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195 commits

Author SHA1 Message Date
zmagod e3ca782996 add info modal for repository items [fixes SCI-2066] 2018-02-27 16:21:46 +01:00
Matej Zrimšek b8b9707c06 Fixed protocol and archive permission calls, fixed result permissions; module group managing is now also allowed on newly created groups; other permission call fixes and some refactoring. 2018-02-19 14:51:14 +01:00
Matej Zrimšek 5bda53eebf Overall refactoring of all canaid permissions and code related to their calls. 2018-02-16 10:54:06 +01:00
mlorb e76ec7f4a4
Merge pull request #911 from mlorb/ml-sci-1797 
Permissions - refactor organization & team level permissions (core) [SCI-1797]
 2018-01-05 16:03:55 +01:00
mlorb 99185871c4 fix naming things 2018-01-05 15:15:50 +01:00
Oleksii Kriuchykhin 070711917e Code fixes [SCI-1873] 2018-01-04 11:25:34 +01:00
Oleksii Kriuchykhin 512ee07bde Fix repositories [SCI-1873] 2017-12-19 17:53:45 +01:00
mlorb 0d37f9c85a refactor clone protocol permission 2017-12-14 14:18:16 +01:00
mlorb f6d36ae6a2 refactor update protocol type in repository 2017-12-14 14:18:16 +01:00
mlorb 806fcbce36 refactor update protocol in repository permission 2017-12-14 14:18:16 +01:00
mlorb e0d1ae174e refactor read protocol in repository permission 2017-12-14 14:18:15 +01:00
zmagod 1f45123d51 removes unneeded comments 2017-08-21 13:34:39 +02:00
Luka Murn ae5bccf709 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile.lock
	app/datatables/repository_datatable.rb
	app/models/repository_cell.rb
 2017-08-07 08:45:53 +02:00
okriuchykhin af4b310754 Add ordering for column mappings in repositories 2017-07-26 13:35:54 +02:00
zmagod 506e47a595 fixes sorting of assigned column [fixes SCI-1483] 2017-07-14 09:45:36 +02:00
Mojca Lorber ec76873e95 fix sorting by assigned causes ajax error 2017-07-13 11:41:19 +02:00
Oleksii Kriuchykhin b234c07c13 Fix datatables [SCI-1409] 2017-07-03 15:33:50 +02:00
Oleksii Kriuchykhin 115ce91d8d Handle column mappings in task repository [SCI-1381] 2017-06-20 15:58:52 +02:00
Oleksii Kriuchykhin 9a9f8b9c41 Fix total number of records in task repository [SCI-1381] 2017-06-19 16:45:57 +02:00
mlorb 14429a270c Merge pull request #689 from mlorb/ml_sci_1354 
Truncate and display text in tooltip in custom repository fields [SCI-1354]
 2017-06-19 15:50:38 +02:00
Mojca Lorber 39dd6daabb small fixes 2017-06-19 15:30:38 +02:00
Matej Zrimšek 6b284d8c89 Filtering and sorting of records didn't work when sorting on custom columns in repository datatable. [SCI-1357] 2017-06-16 16:02:31 +02:00
Matej Zrimšek 1f0eeeaecb Optimized repository cells search by replacing Rails select statement with raw SQL statement. [SCI-1357] 2017-06-16 14:31:31 +02:00
okriuchykhin 05ea00a5d3 Merge pull request #690 from okriuchykhin/ok_SCI_1346_v2 
Fix bug when reordering column to the first position in repositories [SCI-1346]
 2017-06-16 14:29:08 +02:00
Oleksii Kriuchykhin 94d74b8101 Make assigned column always visible in repositories [SCI-1346] 2017-06-16 11:47:41 +02:00
Mojca Lorber a195c9a5af truncate and display text in tooltip in custom repository fields 2017-06-15 15:08:33 +02:00
Luka Murn 3df034ff21 Merge pull request #687 from mz3944/mz-SCI-1357 
Repository management - filter on custom columns [SCI-1357]
 2017-06-15 13:30:42 +02:00
Matej Zrimšek bae1e298d7 Fixed repositories search to only search the current repository. [SCI-1357] 2017-06-14 19:49:08 +02:00
Matej Zrimšek 092e82c722 Date search fix for repositories. [SCI-1357] 2017-06-14 19:36:15 +02:00
Matej Zrimšek e38947b1f8 Minor repository search refactoring. [SCI-1357] 2017-06-14 19:28:53 +02:00
Matej Zrimšek be4a8d494a Search functionality added to custom columns of custom repositories. [SCI-1357] 2017-06-14 19:28:12 +02:00
Oleksii Kriuchykhin 13fdbf8850 Fix sorting in repositories when only assigned selected [SCI-1349] 2017-06-14 14:29:59 +02:00
Oleksii Kriuchykhin 4b0d7acabe Fix search when viewing only assigned repository records [SCI-1342] 2017-06-13 09:11:27 +02:00
Luka Murn 28f78a0c6c Merge pull request #670 from Ducz0r/lm-sci-1340 
Fix assigned repository rows in task display [SCI-1340]
 2017-06-13 08:55:55 +02:00
Luka Murn e26337d5ee Merge pull request #671 from biosistemika/custom-repositories 
Merge custom-repositories into master
 2017-06-09 18:46:47 +02:00
Luka Murn 90ca6d9a76 Fix assigned repository rows in task display 
Closes SCI-1340.
 2017-06-09 13:50:13 +02:00
Matej Zrimšek 77a225ec31 Added toggle between assigned and all repository records. [SCI-1276] 2017-06-07 18:13:25 +02:00
Oleksii Kriuchykhin ad8dd6d740 PR fixes [SCI-1274] 2017-06-07 15:23:25 +02:00
Oleksii Kriuchykhin 8b1190060e Add custom repository table [SCI-1274] 2017-06-07 15:23:25 +02:00
ajugo 887d9a4f52 Samples - show all/show assigned [SCI-1277] (#644) 
* Samples - show all/show assigned [SCI-1277]

* Some fixes in code

* Some minor fixes in code

* Omit present

* Correct missed present

* Fixing hound warnings
 2017-06-06 12:46:56 +02:00
Zmago Devetak 4b816f5322 Merge pull request #568 from ZmagoD/zd_SCI_1119 
Add images to fields with rich text formatting
 2017-05-08 13:06:58 +02:00
Oleksii Kriuchykhin 9055894d07 Add additional sanitization to search parameters in datatables [SCI-763] 2017-04-25 17:37:42 +02:00
zmagod c25df63a14 add tinymce img importer and refactor input sanitize helper 2017-04-19 09:11:52 +02:00
okriuchykhin c2a69982aa Merge pull request #471 from okriuchykhin/ok_SCI_936 
Adds datatable to all teams page [SCI-936]
 2017-02-07 10:33:33 +01:00
Oleksii Kriuchykhin db90c5d63b Add datatable to all teams page [SCI-936] 2017-02-02 09:53:59 +01:00
Mojca Lorber d3e0eca44e redesign individual team page 2017-02-01 14:44:47 +01:00
Zmago Devetak 5c9954bb89 Merge pull request #450 from ZmagoD/zd_SCI_939 
Refactor "organizations" to "teams"
 2017-02-01 13:12:02 +01:00
zmagod be5faad97c fixes hound 2017-01-31 13:33:55 +01:00
zmagod e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
zmagod 61b260fb8a fixes bug in protocol management 2017-01-27 11:01:44 +01:00
Oleksii Kriuchykhin 17a53cbd7f Fix protocol table filtering by keywords [SCI-957] 2017-01-26 15:52:46 +01:00
Oleksii Kriuchykhin c55f3cb99c Add flag to disable simple_format in custom_auto_link [SCI-940] 2017-01-25 17:18:19 +01:00
Oleksii Kriuchykhin 310d8c1920 Refactor smart annotation/auto_link/simple_format rendering [SCI-940] 2017-01-25 17:18:19 +01:00
zmagod a507bb4d1f hound 2017-01-25 15:40:35 +01:00
zmagod 9ae799d52c rename organization/org/Organization to Team in datatables 2017-01-25 09:48:49 +01:00
Luka Murn 53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
Matej Zrimšek 5d65627808 Fixed sample editing in samples table. [SCI-914] 2017-01-20 11:10:17 +01:00
Zmago Devetak 1b9f7db385 Merge pull request #405 from ZmagoD/zd_SCI_832 
Visualization of User smart annotation after saving the field
 2017-01-18 09:36:42 +01:00
Luka Murn ffc2b56dff Fix String quotes 2017-01-17 08:28:41 +01:00
Luka Murn 2f48409fdd Merge pull request #409 from Ducz0r/lm-sci-813-fix-v2 
Fix filter not working correctly with hidden custom columns [SCI-813]
 2017-01-17 08:17:52 +01:00
Luka Murn 16955dcee6 Fix Hound errors. 2017-01-16 15:58:37 +01:00
Luka Murn a2935c6620 Add sample info modal popup to sample smart annotations 
This MR also loads datatables.js globally (as it's required by
the modal), so I removed it everywhere in code, and it shouldn't
be used anymore (e.g. '//= require datatables').

Closes SCI-892.
 2017-01-16 15:52:02 +01:00
okriuchykhin 02bfd19d1c Merge pull request #385 from okriuchykhin/ok_SCI_102 
Fix XSS on activites and throghout the rest of app [SCI-102]
 2017-01-16 11:41:38 +01:00
Luka Murn ba567284ed Fix filter not working correctly with hidden custom columns 
Closes SCI-813.
 2017-01-13 17:03:19 +01:00
zmagod 1b2fa78e42 adds user preview to user smart annotation [fixes SCI-832] 2017-01-13 11:34:10 +01:00
Oleksii Kriuchykhin d05c16b0ba Added auto_link wrapper with custom sanitization [SCI-102] 2017-01-11 17:02:17 +01:00
Oleksii Kriuchykhin 0546716a0b Improve user input sanitization, fix bugs [SCI-102] 2017-01-11 15:50:11 +01:00
okriuchykhin 404952336d Merge pull request #400 from okriuchykhin/ok_SCI_846 
Fixes sorting of custom columns in samples datatable [SCI-846]
 2017-01-11 15:34:02 +01:00
Oleksii Kriuchykhin 094d0f0f71 Fixes sorting of custom columns in samples datatable [SCI-846] 2017-01-11 13:21:38 +01:00
zmagod 89e8946a47 expand smart annotation 2017-01-10 14:14:21 +01:00
Luka Murn 0cf5afa499 Merge pull request #376 from Ducz0r/lm-sci-813-fix 
Fix search on hidden columns in samples table [SCI-813]
 2017-01-10 11:27:56 +01:00
Oleksii Kriuchykhin 835e982292 SAnitize AJAX calls in controllers and datatables [SCI-102] 2017-01-05 13:12:22 +01:00
mlorb 59751ec41e Merge pull request #373 from mlorb/ml_sci_709 
Add Protocol Preview to Protocol repository [SCI-709]
 2017-01-04 11:28:55 +01:00
Mojca Lorber c476faca30 fix hound 2017-01-03 11:04:09 +01:00
Mojca Lorber e555535dfb add edit button to protocol preview modal 2017-01-03 10:04:14 +01:00
Luka Murn fbc2be890c Fix search on hidden columns in samples table 
Closes SCI-813.
 2016-12-23 19:56:54 +01:00
zmagod 01849a46db removed unneeded lines 2016-12-21 15:40:07 +01:00
zmagod a5a8bbf27a fixed assigned column bug 2016-12-21 15:35:05 +01:00
zmagod e2723a288c fixes bug with samples sorting [fixes SCI-812] 2016-12-21 14:32:28 +01:00
Zmago Devetak c8631077df Merge pull request #361 from biosistemika/improved-sample-table 
Improved sample table
 2016-12-16 15:37:54 +01:00
Mojca Lorber 2cfcba0ceb add protocol preview modal 2016-12-13 10:39:18 +01:00
Mojca Lorber 7d88e247fc refactoring 2016-12-08 14:41:35 +01:00
Mojca Lorber 195055f9cf change SAMPLES_TABLE_DEFAULT_STATE 2016-12-07 14:51:34 +01:00
zmagod fafecce264 adds autolink to comments, tast desc., step desc., experiment desc., samples table 'only custom fields', checklists [fixes SCI-643] 2016-11-23 14:18:50 +01:00
Luka Murn 3dddffaa34 Fix bug with linked tasks 
This bug was a legacy of experiment level introduction.
Closes SCI-385, SCI-366.
 2016-08-24 17:22:16 +02:00
Zmago Devetak 13697e8688 Merge pull request #58 from ZmagoD/zd_SCI_74 
Filter search query for special chars [fixes SCI_74]
 2016-08-17 10:00:47 +02:00
zmagod c9ff249067 fixed hound alert 2016-08-12 11:11:52 +02:00
zmagod 6c7cfb4467 filter search query for special chars [fixes SCI_74] 2016-08-12 11:08:51 +02:00
zmagod 7653f2b9ec fixed hound 2016-08-10 11:26:27 +02:00
zmagod deb739efa6 fixes loading samples error in blank project 2016-08-10 09:13:12 +02:00
zmagod fd8187370e Feed the Hound part 3 2016-08-03 13:16:51 +02:00
zmagod 9d4a67a5b6 Feed the Hound 2 2016-08-03 13:11:46 +02:00
zmagod 57ac34e9f4 add samples to experiment page [fixes SCI-43] 2016-08-03 12:57:51 +02:00
Luka Murn 076b67620f Migration GitLab -> GitHub 2016-07-21 13:11:15 +02:00
Luka Murn 055298fee8 Initial commit. 2016-02-12 16:52:43 +01:00