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4269 commits 69 branches 179 tags 166 MiB
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950 commits

Author SHA1 Message Date
mlorb 88d5ba369d
Merge branch 'ux-release-1' into ml-sci-2244 2018-04-26 14:07:03 +02:00
Luka Murn cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
mlorb 9e11f3b220 update buttons positions and wording throughout app 2018-04-25 13:57:12 +02:00
Luka Murn cd04596c62
Merge pull request #1111 from Ducz0r/lm-sci-2276-fix 
Update the code for repository table states so it (hopefully) causes less errors [SCI-2276]
 2018-04-25 12:37:27 +02:00
Luka Murn bd6f97fabc Add initializer to include helpers in all assets (including .js) 2018-04-25 10:51:19 +02:00
zmagod 503ad1ba20 removes samples from views [fixes SCI-2304] 2018-04-24 08:26:55 +02:00
zmagod 824962c084 propagate assigned repository items in workflow [fixes SCI-2261] 2018-04-23 11:33:16 +02:00
Luka Murn 68caf56ec2 Add comment to constants 2018-04-20 12:31:22 +02:00
Luka Murn 21e7e7057e Refactor all the methods into two new services 2018-04-20 12:31:22 +02:00
Luka Murn 5e2622ecfc Change default repository state to Ruby representation 
Also remove some dead code from repositories datatables
 2018-04-20 12:31:22 +02:00
zmagod e96b690a5b removes reports link from secondary navigation, fix bug with turbolinks 2018-04-20 11:57:52 +02:00
zmagod dafa29d4bf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2124 2018-04-20 10:33:15 +02:00
mlorb 3249d5db0d
Merge pull request #1100 from mlorb/ml-sci-2303 
Update reports show page to work with new navigation [SCI-2303]
 2018-04-20 09:50:35 +02:00
Zmago Devetak 93fc1af12d
Merge pull request #1083 from ZmagoD/zd_SCI_2259 
set limit on maximum number of dropdown list items [fixes SCI-2259]
 2018-04-19 17:17:54 +02:00
Zmago Devetak 1290435372
Merge pull request #1086 from ZmagoD/zd_SCI_2207 
enables copying of repository items [fixes SCI-2207]
 2018-04-19 17:13:43 +02:00
mlorb d7eccac289
Merge pull request #1099 from mlorb/ml-sci-2167 
Remove breadcrumbs throughout application [SCI-2167]
 2018-04-19 16:11:37 +02:00
Zmago Devetak 540dff25e7
Merge pull request #1091 from ZmagoD/zd_SCI_2254 
adds correct preview images to files [fixes SCI-2254]
 2018-04-19 14:04:24 +02:00
zmagod ce52eb851b add validation to dropdown items 2018-04-19 14:02:42 +02:00
zmagod 66cc76f640 add view label in locales 2018-04-19 12:49:32 +02:00
zmagod 9d282d1800 adds new reports index page [fixes SCI-2124] 2018-04-18 16:47:52 +02:00
mlorb cc34376253 update reports show page to work with new navigation 2018-04-18 14:40:53 +02:00
Luka Murn 2290b75f8a
Merge pull request #1097 from biosistemika/lm-fix-production-compiling 
Change JS compressor from :uglifier to Uglifier.new(harmony: true)
 2018-04-17 17:46:01 +02:00
mlorb c08d72be36 remove breadcrumbs throughout application 2018-04-17 17:00:04 +02:00
Luka Murn a633861e1f Change JS compressor from :uglifier to Uglifier.new(harmony: true) 
This should fix the command rails assets:precompile for production
environment.
 2018-04-17 09:05:19 +02:00
mlorb 04a20ab7ec change links 2018-04-16 17:05:22 +02:00
zmagod bef166ff30 hides the create new inventory button for non admin users [fixes SCI-2296] 2018-04-13 13:39:58 +02:00
Zmago Devetak d466fdf8e8
Merge pull request #1089 from ZmagoD/zd_SCI_2292 
remove unneeded label in destroy repository record modal [fixes SCI-2…
 2018-04-12 16:58:28 +02:00
Zmago Devetak 09e5579f0f
Merge pull request #1087 from ZmagoD/zd_SCI_2240 
rename Repository/Library => Inventory [fixes SCI-2240]
 2018-04-12 16:58:08 +02:00
Zmago Devetak 9d58292dcf
fix 2018-04-12 16:44:38 +02:00
Zmago Devetak f83390e5ad
fix 2018-04-12 16:20:05 +02:00
zmagod d084998906 remove unneeded label in destroy repository record modal [fixes SCI-2292] 2018-04-12 15:00:41 +02:00
Luka Murn 09c60d2468 Fixes per @Ducz0r's request 2018-04-12 14:38:22 +02:00
zmagod 309bd04e61 rename Repository/Library => Inventory [fixes SCI-2240] 2018-04-12 14:11:26 +02:00
Luka Murn 9bf8b5d864 Merge branch 'ok_SCI_1860' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_1860 
Conflicts:
	Makefile
	app/assets/javascripts/projects/index.js.erb
	app/assets/stylesheets/themes/scinote.scss
	config/locales/en.yml
 2018-04-12 13:16:46 +02:00
zmagod 6291857bbf enables copying of repository items [fixes SCI-2207] 2018-04-11 17:17:19 +02:00
zmagod ea4bd8831f fixes bug with CSRF on file upload, fixes turbolink issues with remote form submition [fixes SCI-2284] 2018-04-10 13:19:53 +02:00
mlorb a10f671184
Merge pull request #1081 from mlorb/ml-sci-2123 
Refactor settings into the new navigation bar [SCI-2123]
 2018-04-09 13:21:16 +02:00
zmagod b12f6f1b92 set limit on maximum number of dropdown list items [fixes SCI-2259] 2018-04-09 12:50:25 +02:00
mlorb 8a35ce5c58 add locales 2018-04-09 10:53:03 +02:00
Zmago Devetak bdb6554870
Merge pull request #1049 from ZmagoD/zd_SCI_2218_2219 
adds manage columns page
 2018-04-06 17:06:28 +02:00
mlorb 0c851f227c remove unused locals 2018-04-06 15:00:19 +02:00
mlorb 70dfe66b2d refactoring 2018-04-06 14:20:40 +02:00
zmagod cf7761daaa Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into ok_SCI_2223 2018-04-06 12:56:39 +02:00
mlorb b8e91e91a1 refactor settings into the new navigation bar 2018-04-05 16:30:02 +02:00
Luka Murn 386ede0400 Add special middleware for handling of Rails 5.1 WOPI errors 
Closes SCI-2266.
 2018-04-05 13:26:08 +02:00
zmagod a8a19df06d Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-05 08:51:58 +02:00
okriuchykhin e608d629c7
Merge pull request #1068 from okriuchykhin/ok_SCI_2217 
Refactor file preview modal [SCI-2217]
 2018-04-05 00:18:43 +02:00
Oleksii Kriuchykhin 9720063fb3 Fix tests [SCI-2217] 2018-04-05 00:06:11 +02:00
zmagod 0c05c60ebf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-04 16:06:38 +02:00
Zmago Devetak ab48e4f527
Merge pull request #1072 from ZmagoD/zd_SCI_2239 
change export model wording [fixes SCI-2239]
 2018-04-04 15:40:18 +02:00
Zmago Devetak d1f3a65279
Merge pull request #1073 from ZmagoD/zd_SCI_2206 
add ID column to repository [fixes SCI-2206]
 2018-04-04 15:39:59 +02:00
zmagod 77f80271dd fixes per @mojca 's request 2018-04-04 14:52:59 +02:00
Oleksii Kriuchykhin 3b7977ee3b Merge latest changes from ux-release-1 [SCI-2217] 2018-04-04 14:20:34 +02:00
zmagod 5eb007f4d2 fixes per @mlorb 's request 2018-04-04 13:22:14 +02:00
zmagod 38b84edfb0 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-04-04 12:59:41 +02:00
zmagod e630d3113f add ID column to repository [fixes SCI-2206] 2018-04-04 11:55:11 +02:00
mlorb 11c0f5e5a1
Merge pull request #1067 from mlorb/ml-sci-2243 
Style Guide - refactor colors, typography and buttons [SCI-2243]
 2018-04-03 11:30:02 +02:00
zmagod 3d5137b56f change export model wording [fixes SCI-2239] 2018-04-03 11:22:23 +02:00
mlorb e5e92eb215 fix the rest of the constants 2018-04-03 10:28:39 +02:00
Oleksii Kriuchykhin 51860652c1 Refactor smart annotations modal [SCI-2223] 2018-04-02 20:38:56 +02:00
Oleksii Kriuchykhin f656ad1561 Fix fa icons [SCI-2217] 2018-03-30 17:03:44 +02:00
Zmago Devetak f5f6fa4a4f
Merge pull request #1066 from ZmagoD/zd_SCI_2235 
updated repository import modal html [fixes SCI-2235]
 2018-03-30 14:32:53 +02:00
okriuchykhin a6d45fea0a
Merge pull request #1059 from okriuchykhin/ok_SCI_2205 
Add repository name to record info modal [SCI-2205]
 2018-03-30 14:02:53 +02:00
Oleksii Kriuchykhin cc855cda86 Fix translations [SCI-2205] 2018-03-30 12:48:34 +02:00
okriuchykhin 5e0cf58bc5
Merge pull request #1058 from okriuchykhin/ok_SCI_2111 
Implement search in file repository cells and improve performance [SCI-2111]
 2018-03-30 12:39:47 +02:00
Oleksii Kriuchykhin cc5d8550b1 Refactor file preview modal [SCI-2217] 2018-03-30 11:50:28 +02:00
zmagod 802e917e69 updated repository import modal html [fixes SCI-2235] 2018-03-30 09:47:27 +02:00
zmagod fd88104fe2 adds manage repository link in repository actions dropdown 2018-03-29 17:10:57 +02:00
zmagod 56b0900619 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-03-29 16:42:10 +02:00
zmagod 7c1390ece2 implement sidebar toggle [fixes SCI-2232] 2018-03-28 14:12:11 +02:00
mlorb 22afa61b11 refactor colors 2018-03-28 13:54:01 +02:00
Oleksii Kriuchykhin fac5875cfd Add repository name to record info modal [SCI-2205] 2018-03-26 16:18:09 +02:00
Oleksii Kriuchykhin e42fc3117b Implement search in file repository cells and improve performance [SCI-2111] 2018-03-26 13:19:09 +02:00
zmagod 8f09e1f7a4 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-03-26 13:08:31 +02:00
mlorb b7a14215bc
Merge pull request #1050 from mlorb/ml-sci-2120-v2 
Refactor project navigation [SCI-2120]
 2018-03-26 12:56:19 +02:00
zmagod 3efe06a410 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-03-26 12:02:24 +02:00
zmagod 9e1f285c9e adds missing labels [fixes SCI-2219] 2018-03-26 11:28:14 +02:00
mlorb 1797afa718
Merge branch 'ux-release-1' into ml-sci-2238 2018-03-26 10:44:43 +02:00
mlorb 70e0d8bd1d
Merge pull request #1052 from mlorb/ml-sci-2125 
Implement new Help dropup in navigation [SCI-2125]
 2018-03-26 09:22:39 +02:00
mlorb 83741358d1 fix locales 2018-03-23 16:19:06 +01:00
zmagod baf69461f5 adds edit/create modal and related actions 2018-03-23 16:00:33 +01:00
mlorb eee597b315 fix naming 2018-03-23 15:56:38 +01:00
mlorb 5589b27883 improve message for deleting sample/report items 2018-03-23 14:39:09 +01:00
mlorb faaecec2ff implement new Help dropup in navigation 2018-03-23 14:08:27 +01:00
mlorb bc06542ed7 refactor project navigation 2018-03-22 11:41:33 +01:00
zmagod 3be3c00574 adds manage columns page [fixes SCI-2218] 2018-03-22 09:35:36 +01:00
Oleksii Kriuchykhin 36302ad6e8 Refactor existing columns management to control only Column visibility and order [SCI-2220] 2018-03-21 16:56:36 +01:00
zmagod 81df97f008 add library sidebar and create new library button [fixes SCI-2121] 2018-03-21 09:22:55 +01:00
zmagod 62858bc14f Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-03-20 14:46:11 +01:00
zmagod 1ad8c259d1 add blank page for repositories [fixes SCI-2139] 2018-03-20 14:45:57 +01:00
mlorb 35afc06cbd
Merge pull request #1038 from mlorb/ml-sci-2118 
Code left-side menu bar [SCI-2118]
 2018-03-20 14:40:55 +01:00
Zmago Devetak 75d7ace8c7
Merge pull request #1017 from ZmagoD/zd_SCI_2068 
Write server-side endpoints for custom repositories [SCI-2068]
 2018-03-20 14:30:47 +01:00
mlorb 884eef9d07 Merge remote-tracking branch 'upstream/ux-release-1' into ml-sci-2118 2018-03-20 14:25:59 +01:00
okriuchykhin 935715a8c1
Merge pull request #1043 from okriuchykhin/ok_SCI_2193 
Rename record to item in repository row info modal [SCI-2193]
 2018-03-20 09:53:34 +01:00
Oleksii Kriuchykhin acbd40e0d1 Remove Power Up button [SCI-2117] 2018-03-18 22:12:29 +01:00
Oleksii Kriuchykhin 79fd2fbb2f Rename record to item in repository row info modal [SCI-2193] 2018-03-18 13:51:40 +01:00
Oleksii Kriuchykhin a105e61d48 Remove tutorial [SCI-1860] 2018-03-18 13:18:05 +01:00
zmagod ee03115361 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2095 2018-03-16 15:32:40 +01:00
zmagod 1cdba5e0d3 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2068 2018-03-16 11:05:16 +01:00
zmagod c2eb6d6900 fixes hound adds specs to repository_list_items controller 2018-03-16 10:53:05 +01:00
zmagod d69754af04 implement search on list items dropdown, update, create actions [fixes SCI-2070] 2018-03-15 15:43:16 +01:00
mlorb 9de998e85c code left-side menu bar 2018-03-14 14:33:34 +01:00
Zmago Devetak d7679dcb99
Merge pull request #1032 from ZmagoD/zd_SCI_2141 
refactor global activities in separate page [fixes SCI-2141]
 2018-03-13 15:20:14 +01:00
zmagod dd2f7dd417 Merge branch 'master' of https://github.com/biosistemika/scinote-web into samples_to_repositories_table_migration 2018-03-13 13:24:36 +01:00
Oleksii Kriuchykhin be1ead22e0 Implement importable selector for repository columns [SCI-2078] 2018-03-13 11:36:05 +01:00
zmagod 8fe173e831 re-structure top navigation bar 2018-03-12 16:27:35 +01:00
zmagod e218cae453 refactor global activities in separate page [fixes SCI-2141] 2018-03-12 11:01:23 +01:00
mlorb 64e26e1c60 add file custom column type to db 2018-03-09 17:04:54 +01:00
zmagod 4f951f6679 adds unit specs for datatable service [fixes SCI-2068] 2018-03-09 14:22:00 +01:00
Oleksii Kriuchykhin 1765d83cd1 Refactor search to support repository list items [SCI-2108] 2018-03-09 11:05:43 +01:00
zmagod fb66131e29 setup endpoint for repository_rows paging/search 2018-03-06 16:32:39 +01:00
mz3944 bb21f6543c
Merge pull request #1004 from mz3944/mz-SCI-2011 
Wrapping up the permissions [SCI-2011]
 2018-03-06 07:10:40 +01:00
mlorb 5e44859ce0
Merge pull request #1010 from mlorb/ml-sci-1826 
Sign up with linkedIn account [SCI-1826]
 2018-03-05 13:24:36 +01:00
Zmago Devetak 50ccec5007
Merge pull request #1009 from ZmagoD/zd_SCI_2066 
add info modal for repository items [fixes SCI-2066]
 2018-03-05 12:49:29 +01:00
mz3944 f40b0bd095
Merge pull request #1006 from mz3944/mz-SCI-2065 
Extend description for adding files to step/result [SCI-2065]
 2018-03-04 13:34:37 +01:00
zmagod 2b55cd7090 rename variables 2018-03-02 14:14:27 +01:00
mlorb f5949e9d10 refactor 2018-03-01 17:52:24 +01:00
Luka Murn 070450f813 Merge branch 'release-1.12.11' 
Conflicts:
	config/initializers/extends.rb
 2018-03-01 14:04:57 +01:00
mlorb e66eab7f57 fix typo 2018-03-01 09:45:52 +01:00
mlorb 9199f287ba fix hound 2018-03-01 09:18:36 +01:00
mlorb 08439e7f58 sign up with linkedIn account 2018-02-28 18:12:21 +01:00
zmagod e3ca782996 add info modal for repository items [fixes SCI-2066] 2018-02-27 16:21:46 +01:00
Oleksii Kriuchykhin aa933ad1f4 Add extendable file types mappings for icons [PIP-46] 2018-02-26 14:23:02 +01:00
Matej Zrimšek 48bdd84163 Updated file upload text, to notify user of another approach to uploading files. 2018-02-22 14:18:53 +01:00
okriuchykhin 0503aa054d
Merge pull request #999 from okriuchykhin/smtp_auth_method 
Allow setting of SMTP auth method through ENV variable
 2018-02-15 13:40:20 +01:00
Oleksii Kriuchykhin 00fcf5404b Allow setting of SMTP auth method through ENV variable 2018-02-14 17:02:28 +01:00
Matej Zrimšek 68206cb591 Added missing checks for whether task/experiment/project is active for experiment level permissions. Minor code refactoring and restyling. 2018-02-14 14:39:08 +01:00
Zmago Devetak 027297d46a
Merge pull request #985 from ZmagoD/zd_SCI_2008 
fixes bug with assets upload on task result page,
 2018-02-12 11:40:44 +01:00
okriuchykhin 5a94b40d9c
Merge pull request #978 from okriuchykhin/ok_SCI_2003 
Improve files handling in protocol cloning [SCI-2003]
 2018-02-12 11:01:59 +01:00
zmagod 6b7ff11bcf setup models for repository list column [fixes SCI-2015] 2018-02-07 15:28:28 +01:00
Luka Murn b5ac4494d5 Uncommit load_addons_specs.rb 2018-02-06 16:58:15 +01:00
zmagod bd1345d560 fixes bug with assets upload on task result page, 
adds ctrl+v listener to upload images from clipboard, adds image preview modal
 2018-02-06 15:39:19 +01:00
Luka Murn 5281d0792e Comment load_addons_specs.rb out 2018-02-06 08:48:33 +01:00
Luka Murn 4ddc7dfa85 Comment react-hijack code 2018-02-06 08:00:29 +01:00
Oleksii Kriuchykhin 16e1d072b9 Improve files handling in protocol clonning [SCI-2003] 2018-02-01 15:44:08 +01:00
zmagod 2684d2b515 fix typo 2018-02-01 15:34:40 +01:00
zmagod 952173fbd6 escape if no feature folder present 2018-02-01 14:03:36 +01:00
zmagod c6d585bc57 adds spec/features loader [fixes SCI-1998] 2018-02-01 13:37:52 +01:00
Zmago Devetak ccab688728
Merge pull request #975 from ZmagoD/zd_SCI_2001 
Zd sci 2001
 2018-01-31 14:42:41 +01:00
okriuchykhin df66a3b410
Merge pull request #973 from okriuchykhin/ok_SCI_1975 
Allow optional tagging for logs [SCI-1975]
 2018-01-31 13:31:01 +01:00
Luka Murn d4183aa253 Fix a typo 2018-01-31 08:20:42 +01:00
Oleksii Kriuchykhin bdc60b9d53 Allow optional tagging for logs [SCI-1975] 2018-01-30 18:24:01 +01:00
zmagod 029d69b033 revert to old setting [fixes SCI-1967] 2018-01-29 15:42:22 +01:00
Luka Murn f752f82658 Fix canaid initializer so it only uses required Gems' permissions 
This should make sure that other addons that are located in
/addons folder, but not actually required by the core,
do not cause trouble.
 2018-01-26 16:24:28 +01:00
Zanz2 e484f0569b
Merge pull request #960 from Zanz2/fixed_styling_after_merge 
Fixed some styling bugs that happened after the merge
 2018-01-26 08:19:29 +01:00
okriuchykhin 0b1f43c1c5
Merge pull request #954 from okriuchykhin/ok_SCI_1970 
Add health check endpoint to API controller [SCI-1970]
 2018-01-25 14:33:37 +01:00
zanzdebian 8bd8c34c4d Fixed some styling bugs that happened after the merge, its using new function now, with old style, ( the old style turns the mouse cursor into a hand when it hovers over button) 2018-01-25 13:45:35 +01:00
mlorb ab2955c9bb
Merge pull request #956 from mlorb/ml-sci-1491 
Add notification for previous task has been completed [SCI-1491]
 2018-01-25 11:35:19 +01:00
Zmago Devetak 4716fc7752
Merge pull request #955 from biosistemika/decoupling 
Decoupling
 2018-01-25 11:33:06 +01:00
Mojca Lorber ac8b1769be add notification for previous task has been completed 2018-01-23 15:53:33 +01:00