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2035 commits 43 branches 185 tags 169 MiB
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491 commits

Author SHA1 Message Date
Mojca Lorber
cf00ecd62e new experiment redirection 2017-04-20 17:55:28 +02:00
Mojca Lorber
0bae4657f6 add experiment level to user smart annotation notification 2017-04-20 13:21:02 +02:00
Mojca Lorber
b1e939e715 add experiment to activities 2017-04-20 13:16:11 +02:00
zmagod
0757563d02 adds step tiny_mce asset relation 2017-04-19 17:22:57 +02:00
mz3944
a0b5a94d67 Merge pull request #564 from mz3944/mz-SCI-856 
Case insensitive email invitation
 2017-04-19 09:36:46 +02:00
zmagod
37be04c09c add tiny_mce controller 2017-04-19 09:13:16 +02:00
Matej Zrimšek
bafdbf4082 Email is now case insensitive when inviting users by it. [fixes SCI-856] 2017-04-18 18:01:29 +02:00
mz3944
0ebf294844 Merge pull request #562 from mz3944/mz-SCI-1187 
Added general locale for cases when a name is optional and is not spe…
 2017-04-18 15:26:35 +02:00
Matej Zrimšek
a889174938 Name of result tables should be nil, as it can't be specified. [fixes SCI-1187] 2017-04-18 15:08:13 +02:00
Zmago Devetak
e1a30cc17c Merge pull request #558 from ZmagoD/zd_SCI_1192 
fixes broken users search method for smart annotation [fixes SCI-1192]
 2017-04-14 15:38:33 +02:00
zmagod
8af3858209 fix hound 2017-04-14 11:13:58 +02:00
zmagod
9ee971c24b fixes broken users search method for smart annotation [fixes SCI-1192] 2017-04-13 16:14:12 +02:00
Mojca Lorber
27c661d7c4 fix bug with changing user own role from admin to normal user 2017-04-12 16:56:10 +02:00
zmagod
90faeec410 fixes typos and protocol step links 2017-04-10 11:21:28 +02:00
zmagod
e77df92017 fix samples_controller 2017-04-06 15:26:24 +02:00
zmagod
9bb1bb3f9b refactor [fixes SCI-825] 2017-04-06 15:08:03 +02:00
zmagod
439cd0cd89 add notification to experiments 2017-04-06 14:55:18 +02:00
zmagod
046b608018 add notification for my_module/project comments 2017-04-06 14:07:22 +02:00
zmagod
b398bb7516 add step annotations methods in steps_action concerns 2017-04-06 13:06:20 +02:00
zmagod
f16607579f refactor steps annotation 2017-04-06 13:03:13 +02:00
zmagod
bb437bd8c5 adds notification to results annotation 2017-04-06 09:33:49 +02:00
zmagod
d331911ffe completed step annotations 2017-04-06 08:42:16 +02:00
zmagod
99c116f257 first run 2017-04-04 09:19:43 +02:00
Oleksii Kriuchykhin
42ccefe2ce Remove logs table and old unused logging code [SCI-1127] 2017-03-30 11:47:57 +02:00
Zmago Devetak
2b35b34eb8 Merge pull request #529 from ZmagoD/zd_SCI_1135 
fixes alert messages in samples [fixes SCI-1135]
 2017-03-29 14:57:11 +02:00
zmagod
0096f9dc14 refactor 2017-03-29 09:32:23 +02:00
zmagod
9ce95470b3 fixes alert messages in samples [fixes SCI-1135] 2017-03-28 15:14:05 +02:00
zmagod
0996c14449 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_765 2017-03-27 10:41:58 +02:00
zmagod
2235fd3fb7 adds view if download expires 2017-03-27 10:38:28 +02:00
mlorb
3beb179f87 Merge pull request #514 from biosistemika/ml_sci_1089 
Add error messages to sample group/type edit/delete actions [SCI-1089]
 2017-03-27 09:57:32 +02:00
zmagod
4635a3320d Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1003_add_extends 2017-03-24 16:09:28 +01:00
zmagod
023b3213e8 fixes email link [fixes SCI-765] 2017-03-24 12:10:07 +01:00
zmagod
94732c6d18 adds delayed zip generator 2017-03-23 15:45:02 +01:00
Oleksii Kriuchykhin
2edebb282a Add team_id field to assets and tables [SCI-1046] 2017-03-23 10:36:55 +01:00
zmagod
4385c68f5f adds zip_export utility first run 2017-03-21 16:15:11 +01:00
zmagod
d8955d1a78 fixes breadcrumbs in office file [fixes SCI-1111] 2017-03-20 13:48:45 +01:00
Mojca Lorber
83fa8570d7 refactoring 2017-03-17 17:52:15 +01:00
zmagod
5cc6cd094e refactor 2017-03-17 16:47:58 +01:00
zmagod
307fef17d8 fixes owner id if empty 2017-03-15 18:01:15 +01:00
Zmago Devetak
1afb4c9a42 Merge pull request #515 from ZmagoD/file_owner_id_bug 
fixes bug with wopi contorller
 2017-03-15 17:40:07 +01:00
zmagod
c5156f5ca3 fixes bug with wopi contorller 2017-03-15 17:33:36 +01:00
Mojca Lorber
4792bd87b9 fix error message when editing custom column on locked task 2017-03-15 14:09:44 +01:00
zmagod
856a4611c6 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1003_add_extends 2017-03-14 15:58:08 +01:00
zmagod
15b1712a3d fixes bug with organization 2017-03-14 13:29:59 +01:00
zmagod
df2abe5d17 fixed typo 2017-03-13 13:51:31 +01:00
zmagod
7b16e5643e fix assets preprocesor for wopi files 2017-03-13 13:20:49 +01:00
zmagod
0c2523beca Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-03-10 16:21:43 +01:00
okriuchykhin
2a33391f4b Merge pull request #511 from okriuchykhin/ok_SCI_1090 
Refactoring of the comments using STI [SCI-1090]
 2017-03-10 10:50:43 +01:00
Oleksii Kriuchykhin
456934464a Remove unneeded validation calls [SCI-1090] 2017-03-09 17:20:27 +01:00
zmagod
1d42d46c02 fixes bug with step comments 2017-03-09 16:02:52 +01:00
zmagod
3057965940 fix bug with filenames 2017-03-09 11:48:50 +01:00
zmagod
9939d8df06 refactor 2017-03-09 10:51:54 +01:00
zmagod
49f91184da fixes locals 2017-03-09 09:55:15 +01:00
zmagod
5c2e9a4b04 adds extends and fixes report methods 2017-03-08 14:14:03 +01:00
Luka Murn
800df7a26b Also make button icons work when rendering them via JS 
Closes SCI-1073.
 2017-03-08 13:55:10 +01:00
Oleksii Kriuchykhin
0f8336e5a5 Refactoring of the comments using STI [SCI-1090] 2017-03-08 13:18:20 +01:00
Oleksii Kriuchykhin
4868ec5331 Remove task completion duplicated code [SCI-1075] 2017-02-28 17:07:59 +01:00
okriuchykhin
8e18ff44a6 Merge pull request #479 from okriuchykhin/ok_SCI_999 
Add task complete/uncomplete functionality [SCI-999]
 2017-02-20 15:19:00 +01:00
Oleksii Kriuchykhin
4fb5fa79af Move task completion activity and notification creation to separate methods [SCI-999] 2017-02-16 13:36:05 +01:00
Oleksii Kriuchykhin
218e96b1f0 Code style fixes [SCI-999] 2017-02-16 11:45:07 +01:00
zmagod
836baa7412 fixes bug with user teams table [fixes SCI-987] 2017-02-15 10:06:21 +01:00
Luka Murn
d097f0dd15 Merge pull request #477 from Ducz0r/lm-sci-928 
Refactor, merge, unify, improve, update, beautify settings page [SCI-928]
 2017-02-13 16:42:57 +01:00
Luka Murn
1b6f50647c Please Hound 2017-02-13 16:40:27 +01:00
Oleksii Kriuchykhin
f97c20e9b5 Fix hound warnings [SCI-999] 2017-02-13 15:42:28 +01:00
Oleksii Kriuchykhin
78d5cbb223 Add links to task completion notification [SCI-999] 2017-02-13 14:51:21 +01:00
Oleksii Kriuchykhin
cf8566df33 Add task complete/uncomplete functionality [SCI-999] 2017-02-10 14:27:20 +01:00
Luka Murn
3eb4faa44b Fix task restore action 
Closes SCI-991.
 2017-02-10 14:08:56 +01:00
Luka Murn
280b7a0e75 Minor fix 2017-02-09 15:10:45 +01:00
Luka Murn
2a9f975c13 Some minor fixes 2017-02-09 14:58:11 +01:00
Luka Murn
f7bd62547e Refactor teams settings into its own controllers 2017-02-09 14:37:59 +01:00
Luka Murn
5cb3eb5e09 Refactor preferences -> move them to subcontroller, subroute 2017-02-09 11:07:16 +01:00
okriuchykhin
c2a69982aa Merge pull request #471 from okriuchykhin/ok_SCI_936 
Adds datatable to all teams page [SCI-936]
 2017-02-07 10:33:33 +01:00
Oleksii Kriuchykhin
cc6b518c7f Check that user is a member of a team when switching to it [SCI-984] 2017-02-03 16:10:37 +01:00
Oleksii Kriuchykhin
db90c5d63b Add datatable to all teams page [SCI-936] 2017-02-02 09:53:59 +01:00
Oleksii Kriuchykhin
031741d122 Disable protocols link if user has no teams [SCI-934] 2017-02-01 14:26:51 +01:00
Oleksii Kriuchykhin
c119b7c014 Make sciNote work for users without any teams [SCI_934] 2017-02-01 14:16:26 +01:00
Zmago Devetak
5c9954bb89 Merge pull request #450 from ZmagoD/zd_SCI_939 
Refactor "organizations" to "teams"
 2017-02-01 13:12:02 +01:00
zmagod
be5faad97c fixes hound 2017-01-31 13:33:55 +01:00
Oleksii Kriuchykhin
d1e69438de Add config option to enable/disable users registration [SCI-935] 2017-01-30 15:04:02 +01:00
zmagod
e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
Mojca Lorber
5bed5f0f4a fix bug with avatar in smart annotations 2017-01-26 17:15:00 +01:00
Oleksii Kriuchykhin
310d8c1920 Refactor smart annotation/auto_link/simple_format rendering [SCI-940] 2017-01-25 17:18:19 +01:00
zmagod
c2c5616078 rename Organization to Team in controllers 2017-01-24 17:06:51 +01:00
Oleksii Kriuchykhin
fe6d6842c2 Add sanitization of group/type to sample edit [SCI-902] 2017-01-24 16:58:03 +01:00
zmagod
21c2f82582 rename controllers where org/organization 2017-01-24 16:57:14 +01:00
Oleksii Kriuchykhin
a04f05eeb3 Add sanitization to sample groups/types [SCI-902] 2017-01-24 14:39:54 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
Oleksii Kriuchykhin
d555ba7905 Add export to protocol management page and code style improvements [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin
14a6705b55 Implemented protocol export through Zip::OutputStream [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin
1abd7fc574 Added xml schemas and zip gem [SCI-742] 2017-01-23 17:34:02 +01:00
Mojca Lorber
44de927cf4 display smart annotations in reports - without rich text fields 2017-01-19 14:22:54 +01:00
Mojca Lorber
b3c423c582 add table name in protocol step 2017-01-18 14:22:18 +01:00
Luka Murn
cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
okriuchykhin
02bfd19d1c Merge pull request #385 from okriuchykhin/ok_SCI_102 
Fix XSS on activites and throghout the rest of app [SCI-102]
 2017-01-16 11:41:38 +01:00
Luka Murn
a0e9e5afa8 Merge pull request #402 from mz3944/mz-sci-848-v2 
Unable to delete samples [SCI-848]
 2017-01-16 10:47:13 +01:00
zmagod
1b2fa78e42 adds user preview to user smart annotation [fixes SCI-832] 2017-01-13 11:34:10 +01:00
Oleksii Kriuchykhin
f567d0307e Fix includes [SCI-102] 2017-01-12 17:02:01 +01:00
Luka Murn
8b01f912a0 Fix new year problems with activities 
Closes SCI-876.
 2017-01-12 14:47:15 +01:00
Matej Zrimšek
93a8e0bdae Fixes sample deletion when coming from experiment page and having modules attached. [SCI-848] 2017-01-12 14:08:29 +01:00
Oleksii Kriuchykhin
d05c16b0ba Added auto_link wrapper with custom sanitization [SCI-102] 2017-01-11 17:02:17 +01:00