:42 +02:00
mlorb 0a066f436f Merge pull request #96 from mlorb/ml_sci_369 
buttons update on experiment overview [SCI-369]
 2016-08-25 08:54:16 +02:00
zmagod 92bb3dda99 hide last next button 2016-08-25 08:46:11 +02:00
zmagod dbdbff12eb add experiment level tutorial step [fixes SCI-338] 2016-08-24 19:03:58 +02:00
Luka Murn 3dddffaa34 Fix bug with linked tasks 
This bug was a legacy of experiment level introduction.
Closes SCI-385, SCI-366.
 2016-08-24 17:22:16 +02:00
mlorb 2d90ad1a65 Merge pull request #88 from mlorb/ml_sci_362 
fixes tile size in edit canvas [SCI-362]
 2016-08-24 17:07:11 +02:00
Mojca Lorber 2a897432e1 update buttons on canvas view 2016-08-24 17:00:27 +02:00
jbargu 5c104ac050 Merge pull request #93 from jbargu/jg_sci_378_move_experiment_error 
Fix 404 move experiment error
 2016-08-24 16:35:29 +02:00
Mojca Lorber d04df349d5 fixes medium and small zoom 2016-08-24 14:18:12 +02:00
Zmago Devetak 0de7ea31ea Merge pull request #90 from ZmagoD/zd_SCI_376 
fixes cloned experiment protocol [fixes SCI-376]
 2016-08-24 14:12:19 +02:00
zmagod 9393a96302 adds edit workflow link if no workflow [fixes SCI-374] 2016-08-24 14:10:50 +02:00
Mojca Lorber 0558d49e26 buttons update on experiment overview 2016-08-24 13:50:25 +02:00
Jure Grabnar 00da7efb44 Merge remote-tracking branch 'origin/jg_SCI_328_moving_workflows' 
Conflicts:
	app/models/experiment.rb

SCI-328 #close
 2016-08-24 13:11:10 +02:00
Zmago Devetak afaeab492d Merge pull request #87 from ZmagoD/zd_SCI_371 
hide the dropdown if user has no permissions(technician) [fixes SCI-371]
 2016-08-24 11:56:29 +02:00
jbargu 180efac87b Merge pull request #92 from jbargu/jg_exp_overview_navbar_sci_353 
Show whole tree structure for experiment in sidebar
 2016-08-24 11:50:39 +02:00
Jure Grabnar dff5abf3d9 Fix module moving position not being updated 2016-08-24 11:42:21 +02:00
Mojca Lorber f554dc6018 add move experiment instructions 2016-08-24 11:36:50 +02:00
Jure Grabnar 3e5e9aed22 Fix 404 on move experiment 
[fixes SCI-378]
 2016-08-24 11:09:03 +02:00
zmagod 27d77bc73f added new permission for dropdown actions 2016-08-24 10:56:30 +02:00
Jure Grabnar e60533af57 Add whole tree structure for experiment 
SCI-353 #close
 2016-08-24 10:47:30 +02:00
Jure Grabnar a091571d9c Add consistent links for archive for all entities 2016-08-24 09:14:29 +02:00
Jure Grabnar 0cdb18ffcd Update experiment links on sidebar between actions 2016-08-24 09:05:57 +02:00
Jure Grabnar a41d851830 Fix secondary navigation for experiment level (overview) 2016-08-24 08:54:02 +02:00
mlorb 5c8d669cac Merge pull request #81 from mlorb/ml_sci_364 
fixes edit experiment [SCI-364]
 2016-08-23 16:49:20 +02:00
Zmago Devetak 396325bd67 Merge pull request #86 from ZmagoD/zd_SCI_365 
changed experiment create redirection [fixes SCI-365]
 2016-08-23 16:30:48 +02:00
Zmago Devetak 9dc7708b73 Merge pull request #85 from ZmagoD/zd_SCI_360 
fixes project overview style and add no description link [fixes SCI-360]
 2016-08-23 16:24:22 +02:00
Zmago Devetak d67997fa8b Merge pull request #83 from ZmagoD/zd_SCI_347 
Fixes search result link for experiment [fixes SCI-347]
 2016-08-23 16:23:41 +02:00
Zmago Devetak aa650bbc65 Merge pull request #82 from ZmagoD/zd_SCI_359 
Add plus button at the bottom of project overview page [fixes SCI-359]
 2016-08-23 16:23:20 +02:00
Zmago Devetak 7e2db66f42 Merge pull request #79 from ZmagoD/zd_SCI_345 
Adds font-awesome to pdf [fixes SCI-345]
 2016-08-23 16:22:30 +02:00
Zmago Devetak 65049692ea Merge pull request #78 from ZmagoD/zd_SCI_349 
updating thumbnail
 2016-08-23 16:22:07 +02:00
zmagod 0429816154 deleted commented code 2016-08-23 16:21:11 +02:00
zmagod 2bbb439745 fixes cloned experiment protocol [fixes SCI-376] 2016-08-23 16:15:45 +02:00
Mojca Lorber 126cf0c210 fixes drag connections area 2016-08-23 16:08:05 +02:00
Mojca Lorber 322be64b5f change experiment path 2016-08-23 14:44:22 +02:00
Mojca Lorber 86ed4c18d8 fixes hound 2016-08-23 13:51:20 +02:00
Mojca Lorber ac68db97b9 fixes tile size in edit canvas 2016-08-23 13:33:10 +02:00
Jure Grabnar 67768c8865 Fix Hound errors 2016-08-23 11:08:10 +02:00
Jure Grabnar 0d56cea3e4 Add placeholders for empty experiments 2016-08-23 10:37:48 +02:00
Jure Grabnar 027193f937 Add links for moving module groups 2016-08-23 10:09:25 +02:00
Jure Grabnar 358f2b1c47 Add moving for newly created modules 2016-08-23 10:00:34 +02:00
zmagod f918746946 hide the dropdown if user has no permissions(technician) [fixes SCI-371] 2016-08-23 09:26:52 +02:00
zmagod 66b8a3055d changed experiment create redirection [fixes SCI-365] 2016-08-23 09:03:39 +02:00
Jure Grabnar c0edf51054 Fix bounding box algorithm, can move new modules 2016-08-23 09:00:25 +02:00
zmagod 03a3759cf5 fixes project overview style and add no description link [fixes SCI-360] 2016-08-23 08:52:53 +02:00
Jure Grabnar 8940ba891b Add initial position for moving workflows 2016-08-22 17:52:55 +02:00
Jure Grabnar 667b7671a6 Add connections for moved workflows 2016-08-22 17:26:21 +02:00
zmagod 9a05935067 fixed search result link for experiment [fixes SCI-347] 2016-08-22 15:35:47 +02:00
Mojca Lorber 75c52d20e5 fixes hound 2016-08-22 15:30:27 +02:00
zmagod 8c592753e4 fixes hound 2016-08-22 15:27:11 +02:00
zmagod bb11999566 adds plus button at the bottom of project overview page [fixes SCI-359] 2016-08-22 15:22:05 +02:00
Mojca Lorber 131d0d269a fixes edit experiment 2016-08-22 15:18:02 +02:00
zmagod eab05eb9db adds font-awesome to pdf [fixes SCI-345] 2016-08-22 14:40:09 +02:00
zmagod d38f29d207 set ajax loading of experiments images [fixes SCI-349] 2016-08-22 11:29:19 +02:00
mlorb ed1cd193ac Merge pull request #77 from mlorb/ml_sci_357 
fixes warning messages when loading a new protocol that is linked with repository [SCI-357]
 2016-08-22 08:56:36 +02:00
mlorb 0832466d20 Merge pull request #76 from mlorb/ml_sci_286 
fixes notifications when creating new sample type or group [SCI-286]
 2016-08-22 08:54:28 +02:00
Mojca Lorber 1c220aba7b delete comment 2016-08-22 08:50:48 +02:00
Jure Grabnar 5bb99adb25 Add frontend logic for moving workflows from canvas 2016-08-19 17:11:17 +02:00
zmagod b86e67a0d6 refactor initProjectExperiment 2016-08-19 16:38:34 +02:00
Mojca Lorber fb081be682 fixes warning messages when loading a new protocol that is linked with repository 2016-08-19 16:03:10 +02:00
zmagod cac5033eba set ajax for workflow img 2016-08-19 15:36:12 +02:00
Zmago Devetak 99aa66cd84 Merge pull request #74 from ZmagoD/zd_SCI_346 
check search input string [fixes SCI-346]
 2016-08-19 14:01:56 +02:00
Mojca Lorber 799cac1238 fixes hound 2016-08-19 13:55:34 +02:00
Jure Grabnar 80498260e5 Add backend for moving task from canvas 2016-08-19 13:53:43 +02:00
Jure Grabnar f575303d11 Update get_new_position for new canvas size 
SCI-358 #close
 2016-08-19 13:42:28 +02:00
Mojca Lorber 51e0d53b12 remove code duplication 2016-08-19 13:08:35 +02:00
Mojca Lorber 571f5b60f3 fixes notifications appearance and disappearance and content adjustment 2016-08-19 10:48:43 +02:00
Mojca Lorber 5c77167388 update buttons 2016-08-18 16:47:16 +02:00