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1937 commits

Author SHA1 Message Date
Luka Murn 5d3a0d7eea
Merge pull request #2003 from Ducz0r/lm-remove-legacy-projects-views 
Remove legacy projects archive HTML views
 2019-08-21 17:08:27 +02:00
aignatov-bio d70b7e2272
Make share status icon dynamic (#2007) 2019-08-21 15:32:57 +02:00
aignatov-bio 5e3f1d59f5
Fix inventory rows import (#1997) 2019-08-21 15:32:45 +02:00
Luka Murn 2db39c049e Remove projects archive page 2019-08-21 13:10:54 +02:00
aignatov-bio f94b8165dc
Fix marvinjs edit button and icon (#1985) 2019-08-21 11:15:57 +02:00
aignatov-bio 0b85dcbead
Fix long inventory names (#1999) 2019-08-21 10:39:48 +02:00
aignatov-bio e2ad383c69
Fix UX for task inventory dropdown and big task title [SCI-3791] (#1998) 
* Fix ux for task inventory dropdown and big task title

* Fix markup
 2019-08-21 10:39:37 +02:00
Anton Ignatov a2c50cbe38 Add new permission check for share button 2019-08-20 15:08:53 +02:00
Mojca Lorber 530d09df64 add i-shared inventory icon 2019-08-19 15:43:55 +02:00
aignatov-bio 58d9be480f
Remove rename button from dropdown (#1994) 2019-08-19 14:29:38 +02:00
aignatov-bio a505ef2462
Fix error in inventories for new teams [SCI-3788] (#1992) 
* Fix error in inventories for new teams

* Replace with current team
 2019-08-19 14:01:48 +02:00
aignatov-bio b6661682ad
Fix shared inventory in task dropdown (#1993) 2019-08-19 13:56:02 +02:00
aignatov-bio 2cf7f52f15
Add inline editing for inventories [SCI-3763] (#1991) 
* Add inline editing for inventories

* Remove old locals

* Markup fix
 2019-08-19 13:30:56 +02:00
Urban Rotnik 89f289660b Add share_with_all feature to service, add new activities 2019-08-14 11:03:15 +02:00
Urban Rotnik 0ce331227c Update permission and model to share repository over all teams 2019-08-13 14:07:24 +02:00
aignatov-bio 737f9e572c
Replace marvinJS logo and fix some merge issues [SCI-3731] (#1976) 
* Replace marvinJS logo and fix some merge issues

* Fix tests
 2019-08-13 11:04:19 +02:00
aignatov-bio aad726ac40
Update CSS for share modal (#1978) 2019-08-12 15:02:16 +02:00
Oleksii Kriuchykhin c352a73d79 ActiveStorage fixies after latest master merge [SCI-3757] 2019-08-09 14:56:00 +02:00
Urban Rotnik d04b0ccff1 Move '+ new inventory' link above list in sidebar 2019-08-09 14:15:51 +02:00
Urban Rotnik 7719b825e3 Update wording for sharing activities, rename button, add view-only paragraph 2019-08-09 14:15:51 +02:00
Urban Rotnik 23d7d117e9 Remove Repository's team from sharring list 2019-08-09 14:15:50 +02:00
Urban Rotnik 32783576c1 Add controller action 'multiple_update' 
Add controller action, add update permission activity, add JS for handling ajax req
 2019-08-09 14:15:50 +02:00
Urban Rotnik 2648521924 Invite modal with form 2019-08-09 14:15:49 +02:00
Urban Rotnik 466b05a5bc Update repository index page 2019-08-09 14:15:48 +02:00
Mojca Lorber 26bd81621f Add new icons also to the inventories list in navigation 2019-08-09 14:13:02 +02:00
Mojca Lorber 7d4941015f Update global search, so it will be able to search through shared inventories 2019-08-09 14:13:01 +02:00
Mojca Lorber 7e9be932f3 Make scope for repositories accessible by teams and simplify read permission 2019-08-09 14:13:00 +02:00
Mojca Lorber 15432ac851 Make changes to inventory list in navigation based on new mockup 2019-08-09 14:13:00 +02:00
Mojca Lorber cac7dab440 Show shared inventories in left navigation and fix read repository permission 2019-08-09 14:13:00 +02:00
Urban Rotnik 077369d960 Update permissions for Repositories 2019-08-09 14:12:59 +02:00
Oleksii Kriuchykhin 973efa55e1 Merge branch 'master' into ok_SCI_3678 2019-08-08 11:17:07 +02:00
Oleksii Kriuchykhin b4f632dba8 Remove dowload endpoint from assets controller [SCI-3680] 2019-08-07 15:21:41 +02:00
Oleksii Kriuchykhin eaf9d59819 Merge branch 'activestorage_migration' into ok_SCI_3679 2019-08-06 15:27:31 +02:00
Urban Rotnik 50045b9796
Merge pull request #1956 from urbanrotnik/ur-sci-3733-add-button-new 
Add additional NewStep button [SCI-3733]
 2019-08-06 15:26:51 +02:00
Oleksii Kriuchykhin 423528933e Switch to global JS constants [SCI-3679] 2019-08-06 15:06:19 +02:00
Anton Ignatov e2e876b2a3 Merge branch 'activestorage_migration' into ai-sci-3728-fix-active-storage-tests 2019-08-05 13:51:04 +02:00
Jure Grabnar d9f6c249f9 Fix CVE-2015-9284 omniauth security precautions 
Close SCI-3588
 2019-07-31 16:59:38 +02:00
Jure Grabnar 6546bd1532 Add omniauth-rails_csrf_protection gem 
Close SCI-3588
 2019-07-31 16:05:06 +02:00
Jure Grabnar 971f52b4b0
RTE image in search does not have preview (#1952) 
RTE image in search does not have preview
 2019-07-30 07:44:54 +02:00
Anton Ignatov a4b2825258 Fix tests for active storage 2019-07-26 15:58:51 +02:00
Urban Rotnik 7626d43ee4
Merge pull request #1947 from urbanrotnik/ur-sci-3707-archived-results-not-in-row 
Fix for archived results in row [SCI-3707]
 2019-07-26 13:03:34 +02:00
Oleksii Kriuchykhin ccf76b8531 Move repository_datatable to JS file [SCI-3679] 2019-07-26 13:00:25 +02:00
Urban Rotnik 88fbd6c0af Fix for archived results in row 2019-07-26 11:16:53 +02:00
Urban Rotnik aa36d93bea Add additional NewStep button 2019-07-26 11:01:36 +02:00
Oleksii Kriuchykhin 5e65b07bdc Implement DirectUpload for Steps, Results and Inventories [SCI-3679] 2019-07-25 18:00:24 +02:00
Jure Grabnar d3a5651998 Add remaining missing description in global search 
Close SCI-3723
 2019-07-25 14:27:53 +02:00
Jure Grabnar 11b3b7b4e9 Fix search description for step 2019-07-25 14:15:45 +02:00
Jure Grabnar 5847a8b05c Convert HOT table after it was initialized 
Closes SCI-3704
 2019-07-23 14:17:22 +02:00
Anton Ignatov 1e8663548e Add MarvinJS assets to TinyMCE 2019-07-16 13:40:54 +02:00
Anton Ignatov 3339c1fbbf Add MarvinJS to Result and TinyMce MarvinJS refactor 2019-07-15 17:17:14 +02:00
aignatov-bio a8623002e6
Small UI changes [SCI-3699] (#1935) 
* Small ui changes

* Markup fix

* Add class for addons
 2019-07-15 13:28:20 +02:00
aignatov-bio 3c32fe0895
Fix formulas in table report (#1934) 2019-07-15 13:27:27 +02:00
Urban Rotnik 5cf100a787 Show 'published_on' instead of 'created_on' on external_protocols list 2019-07-12 16:56:07 +02:00
mlorb 5bc8eb7392
Merge pull request #1921 from mlorb/ml-sci-3641 
Fix page redirect and add success flash msg after protocols.io import [SCI-3641]
 2019-07-12 15:52:40 +02:00
Anton Ignatov ffd415d409 Inital refactor for Assets model 2019-07-12 15:02:06 +02:00
Anton Ignatov 7831b0a089 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 15:00:07 +02:00
Mojca Lorber d07e04e511 Fix dooble flash_alerts load 2019-07-12 14:33:41 +02:00
aignatov-bio 4bae87e3f7
Styling changes in DOCX report [SCI-3633] (#1899) 
* Styling changes in DOCX report

* Update result comments in docx report

* Fix markup
 2019-07-12 13:48:14 +02:00
Anton Ignatov 57a273d5d0 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 11:34:41 +02:00
aignatov-bio 26ef970a1e
Add academy button (#1924) 2019-07-12 11:15:34 +02:00
Mojca Lorber f8afc92606 Fix page redirect and add success flash msg after protocols.io import action 2019-07-11 09:50:39 +02:00
aignatov-bio ac7970209c
Add helper for inline JS code (#1916) 2019-07-11 09:31:30 +02:00
Oleksii Kriuchykhin 64b7a5646a Implement custom document file previewer [SCI-3677] 2019-07-10 14:37:23 +02:00
aignatov-bio 7ac410e573
Fix visual bugs across ProtocolIo [SCI-3671] (#1914) 
* Fix visual bugs across ProtocolIo
 2019-07-10 13:00:32 +02:00
mlorb 23270393b0
Merge branch 'master' into ml-sci-3634 2019-07-09 14:38:00 +02:00
Mojca Lorber 7bb82e2fc2 Fix eternal protocols tab visuals 2019-07-09 14:35:40 +02:00
aignatov-bio 1a75a31647
Remove webinar button [SCI-3664] (#1906) 
* Remove webinar button

* Remove constants and i18n
 2019-07-09 14:01:09 +02:00
aignatov-bio fc78d8f401
Fix tooltip position (#1909) 2019-07-09 14:00:53 +02:00
Urban Rotnik be77746aef Fix description styling of components 2019-07-09 13:41:51 +02:00
Oleksii Kriuchykhin a1941a21dc Futher refactoring of old Paperclip methods [SCI-3539] 2019-07-09 10:28:15 +02:00
aignatov-bio 4fe3119bd2
Fix step description RTE images in report preview (#1888) 2019-07-08 15:23:44 +02:00
aignatov-bio 01a01157d3
Replace Handson table in reports with simple table [SCI-3636] (#1895) 
* Replace handsone table in reports with simple table

* Add result tables
 2019-07-08 13:19:12 +02:00
Jure Grabnar ae7da78bff
Merge pull request #1897 from jbargu/jg_sci_3646 
[SCI-3646] Add paging functionality to external protocols
 2019-07-08 13:06:19 +02:00
aignatov-bio 2baca019eb
Remove tooltip from step edit button (#1905) 2019-07-08 12:52:03 +02:00
Oleksii Kriuchykhin 9d926dc956 Refactor TinyMce assets, user avatars, zip files [SCI-3539] 2019-07-05 16:56:05 +02:00
Mojca Lorber 989c10872c Fixes visual bugs on protocols.io and home page 2019-07-04 18:22:51 +02:00
Jure Grabnar dc7fee51fa Add Show more protocols functionality to external protocols 
Closes SCI-3646
 2019-07-04 15:35:18 +02:00
Jure Grabnar 4c3df5a67d Change tabs to spaces 2019-07-04 09:43:05 +02:00
Oleksii Kriuchykhin c0c8e0e1a3 Refactor Experiment workflow images [SCI-3539] 2019-07-04 09:33:12 +02:00
Jure Grabnar 20134c9f8a
Features/protocolsio integration (#1893) 
Features/protocolsio integration
 2019-07-03 17:32:20 +02:00
Jure Grabnar 721bb9ab77
SCI-3649 All reagent data from step are not imported (#1881) 
SCI-3649 All reagent data from step are not imported
 2019-07-03 16:54:25 +02:00
Miha Mencin 5a437c0a0f coding style fixes 2019-07-03 15:32:55 +02:00
Miha Mencin 964e91e1d2 removi mol weight from general section 2019-07-03 15:16:47 +02:00
Miha Mencin 012b828708 additional filters for blank string when displaying the reagent details 2019-07-03 14:13:55 +02:00
Miha Mencin 882e453b9c
Merge pull request #1880 from biosistemika/SCI-3644-hide-import-button 
SCI-3644 Import button is always visible
 2019-07-03 11:50:10 +02:00
Miha Mencin 611c417b43 code review changes 2019-07-03 09:21:41 +02:00
Miha Mencin ab038ffdf7 SCI-3649 adding catalog number, fixing up the design a bit 2019-07-02 19:47:05 +02:00
Miha Mencin 74b4e0d774 SCI-3644 hide the import button and show it only on hover & when appropriate user 2019-07-02 18:24:07 +02:00
Miha Mencin 4efb0b5a4a SCI-3645 added descending sorting by name 2019-07-02 17:42:55 +02:00
aignatov-bio 378e91b426
Fix links on search page (#1867) 2019-07-02 11:21:00 +02:00
Oleksii Kriuchykhin 4ea6b56582 Fix Step and Result file previews [SCI-3539] 2019-07-01 23:30:20 +02:00
Anton Ignatov 1f40fa69fc Merge branch 'features/marvinjs-integration' of https://github.com/biosistemika/scinote-web into features/marvinjs-integration 2019-07-01 11:51:27 +02:00
aignatov-bio a08d93376c
Add promo modal when MarvinJS disabled (#1872) 2019-07-01 11:51:13 +02:00
Anton Ignatov c9ae9f056e Merge branch 'okriuchykhin-ok_SCI_3539' into features/marvinjs-integration 2019-07-01 10:44:29 +02:00
aignatov-bio 2793777463
Features/docx report (#1873) 
* Initial setup for docx report

* Add render for project, experiment, my_module

* Implement converter for RTE fields

* Add all report elements

* fix markup

* Change headers, remove empty blocks, refactored repository draw

* Add smart annotations support

* Fix justify fields

* Prepare for addons integration

* Fix markup

* Add comments to GemFile

* Fix TinyMCE error

* Change UI for new report download selector

* Fix file error in inventory cell for docx

* Fix i18n object for header
 2019-07-01 10:14:16 +02:00
Anton Ignatov 390002f40f Merge branch 'ok_SCI_3539' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_3539 2019-07-01 10:12:26 +02:00
Oleksii Kriuchykhin 5acb16d43e Update Asset helper methods [SCI-3539] 2019-06-28 08:17:09 +02:00
Jure Grabnar bc4b07cc0f Refactor hardcoded protocol_source in SearchService 2019-06-28 02:26:31 +02:00
Jure Grabnar 1ccabf62b3 Add preview banner in external protocols 2019-06-28 01:38:33 +02:00
Jure Grabnar d3afcbed50 Style card view on external protocols 
Closes SCI-3535
 2019-06-28 00:43:05 +02:00
Jure Grabnar 0a77cedaf8 Fix sorting of external protocols and start showing results 2019-06-27 22:48:56 +02:00
Jure Grabnar 8338892fc6 Update external protocols form to include sort_by 2019-06-27 21:26:28 +02:00
Urban Rotnik 9cb4454537 New implementation for attachments creation 2019-06-27 17:02:06 +02:00
Urban Rotnik 1fd0ca6795 Add steps preview 2019-06-27 16:46:02 +02:00
Urban Rotnik 2761079479 Add modal for import 2019-06-27 16:46:02 +02:00
Anton Ignatov 31c6802a06 Add support for marvinjs on service 2019-06-23 00:09:49 +02:00
Anton Ignatov 8240c8baad Initial refactoring for remote api support 2019-06-22 01:51:59 +02:00
Anton Ignatov 7e5c39d3e4 Merge branch 'master' into features/marvinjs-integration 2019-06-21 14:51:45 +02:00
Alex Kriuchykhin db7c6435b3
Merge pull request #1851 from okriuchykhin/ok_SCI_3436 
Implement saving of attachments ordering on steps [SCI-3436]
 2019-06-20 11:31:15 +02:00
Jure Grabnar b3c3b68dc2 Add external preview to External Protocols tab 
Closes SCI-3563
 2019-06-19 22:54:20 +02:00
aignatov-bio 4ddcbe5d75 Fix user permission for recent protocols (#1843) 2019-06-19 14:06:02 +02:00
Urban Rotnik bf6041e13d Update sanitization of html descriptions 2019-06-19 11:05:22 +02:00
Urban Rotnik 2a579f2240 Add Warnings, Before start and Guidelinese to protocol description 2019-06-19 09:02:42 +02:00
Jure Grabnar 4f6397b5b9 Add form to external_sources#new action 
Closes SCI-3532
 2019-06-17 12:24:15 +02:00
Jure Grabnar f7c6f78925 Add external_protocols#index action 2019-06-17 12:24:14 +02:00
Jure Grabnar 7adef9cc9e Change sort buttons positions 
Closes SCI-3534
 2019-06-17 12:24:13 +02:00
Jure Grabnar d103f8ffec Finish external protocols screen 
Closes SCI-3534
 2019-06-17 12:24:12 +02:00
Jure Grabnar 0b60da9b4c Add ExternalProtocols skeleton tab 2019-06-17 12:24:12 +02:00
Urban Rotnik 2bb4f558b7 View rendering simplified, small improvements 2019-06-17 12:24:09 +02:00
Urban Rotnik 807104035c Add StepBuilder, TableBuilder, AssetBuilder for PIO, normalized updated 2019-06-17 12:24:09 +02:00
aignatov-bio da8d748c49
Fix small comments bugs (#1832) 2019-06-14 16:20:47 +02:00
aignatov-bio 7a3eedf461
Adding missing avatars to comments (#1838) 2019-06-14 16:20:13 +02:00
aignatov-bio 52a2f5cd0e
Add recent protocols dropdown to task page [SCI-3417] (#1800) 
* Add recent protocols dropdown to task page
 2019-06-13 15:47:29 +02:00
Alex Kriuchykhin 599274eb13
Merge pull request #1830 from okriuchykhin/ok_SCI_3528 
Make repositories more extendable [SCI-3528]
 2019-06-13 09:45:18 +02:00
Oleksii Kriuchykhin a855eade4c Merge branch 'master' into ok_SCI_3461 2019-06-11 17:48:02 +02:00
Oleksii Kriuchykhin 6e1a7a3392 Implement saving of attachments ordering on steps [SCI-3436] 2019-06-11 10:08:33 +02:00
Oleksii Kriuchykhin 8920d38a02 Make repositories more extendable [SCI-3528] 2019-06-06 17:28:59 +02:00
Oleksii Kriuchykhin e543a849d4 Add document file preview generation with LibreOffice [SCI-3145] 2019-06-05 14:52:30 +02:00
Alex Kriuchykhin db399864f8
Merge pull request #1820 from okriuchykhin/ok_SCI_3526 
Update Handsontable to 6.2.2 [SCI-3526]
 2019-06-04 14:59:22 +02:00
aignatov-bio d207cf5dce
Refactored comments over SciNote [SCI-3505] (#1808) 
* Preparing helpers for comments

* Refactored comments over scinote

* Update events
 2019-06-04 14:40:21 +02:00
Oleksii Kriuchykhin 01a5a17bb4 Update Handsontable to 6.2.2 [SCI-3526] 2019-06-04 14:31:37 +02:00
aignatov-bio cd7460a4bd
Add croppie tool to avatar editing [SCI-3502] (#1801) 
* Add croppie tool to avatar editing
 2019-05-31 15:44:27 +02:00
Anton Ignatov c9a29b12ba Merge branch 'master' into features/marvinjs-integration 2019-05-31 10:27:14 +02:00
Mojca Lorber a3c29738bb Hide create office file button to user without permission 2019-05-27 14:58:10 +02:00
Oleksii Kriuchykhin 84a2ad4487 Refactor the async thumbnail reloading (spinner) [SCI-3461] 2019-05-21 17:29:33 +02:00
aignatov-bio 2cee46a10d
Fix experiment name length (#1789) 2019-05-21 15:54:01 +02:00
aignatov-bio d97e803d01
Adding placeholder to TinyMCE editor (#1788) 2019-05-21 15:53:47 +02:00
aignatov-bio 2de2ead723
Refactor avatar image appearance across Scinote [SCI-3482] (#1787) 
* Refactor avatar appearance across Scinote
 2019-05-21 15:19:44 +02:00
aignatov-bio 5081546c78
Fix padding for protocol description (#1782) 2019-05-21 10:21:30 +02:00
Oleksii Kriuchykhin 1128fedc51 Refactor title inline editing permission checking [SCI-3471] 2019-05-20 13:13:31 +02:00
Alex Kriuchykhin df59c54bd4
Merge pull request #1776 from okriuchykhin/ok_SCI_3477 
Fix protocol metadata editing in repository [SCI-3477]
 2019-05-17 09:42:13 +02:00
Oleksii Kriuchykhin 488fc99dae Fix protocol metadata editing in repository [SCI-3477] 2019-05-16 17:11:17 +02:00
Anton Ignatov dcb6162ded Fix merge error 2019-05-16 09:40:02 +02:00
Anton Ignatov 259b75a6ba Merge branch 'master' into features/marvinjs-integration 2019-05-16 09:28:48 +02:00
Alex Kriuchykhin bcbaf73669
Merge pull request #1773 from okriuchykhin/ok_SCI_3468 
Add permission checking to inline editor fields [SCI-3468]
 2019-05-15 17:49:15 +02:00
Oleksii Kriuchykhin 2ef926e795 Add permission checking to inline editor fields [SCI-3468] 2019-05-15 17:47:09 +02:00
Alex Kriuchykhin 607356ce1b
Merge pull request #1771 from okriuchykhin/ok_SCI_3466 
Show task due date in UTC [SCI-3466]
 2019-05-15 15:30:17 +02:00
Oleksii Kriuchykhin 71a4a1348a Show task due date in UTC [SCI-3466] 2019-05-15 15:17:44 +02:00
aignatov-bio 24e30867da
Add smart annotation to comments [SCI-3458] (#1768) 
* Add smart annotation to comments
 2019-05-15 14:59:15 +02:00
aignatov-bio f970eea525
Some gui fixes (#1757) 2019-05-14 09:43:02 +02:00