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2768 commits 70 branches 179 tags 165 MiB
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331 commits

Author SHA1 Message Date
Mojca Lorber 34cfe01152 change mentions for user smart annotations in notifications 2017-04-14 16:23:49 +02:00
Mojca Lorber 56efb8086f rename the rest of cloning text 2017-04-13 17:52:32 +02:00
Mojca Lorber 5f02376da3 rename cloning text 2017-04-13 15:09:17 +02:00
zmagod 53e828566a change system notification description 2017-04-13 14:01:52 +02:00
zmagod f104444a0c adds additional explanations [fixes SCI-1103] 2017-04-12 16:56:47 +02:00
Zmago Devetak 9c31239318 Merge pull request #552 from biosistemika/release-1.9.0 
Release 1.9.1
 2017-04-12 13:08:37 +02:00
zmagod d2eb7be426 removed faq label 2017-04-10 11:23:50 +02:00
zmagod 90faeec410 fixes typos and protocol step links 2017-04-10 11:21:28 +02:00
zmagod 9610c5f5a0 fix info dropdown links [fixes SCI-1141] 2017-04-07 11:31:09 +02:00
zmagod 439cd0cd89 add notification to experiments 2017-04-06 14:55:18 +02:00
zmagod 046b608018 add notification for my_module/project comments 2017-04-06 14:07:22 +02:00
zmagod f16607579f refactor steps annotation 2017-04-06 13:03:13 +02:00
zmagod bb437bd8c5 adds notification to results annotation 2017-04-06 09:33:49 +02:00
zmagod d331911ffe completed step annotations 2017-04-06 08:42:16 +02:00
zmagod 99c116f257 first run 2017-04-04 09:19:43 +02:00
zmagod 0096f9dc14 refactor 2017-03-29 09:32:23 +02:00
zmagod 0996c14449 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_765 2017-03-27 10:41:58 +02:00
zmagod 2235fd3fb7 adds view if download expires 2017-03-27 10:38:28 +02:00
zmagod 023b3213e8 fixes email link [fixes SCI-765] 2017-03-24 12:10:07 +01:00
zmagod 4385c68f5f adds zip_export utility first run 2017-03-21 16:15:11 +01:00
Oleksii Kriuchykhin 8a8720fcfe Add missing translation for protocol load [SCI-1125] 2017-03-21 15:07:59 +01:00
Oleksii Kriuchykhin d17eb2b3f7 Add missing translations for samples assign/unassign activities [SCI-1114] 2017-03-17 14:15:50 +01:00
zmagod 0c2523beca Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-03-10 16:21:43 +01:00
Luka Murn 473487faec Add HTML <head><title> to edit, view file pages 
Closes SCI-1049.
 2017-03-06 13:55:07 +01:00
okriuchykhin 75792cde14 Merge pull request #492 from okriuchykhin/ok_SCI_759 
Add more extensive explanation when project name is already taken [SCI-759]
 2017-02-22 16:25:16 +01:00
Oleksii Kriuchykhin 95953e9269 Fix tutorial step 26 wording [SCI-734] 2017-02-22 14:46:38 +01:00
Oleksii Kriuchykhin 35b0b33ddf Add more extensive explanation when project name is already taken [SCI-759] 2017-02-22 14:18:48 +01:00
Mojca Lorber 0fd41e8a6d remove changes on user has no teams view 2017-02-21 15:12:58 +01:00
Mojca Lorber 90864a45a0 fix user has no teams view 2017-02-21 13:08:06 +01:00
okriuchykhin 8e18ff44a6 Merge pull request #479 from okriuchykhin/ok_SCI_999 
Add task complete/uncomplete functionality [SCI-999]
 2017-02-20 15:19:00 +01:00
Luka Murn d097f0dd15 Merge pull request #477 from Ducz0r/lm-sci-928 
Refactor, merge, unify, improve, update, beautify settings page [SCI-928]
 2017-02-13 16:42:57 +01:00
Oleksii Kriuchykhin cf8566df33 Add task complete/uncomplete functionality [SCI-999] 2017-02-10 14:27:20 +01:00
Luka Murn 3eb4faa44b Fix task restore action 
Closes SCI-991.
 2017-02-10 14:08:56 +01:00
Luka Murn f7bd62547e Refactor teams settings into its own controllers 2017-02-09 14:37:59 +01:00
Luka Murn 7bee3a4ea0 Move user profile to settings 2017-02-09 11:34:52 +01:00
Luka Murn 5cb3eb5e09 Refactor preferences -> move them to subcontroller, subroute 2017-02-09 11:07:16 +01:00
Mojca Lorber d3e0eca44e redesign individual team page 2017-02-01 14:44:47 +01:00
Zmago Devetak 5c9954bb89 Merge pull request #450 from ZmagoD/zd_SCI_939 
Refactor "organizations" to "teams"
 2017-02-01 13:12:02 +01:00
Luka Murn ec799520d4 Forgot to add en.yml 2017-01-31 16:05:13 +01:00
zmagod f04a2f663a renamed organizations in config/ 2017-01-25 12:30:11 +01:00
Luka Murn 53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
zmagod 6e7fa21dd3 adds smart annotation in task comments, refactor smart_annotation_parser method, fix the user popover description [fixes SCI-924] 2017-01-24 10:51:12 +01:00
Mojca Lorber 6653f0d4c1 small fixes 2017-01-19 16:42:14 +01:00
Oleksii Kriuchykhin 890c5e3c3d Add “no results found” message in smart annotation [SCI-886] 2017-01-19 13:42:58 +01:00
Mojca Lorber dde9854bf1 update protocol import/export and clone 2017-01-18 14:22:19 +01:00
Mojca Lorber 3b92ab9f36 add names to tables from protocol steps in reports 2017-01-18 14:22:19 +01:00
Mojca Lorber b3c423c582 add table name in protocol step 2017-01-18 14:22:18 +01:00
zmagod 1b2fa78e42 adds user preview to user smart annotation [fixes SCI-832] 2017-01-13 11:34:10 +01:00
zmagod a4aa933151 refactor smart annotation parser helper 2017-01-11 10:34:14 +01:00
zmagod fc76a4ae6d Merge branch 'smart-annotations' of https://github.com/biosistemika/scinote-web into zd_SCI_834 2017-01-10 14:22:04 +01:00
zmagod 94262b56ef prepare data for atwho 2017-01-10 14:14:21 +01:00
Oleksii Kriuchykhin cba064dfcc Improve error message whan importing CSV files with incorrect character encoding [SCI-815] 2017-01-05 17:00:21 +01:00
Luka Murn b614ce714b Restyle atwho dropdown 2017-01-05 14:06:48 +01:00
Luka Murn 09ef3b3ad5 Merge pull request #378 from Ducz0r/lm-sci-802-fix 
Add tooltips to samples column dropdown [SCI-802]
 2017-01-04 11:30:04 +01:00
Luka Murn 2c5b27ce81 Change "Update" to "Save" 
Closes SCI-802.
 2017-01-04 11:29:34 +01:00
mlorb 59751ec41e Merge pull request #373 from mlorb/ml_sci_709 
Add Protocol Preview to Protocol repository [SCI-709]
 2017-01-04 11:28:55 +01:00
Luka Murn 37cd6417c8 Merge pull request #374 from Ducz0r/lm-sci-808-814-fix 
Fix some bugs on sample groups & types page [SCI-808, SCI-814]
 2017-01-04 09:50:26 +01:00
zmagod a434649f42 Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-01-03 16:35:25 +01:00
Oleksii Kriuchykhin d898f8993f Add description to Clone actions [SCI-766] 2016-12-29 15:33:49 +01:00
Luka Murn 2304742d87 Add tooltips to samples column dropdown 
Closes SCI-802.
 2016-12-27 08:45:23 +01:00
Luka Murn 3922be2b17 Change String in sample types & groups 
Closes SCI-808.
 2016-12-23 11:48:57 +01:00
Mojca Lorber 40e3240a99 add content to preview modal 2016-12-22 11:43:11 +01:00
Zmago Devetak c8631077df Merge pull request #361 from biosistemika/improved-sample-table 
Improved sample table
 2016-12-16 15:37:54 +01:00
Mojca Lorber 2cfcba0ceb add protocol preview modal 2016-12-13 10:39:18 +01:00
Zmago Devetak d54007f69c Merge pull request #337 from ZmagoD/zd_SCI_740 
limits max size of all uploaded files at the one time
 2016-12-13 09:04:14 +01:00
zmagod 8dd8a7e7cd Merge branch 'improved-sample-table' of https://github.com/biosistemika/scinote-web into zd_improved_samples_table_SCI_774_775_778_777 2016-12-12 15:52:25 +01:00
zmagod 5176f8b459 clean unneeded code [fixes SCI-778] refactor js 2016-12-12 15:40:13 +01:00
zmagod d9025a9601 changes create/edit mode buttons [fixes SCI-777] 2016-12-12 14:42:06 +01:00
Luka Murn d30a9780f4 Merge branch 'lm-sci-711-fix' of https://github.com/Ducz0r/scinote-web into Ducz0r-lm-sci-711-fix 
Conflicts:
	app/assets/javascripts/samples/sample_datatable.js
 2016-12-12 09:57:37 +01:00
Luka Murn 1a8b141b95 Add delete custom field functionality 2016-12-09 13:49:19 +01:00
Matej Zrimšek aea679ec11 Added links for creating new sample type and group when creating new sample. [fixes SCI-701] 2016-12-09 11:39:12 +01:00
zmagod 9f1e436623 limits max size of all uploaded files at the one time [fixes SCI-740] 2016-12-07 09:02:04 +01:00
okriuchykhin cb2abfa7a9 Merge pull request #325 from okriuchykhin/ok_SCI_712 
Added form for adding new columns to samples table into dropdown [SCI-712]
 2016-12-06 15:00:01 +01:00
zmagod 8ca7151df4 added constant to load_from_file_size_error local 2016-12-06 13:52:07 +01:00
Oleksii Kriuchykhin f6dd64772a Add columns to samples table without page reload [SCI-712] 2016-12-06 13:22:26 +01:00
Oleksii Kriuchykhin 22dabd2177 Added form for adding new columns to samples table into dropdown [SCI-712] 2016-12-06 13:17:05 +01:00
Oleksii Kriuchykhin 94866e8994 Initial code commit for samples columns dropdown [SCI-712] 2016-12-06 13:16:05 +01:00
zmagod ef2471d3f7 fixes inport eln error message and spinner [fixes SCI-752] 2016-12-05 10:44:58 +01:00
zmagod 83aae59eed adds sample groups index page 2016-12-02 09:33:09 +01:00
Matej Zrimšek 46465060d0 Added automatic sign in with token authentication, needed when signing in from different webpage. [closes SCI-689] 2016-11-30 16:56:56 +01:00
Luka Murn f138a39508 Merge pull request #324 from Ducz0r/lm-sci-718-fix 
Fix intro tutorial string
 2016-11-30 09:50:40 +01:00
Luka Murn 76ec77fce4 Merge pull request #329 from biosistemika/simplify-signup 
Merge simplify-signup into master
 2016-11-30 09:41:20 +01:00
zmagod 12848f15fa adds sample_type index view with all crud actions 2016-11-29 17:15:54 +01:00
zmagod 5c0b2d7b24 init sample_types page 2016-11-29 08:57:12 +01:00
Luka Murn 48a1c98f16 Fix intro tutorial string 
Closes SCI-718.
 2016-11-28 17:28:04 +01:00
Zmago Devetak 1e870a6e7c Merge pull request #320 from ZmagoD/zd_SCI_698 
adds new samples columns dropdown [fixes SCI-698]
 2016-11-28 16:30:16 +01:00
zmagod 9d91d2ce28 adds new samples columns dropdown [fixes SCI-698] 2016-11-25 17:29:30 +01:00
Oleksii Kriuchykhin 3fdb20b92c Add full name field to accept invitation form [SCI-738] 2016-11-25 11:15:10 +01:00
Luka Murn b1b095910c Merge pull request #309 from Ducz0r/lm-remove-unused-files 
Brace for impact...
 2016-11-25 10:00:29 +01:00
Luka Murn 198febfd94 Fix user projects not working 2016-11-23 13:19:10 +01:00
Luka Murn 7cbe44d1f2 Refactor user projects & user my modules code 2016-11-22 15:16:26 +01:00
Luka Murn 201b1a48d5 Refactor user my modules code 2016-11-22 15:07:18 +01:00
Luka Murn e0607f7891 Refactor step comments code 2016-11-22 15:01:48 +01:00
Luka Murn 0c96036de8 Refactor some sample types code 2016-11-22 14:59:57 +01:00
Luka Murn 8ff5285179 Refactor some sample groups code 2016-11-22 14:57:01 +01:00
Luka Murn f5e286b1f6 Remove unused code for some more comments 2016-11-22 14:52:43 +01:00
Luka Murn 1f7a8712fb Update task comments & task tags controllers & localized Strings 
(Remove a lot of unused code)
 2016-11-22 14:26:35 +01:00
Matej Zrimšek f13cc5be0e Added additional tutorial step for showing protocol link. Tutorial steps 1-3 are now completelly handled in JS and not in HTML (preferred way). 2016-11-17 18:03:49 +01:00
Luka Murn 9d3685f872 Merge branch 'gamification' into 'master' 
Conflicts:
	app/controllers/users/invitations_controller.rb
	app/controllers/users/settings_controller.rb
 2016-11-17 16:30:18 +01:00
okriuchykhin 39d3b65c52 Merge pull request #297 from okriuchykhin/ok_SCI_685 
Improved tutorial styling [SCI-685]
 2016-11-17 10:57:10 +01:00
Oleksii Kriuchykhin d2e29935cf Improved tutorial styling [SCI-685] 2016-11-16 15:44:06 +01:00
Oleksii Kriuchykhin fc09cafe63 Fix tutorial strings [SCI-677] 2016-11-16 13:15:02 +01:00
Luka Murn 04749c3b2c Allow inviting of existing, unconfirmed users 
Closes SCI-676.
 2016-11-15 15:04:31 +01:00
okriuchykhin 01b01939f3 Merge pull request #277 from okriuchykhin/ok_SCI_571 
Additional steps added to tutorial and numbering of the steps fixed [SCI-571]
 2016-11-15 12:05:20 +01:00
Mojca Lorber 615cd3c278 profile changes for gamification 2016-11-14 15:04:18 +01:00
Oleksii Kriuchykhin b9f982ead7 Additional steps added to tutorial and numbering of the steps fixed [SCI-571] 2016-11-11 10:07:34 +01:00
Oleksii Kriuchykhin d2491a18a4 Tutorial Save Protocol step added [SCI-571] 2016-11-11 10:06:18 +01:00
Oleksii Kriuchykhin 6811120829 Added step numbers in intro tutorial [SCI-570] 2016-11-09 10:52:00 +01:00
mlorb 0793fb9f11 Merge pull request #260 from mlorb/ml_sci_614 
Add notification for removing user from team and removing user from project [SCI-614]
 2016-11-08 11:30:49 +01:00
okriuchykhin fd805f4072 Merge pull request #259 from okriuchykhin/ok_SCI_605 
Added additional activities [SCI-605]
 2016-11-07 10:01:16 +01:00
Luka Murn 0ab62576a2 Add new modal to organization page, remove old modal code 2016-11-07 09:43:10 +01:00
Luka Murn 6fe0d6b3df A working invite modal! 2016-11-07 09:43:10 +01:00
Luka Murn ccf8932611 Add first version of invite users modal 2016-11-07 09:43:09 +01:00
Mojca Lorber 44b51d087a merging 2016-11-02 14:06:20 +01:00
Mojca Lorber a2213e23b3 add notification for removing user from team and removing user from project 2016-11-02 11:52:41 +01:00
Oleksii Kriuchykhin e8d20dfc01 Added additional activities [SCI-605] 2016-11-02 10:43:36 +01:00
Oleksii Kriuchykhin d28edfb488 Added statistics block in users profile [SCI-566] 2016-10-27 13:44:27 +02:00
Mojca Lorber 878952f072 change edit avatar in profile 2016-10-26 13:41:17 +02:00
Luka Murn 4b388493b0 Fix a String 
Closes SCI-611
 2016-10-25 09:36:22 +02:00
zmagod 578ce86fed removes projects dropdown description from tutorial step [fixes SCI-589] 2016-10-20 13:29:16 +02:00
zmagod 1614cbc2b2 fixes repeat tutorial button and localization typos 2016-10-17 15:16:22 +02:00
zmagod d7f514db09 fixes search 2016-10-17 15:10:26 +02:00
zmagod efe031d766 setup current_organization in all controllers 2016-10-17 15:10:26 +02:00
Matej Zrimšek 21ec05d541 Refactored searches (user and globals earch) and used constants. 2016-10-17 11:17:59 +02:00
Luka Murn bdaeb4db13 Add notification mailer preview 2016-10-13 08:56:04 +02:00
mlorb 78f7879c04 Merge pull request #216 from mlorb/ml_sci_555 
Adding update notifications in settings [SCI-555]
 2016-10-13 08:53:55 +02:00
Mojca Lorber 42f6b679f8 Adding system notifications email function in settings 2016-10-12 11:50:26 +02:00
Luka Murn cccabcdd7b Remove invitation_to_organization email 
This email is no longer needed, because if user enables
assignment notifications, he/she will already receive an
email whenever he/she is added to a new organization/team (via
notifications email).
 2016-10-12 10:54:36 +02:00
Zmago Devetak f25767fdc3 Merge pull request #209 from ZmagoD/zd_SCI_534_remove_popup 
Removed introductory popup [fixes SCI-534]
 2016-10-12 08:13:46 +02:00
Oleksii Kriuchykhin 90c853743c Additional fixes to email markup and logic [SCI-443] 2016-10-11 16:43:17 +02:00
Oleksii Kriuchykhin 5399033fce Added user settings for email notifications [SCI-443] 2016-10-11 16:43:17 +02:00
Oleksii Kriuchykhin 8dc956010c Initial code commit [SCI-443] 2016-10-11 16:43:17 +02:00
zmagod 42a30576e3 removed introductory popup [fixes SCI-534] 2016-10-11 08:33:50 +02:00
Jure Grabnar 1f67aec258 Prevent destroying protocols when file is edited 
SCI-552 #close
 2016-10-06 16:13:42 +02:00
zmagod de00a19dd9 fixes styling in settings preferences [SCI-553] 2016-10-06 13:22:44 +02:00
Luka Murn 5c80c8a817 Add "no notifications" to dropdown & notifications index page 2016-10-05 16:58:21 +02:00
Oleksii Kriuchykhin 8907e54b49 Global notifications index page added [SCI-442] 2016-10-05 15:51:11 +02:00
Oleksii Kriuchykhin 8b5b0723d1 Initial code commit 2016-10-05 15:51:11 +02:00
zmagod a68e7abc57 first run notification settings 2016-10-04 15:52:48 +02:00
Jure Grabnar 0c7cd52dba Add WOPI icons/buttons to files 2016-10-04 12:34:43 +02:00
Luka Murn 61cb9651c7 Merge pull request #188 from biosistemika/global-notifications 
Global notifications
 2016-10-04 08:30:50 +02:00
Jure Grabnar 03567d6208 Prevent archive of locked result asset 2016-10-03 17:07:57 +02:00
mlorb 153b692c0c Merge pull request #181 from mlorb/ml_sci_321 
Displaying more information for individual samples in Sample table [SCI-321]
 2016-10-03 16:37:35 +02:00
Mojca Lorber 3b0185a45b change title of modal 2016-10-03 16:33:58 +02:00
Jure Grabnar f727289935 Add lock check for editing result 2016-10-03 13:43:35 +02:00
zmagod ea17182372 generate notifications [fixes SCI-440] 2016-10-03 11:37:29 +02:00
Mojca Lorber 5b32be2137 adding subtitle in modal 2016-10-03 09:28:58 +02:00
Jure Grabnar d9fa882d6a Add check for locked files on step delete 2016-10-01 14:51:55 +02:00
Luka Murn 49c5474219 Merge pull request #178 from mz3944/mz_help_button_SCI_13_v2 
Fixed wrong CSS formatting and added release notes link to help link.
 2016-09-30 08:27:57 +02:00
Jure Grabnar ff47f29dc2 Add wopi file activity 
SCI-393 #close
 2016-09-29 16:16:42 +02:00