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3499 commits 43 branches 185 tags 169 MiB
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214 commits

Author SHA1 Message Date
Luka Murn
16e672b9d8 Add VERSION file where the sciNote Core version is stored 2017-07-10 09:26:35 +02:00
Luka Murn
bc8d945101 Damn, I spent too much time on GeneIO. Fixing again >_< 2017-07-07 13:19:39 +02:00
Luka Murn
e9ef7b61ef Fix WickedPdf bug on production 2017-07-07 13:05:18 +02:00
mz3944
f55861b373 Merge pull request #731 from mz3944/mz-SCI-1413 
Fixed some RoR 5.1 default settings. [SCI-1413]
 2017-07-06 17:17:27 +02:00
Luka Murn
9f60ece25f Merge branch 'master' into rails-5.1 
Conflicts:
	app/models/repository.rb
	app/models/repository_row.rb
	app/views/projects/index.html.erb
	app/views/shared/_secondary_navigation.html.erb
 2017-07-06 15:12:15 +02:00
Matej Zrimšek
843116f645 Fixed some RoR 5.1 default settings. [SCI-1413] 2017-07-04 14:42:53 +02:00
Luka Murn
9a19cb711f Version bump to 1.12.1 2017-07-04 08:00:32 +02:00
zmagod
fd13921720 fixes repeat tutorial [fixes SCI-1410] 2017-06-29 11:00:50 +02:00
zmagod
525c9770ac fixes experiment page [fixes SCI-1395] 2017-06-28 15:21:32 +02:00
zmagod
819f47b450 setup sciNote for Rails 5.1 2017-06-23 15:19:08 +02:00
Zmago Devetak
d726c121bc Version bump to 1.12.0 2017-06-23 12:37:19 +02:00
Mojca Lorber
b6f146f177 fix cog position on repositories page 2017-06-16 11:54:31 +02:00
Luka Murn
e0828657b3 Somebody kill the Hound please 2017-06-08 11:23:24 +02:00
Luka Murn
9bfbf3b634 Minor fix #2 2017-06-08 11:22:27 +02:00
Luka Murn
b729c06f31 Minor fix 2017-06-08 11:20:11 +02:00
Luka Murn
0aee11d6d8 Hound is love, Hound is life #2 2017-06-07 18:26:32 +02:00
Luka Murn
42f7b4f68d Hound is love, Hound is life 2017-06-07 18:22:15 +02:00
Luka Murn
02dd6636ba Allow saving & editing of reports with repository elements 
Closes SCI-1279.
 2017-06-07 16:55:00 +02:00
Luka Murn
b5f6d1da94 Allow custom repositories to be added to reports 2017-06-07 16:54:32 +02:00
Oleksii Kriuchykhin
8b1190060e Add custom repository table [SCI-1274] 2017-06-07 15:23:25 +02:00
Mojca Lorber
51c4eeb106 renaming 2017-06-06 15:50:43 +02:00
Mojca Lorber
13bf4ad229 create new repository 2017-06-06 09:54:39 +02:00
Luka Murn
fcc3995049 Merge pull request #647 from biosistemika/master 
Bring latest master changes into custom-repositories
 2017-05-30 14:18:14 +02:00
mz3944
6b8c8deb16 Merge pull request #634 from mz3944/mz-SCI-414 
Uncompleted steps not added to Reports
 2017-05-23 09:58:05 +02:00
Mojca Lorber
9ae615264d add global repositories screen - tab control 2017-05-22 17:54:30 +02:00
Luka Murn
4c5d7267ac Version bump to 1.11.0 2017-05-18 13:48:02 +02:00
Matej Zrimšek
f78c80b148 Added possibility to add uncompleted steps to report. [closes SCI-414] 2017-05-17 13:25:21 +02:00
Oleksii Kriuchykhin
72a651c7de Add migrations and models for custom repositories [SCI-1267] 2017-05-16 15:27:36 +02:00
Oleksii Kriuchykhin
5d55720aad Fix steps ordering in reports [SCI-1008] 2017-05-11 15:56:33 +02:00
zmagod
80a0af8c9f replace all ActionController::Base.helpers.sanitize calls with custom sanitize_input method [fixes SCI-1241] 2017-05-11 11:36:47 +02:00
Oleksii Kriuchykhin
0ee7e11620 Add advanced search options [SCI-1158] 2017-05-05 16:41:23 +02:00
Matej Zrimšek
2c76ba9471 Added date format constant. [Fixes SCI-1205] 2017-04-25 16:37:09 +02:00
Luka Murn
61af70668c Bump version to 1.10.0 2017-04-19 09:31:40 +02:00
Zmago Devetak
9c31239318 Merge pull request #552 from biosistemika/release-1.9.0 
Release 1.9.1
 2017-04-12 13:08:37 +02:00
Luka Murn
d8c00401cd Update constants.rb 
Bump version to 1.9.1
 2017-04-11 09:10:55 +02:00
Luka Murn
a30c7a77e8 Silence Wicked PDF generation 
Closes SCI-1107.
 2017-04-10 14:00:31 +02:00
zmagod
9610c5f5a0 fix info dropdown links [fixes SCI-1141] 2017-04-07 11:31:09 +02:00
okriuchykhin
b781ebd6fe Merge pull request #536 from okriuchykhin/ok_SCI_1166 
Whitelist application/zip file type in paperclip for some .xlsx files [SCI-1166]
 2017-04-05 09:55:39 +02:00
Oleksii Kriuchykhin
ba4dbe49f8 Whitelist application/zip file type in paperclip for some .xlsx files [SCI-1166] 2017-04-04 10:51:54 +02:00
zmagod
e016bda9d2 adds expired days in constant 2017-04-04 10:16:54 +02:00
mlorb
317739af1e Merge pull request #530 from biosistemika/ml_sci_1044 
Add data-hook and yadcf-filter plug-in [SCI-1044]
 2017-03-31 14:00:23 +02:00
Mojca Lorber
6a4faf8765 add color constants 2017-03-31 13:24:08 +02:00
zmagod
0996c14449 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_765 2017-03-27 10:41:58 +02:00
zmagod
4635a3320d Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1003_add_extends 2017-03-24 16:09:28 +01:00
zmagod
94732c6d18 adds delayed zip generator 2017-03-23 15:45:02 +01:00
Luka Murn
541998bde6 Bump version to 1.9.0 2017-03-23 14:37:47 +01:00
zmagod
856a4611c6 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1003_add_extends 2017-03-14 15:58:08 +01:00
zmagod
0c2523beca Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-03-10 16:21:43 +01:00
zmagod
1d42d46c02 fixes bug with step comments 2017-03-09 16:02:52 +01:00
zmagod
3057965940 fix bug with filenames 2017-03-09 11:48:50 +01:00
zmagod
9939d8df06 refactor 2017-03-09 10:51:54 +01:00
zmagod
49f91184da fixes locals 2017-03-09 09:55:15 +01:00
zmagod
5c2e9a4b04 adds extends and fixes report methods 2017-03-08 14:14:03 +01:00
Luka Murn
0916e7e40d Allow upload of .dot, .pot, .rtf files 
Closes SCI-1052.
 2017-03-06 15:01:32 +01:00
zmagod
e1b3dcc2ba adds enum extends to report element part of SCI-1003 2017-02-27 13:53:46 +01:00
Luka Murn
fecfc9e41d Merge pull request #498 from biosistemika/release-1.8.1 
Release 1.8.1
 2017-02-23 14:57:30 +01:00
Luka Murn
98e2a56670 Bump version to 1.8.1 2017-02-23 14:00:46 +01:00
Luka Murn
cb12bfddc0 Merge pull request #497 from biosistemika/release-1.8.0 
Version bump to 1.8.0
 2017-02-23 11:36:24 +01:00
Luka Murn
52ab6d096f Version bump to 1.8.0 2017-02-23 11:15:26 +01:00
okriuchykhin
8e18ff44a6 Merge pull request #479 from okriuchykhin/ok_SCI_999 
Add task complete/uncomplete functionality [SCI-999]
 2017-02-20 15:19:00 +01:00
Oleksii Kriuchykhin
f97c20e9b5 Fix hound warnings [SCI-999] 2017-02-13 15:42:28 +01:00
Oleksii Kriuchykhin
cf8566df33 Add task complete/uncomplete functionality [SCI-999] 2017-02-10 14:27:20 +01:00
Luka Murn
f7bd62547e Refactor teams settings into its own controllers 2017-02-09 14:37:59 +01:00
Luka Murn
5cb3eb5e09 Refactor preferences -> move them to subcontroller, subroute 2017-02-09 11:07:16 +01:00
Oleksii Kriuchykhin
62535a01bd Move teams datatable js code into separate file [SCI-936] 2017-02-03 10:44:42 +01:00
Zmago Devetak
5c9954bb89 Merge pull request #450 from ZmagoD/zd_SCI_939 
Refactor "organizations" to "teams"
 2017-02-01 13:12:02 +01:00
Luka Murn
50b8588cbf Version bump to 1.7.2 2017-01-31 15:49:58 +01:00
Luka Murn
db75231617 Update URLs to sciNote support pages 
Closes SCI-978.
 2017-01-31 15:48:56 +01:00
zmagod
e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
Luka Murn
b2d2f56bdd Version bump to 1.7.1 2017-01-26 17:00:54 +01:00
Luka Murn
042a85af45 Bump version to 1.7.0 2017-01-25 18:22:11 +01:00
Mojca Lorber
d669f006b1 fix tables in reports 2017-01-25 15:15:26 +01:00
zmagod
1220466035 fixing hound 2017-01-25 15:00:14 +01:00
zmagod
f04a2f663a renamed organizations in config/ 2017-01-25 12:30:11 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
zmagod
9550c6dd35 fixes highlight.js 2017-01-19 17:09:25 +01:00
Luka Murn
cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
okriuchykhin
02bfd19d1c Merge pull request #385 from okriuchykhin/ok_SCI_102 
Fix XSS on activites and throghout the rest of app [SCI-102]
 2017-01-16 11:41:38 +01:00
Oleksii Kriuchykhin
0546716a0b Improve user input sanitization, fix bugs [SCI-102] 2017-01-11 15:50:11 +01:00
Oleksii Kriuchykhin
aa2b573278 Enable image preview while editing steps and code style improvements [SCI-694] 2017-01-06 15:58:23 +01:00
Oleksii Kriuchykhin
4fe3030ad4 Freeze WHITELISTED_ATTRIBUTES constatnt [SCI-102] 2017-01-05 16:13:00 +01:00
Oleksii Kriuchykhin
1009347026 Add list of whitelisted attributes [SCI-102] 2017-01-05 15:33:41 +01:00
Luka Murn
ef688feb4e Hotfix 1.6.1 
Set confirmed_at to created_at when using no
email confirmations and users sign up by themselves.
 2017-01-05 15:27:18 +01:00
Oleksii Kriuchykhin
6487bd788a Add additional whitelisted tags [SCI-102] 2017-01-05 14:40:38 +01:00
Oleksii Kriuchykhin
9c4191a1e0 Initial code commit [SCI-102] 2017-01-05 13:04:19 +01:00
Luka Murn
3bee9d2e12 Save an (yet unworking) version of user smart annotations 
Used so other devs can start working on smart annotations.
 2017-01-04 10:54:02 +01:00
Luka Murn
e16c826bb1 Version bump to 1.6.0 2016-12-22 11:43:52 +01:00
Oleksii Kriuchykhin
b537feb8a0 Added large preview [SCI-694] 2016-12-16 17:07:08 +01:00
Oleksii Kriuchykhin
0541253ffa Added modal for images preview [SCI-694] 2016-12-16 15:53:16 +01:00
Zmago Devetak
c8631077df Merge pull request #361 from biosistemika/improved-sample-table 
Improved sample table
 2016-12-16 15:37:54 +01:00
zmagod
2426539715 fixes long names in columns dropdown [fixes SCI-784] 2016-12-13 14:54:37 +01:00
zmagod
40fdfef67f setup delayed_paperclip gem 2016-12-08 15:24:14 +01:00
zmagod
ac52e643be cleanup direct upload 2016-12-08 11:26:13 +01:00
zmagod
83aae59eed adds sample groups index page 2016-12-02 09:33:09 +01:00
Luka Murn
7309da9d92 Version bump to 1.5.1 2016-12-01 15:54:08 +01:00
Matej Zrimšek
46465060d0 Added automatic sign in with token authentication, needed when signing in from different webpage. [closes SCI-689] 2016-11-30 16:56:56 +01:00
zmagod
1859df0319 fix hound 2016-11-30 09:44:49 +01:00
Luka Murn
76ec77fce4 Merge pull request #329 from biosistemika/simplify-signup 
Merge simplify-signup into master
 2016-11-30 09:41:20 +01:00
zmagod
12848f15fa adds sample_type index view with all crud actions 2016-11-29 17:15:54 +01:00
okriuchykhin
f9c8223fe5 Merge pull request #321 from okriuchykhin/ok_SCI_736 
Improve regexp for image whitelisting [SCI-736]
 2016-11-28 15:46:54 +01:00