Commit graph

1231 commits

Author SHA1 Message Date
okriuchykhin
784a4723cc
Merge pull request #1056 from okriuchykhin/ok_SCI_2251
Update turbolinks and fix repository table init [SCI-2251]
2018-03-26 14:23:30 +02:00
Oleksii Kriuchykhin
07070df1b4 Fix users profile edit form [SCI-2251] 2018-03-26 13:47:12 +02:00
okriuchykhin
b1fcdb7474
Merge pull request #1057 from okriuchykhin/ok_SCI_2249
Fix sample assign permissions [SCI-2249]
2018-03-26 13:24:38 +02:00
Oleksii Kriuchykhin
e42fc3117b Implement search in file repository cells and improve performance [SCI-2111] 2018-03-26 13:19:09 +02:00
zmagod
8f09e1f7a4 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-03-26 13:08:31 +02:00
Zmago Devetak
2310439088
Merge pull request #1045 from ZmagoD/zd_SCI_2197
fixes import protocol bug for guest user [fixes SCI-2197]
2018-03-26 13:08:01 +02:00
mlorb
b7a14215bc
Merge pull request #1050 from mlorb/ml-sci-2120-v2
Refactor project navigation [SCI-2120]
2018-03-26 12:56:19 +02:00
mlorb
0092be08cc refactor links 2018-03-26 12:11:59 +02:00
zmagod
3efe06a410 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-03-26 12:02:24 +02:00
zmagod
9e1f285c9e adds missing labels [fixes SCI-2219] 2018-03-26 11:28:14 +02:00
mlorb
1797afa718
Merge branch 'ux-release-1' into ml-sci-2238 2018-03-26 10:44:43 +02:00
mlorb
70e0d8bd1d
Merge pull request #1052 from mlorb/ml-sci-2125
Implement new Help dropup in navigation [SCI-2125]
2018-03-26 09:22:39 +02:00
Oleksii Kriuchykhin
aa69624f9f Fix sample assign permissions [SCI-2249] 2018-03-25 20:10:32 +02:00
Oleksii Kriuchykhin
83c7539156 Update turbolinks and fix repository table init [SCI-2251] 2018-03-25 19:44:58 +02:00
mlorb
83741358d1 fix locales 2018-03-23 16:19:06 +01:00
zmagod
baf69461f5 adds edit/create modal and related actions 2018-03-23 16:00:33 +01:00
mlorb
eee597b315 fix naming 2018-03-23 15:56:38 +01:00
mlorb
2e81359ebb re-implement About sciNote modal 2018-03-23 15:14:49 +01:00
mlorb
5589b27883 improve message for deleting sample/report items 2018-03-23 14:39:09 +01:00
mlorb
faaecec2ff implement new Help dropup in navigation 2018-03-23 14:08:27 +01:00
mlorb
bc06542ed7 refactor project navigation 2018-03-22 11:41:33 +01:00
zmagod
3be3c00574 adds manage columns page [fixes SCI-2218] 2018-03-22 09:35:36 +01:00
Oleksii Kriuchykhin
36302ad6e8 Refactor existing columns management to control only Column visibility and order [SCI-2220] 2018-03-21 16:56:36 +01:00
zmagod
81df97f008 add library sidebar and create new library button [fixes SCI-2121] 2018-03-21 09:22:55 +01:00
zmagod
62858bc14f Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-03-20 14:46:11 +01:00
zmagod
1ad8c259d1 add blank page for repositories [fixes SCI-2139] 2018-03-20 14:45:57 +01:00
mlorb
35afc06cbd
Merge pull request #1038 from mlorb/ml-sci-2118
Code left-side menu bar [SCI-2118]
2018-03-20 14:40:55 +01:00
Zmago Devetak
75d7ace8c7
Merge pull request #1017 from ZmagoD/zd_SCI_2068
Write server-side endpoints for custom repositories [SCI-2068]
2018-03-20 14:30:47 +01:00
mlorb
884eef9d07 Merge remote-tracking branch 'upstream/ux-release-1' into ml-sci-2118 2018-03-20 14:25:59 +01:00
okriuchykhin
2356b78044
Merge pull request #1042 from okriuchykhin/ok_SCI_2201
Use larger LinkedIn sign-in button [SCI-2201]
2018-03-19 16:23:22 +01:00
zmagod
c46da5cc67 fixes import protocol bug for guest user [fixes SCI-2197] 2018-03-19 16:10:28 +01:00
Oleksii Kriuchykhin
acbd40e0d1 Remove Power Up button [SCI-2117] 2018-03-18 22:12:29 +01:00
Oleksii Kriuchykhin
a105e61d48 Remove tutorial [SCI-1860] 2018-03-18 13:18:05 +01:00
Oleksii Kriuchykhin
37f675b32a Use larger LinkedIn sign-in button [SCI-2201] 2018-03-18 12:18:33 +01:00
zmagod
3131ed0948 adds permission check to archived project actions dropdown [fixes SCI-2194] 2018-03-16 17:30:49 +01:00
zmagod
311b2dac5a Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2142 2018-03-16 16:21:47 +01:00
zmagod
86a8afd907 refactor 2018-03-16 15:56:12 +01:00
zmagod
ee03115361 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2095 2018-03-16 15:32:40 +01:00
zmagod
1cdba5e0d3 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2068 2018-03-16 11:05:16 +01:00
zmagod
d69754af04 implement search on list items dropdown, update, create actions [fixes SCI-2070] 2018-03-15 15:43:16 +01:00
mlorb
9fd845c478 fix failing cucumber tests 2018-03-14 17:55:04 +01:00
mlorb
9de998e85c code left-side menu bar 2018-03-14 14:33:34 +01:00
zmagod
a6a25bbe08 add floating alert message 2018-03-13 16:33:48 +01:00
Zmago Devetak
d7679dcb99
Merge pull request #1032 from ZmagoD/zd_SCI_2141
refactor global activities in separate page [fixes SCI-2141]
2018-03-13 15:20:14 +01:00
zmagod
dd2f7dd417 Merge branch 'master' of https://github.com/biosistemika/scinote-web into samples_to_repositories_table_migration 2018-03-13 13:24:36 +01:00
zmagod
51af74071c remove comments and activity modal 2018-03-13 10:52:53 +01:00
zmagod
8fe173e831 re-structure top navigation bar 2018-03-12 16:27:35 +01:00
zmagod
e218cae453 refactor global activities in separate page [fixes SCI-2141] 2018-03-12 11:01:23 +01:00
okriuchykhin
e0834a57cf
Merge pull request #1027 from okriuchykhin/ok_SCI_2163
Hide delete button for guest users in repository [SCI-2163]
2018-03-09 17:16:58 +01:00
Oleksii Kriuchykhin
cd9260f439 Hide delete button for guest users in repository [SCI-2163] 2018-03-09 16:19:36 +01:00
Oleksii Kriuchykhin
940469e41b Fix user management on project [SCI-2146] 2018-03-09 12:08:34 +01:00
okriuchykhin
160935cde0
Merge pull request #1022 from okriuchykhin/ok_SCI_2136
Fix manage repository permissions [SCI-2136]
2018-03-09 10:15:24 +01:00
zmagod
26883af386 fix assigned ordering 2018-03-08 17:36:10 +01:00
okriuchykhin
a306e65093
Merge pull request #1016 from okriuchykhin/ok_SCI_2130
Fix edit project's users modal [SCI-2130]
2018-03-07 14:04:26 +01:00
Oleksii Kriuchykhin
bd9f5c1cda Fix manage repository permissions [SCI-2136] 2018-03-07 13:41:57 +01:00
Oleksii Kriuchykhin
186780e68f Fix invite users link on task card [SCI-2055] 2018-03-06 17:56:01 +01:00
zmagod
fb66131e29 setup endpoint for repository_rows paging/search 2018-03-06 16:32:39 +01:00
Oleksii Kriuchykhin
ca66858063 Fix edit project's users modal [SCI-2130] 2018-03-06 15:49:30 +01:00
mz3944
bb21f6543c
Merge pull request #1004 from mz3944/mz-SCI-2011
Wrapping up the permissions [SCI-2011]
2018-03-06 07:10:40 +01:00
Matej Zrimšek
c5b0a6525b Some additional permission calls fixes, minor refactoring. 2018-03-06 06:56:35 +01:00
Zanz2
c5728c4018
Merge branch 'master' into null_step_crash_sci2043 2018-03-05 16:37:24 +01:00
mlorb
5e44859ce0
Merge pull request #1010 from mlorb/ml-sci-1826
Sign up with linkedIn account [SCI-1826]
2018-03-05 13:24:36 +01:00
Matej Zrimšek
53f75f3cd6 Minor permissions and their calls refactoring and fixing. 2018-03-04 14:49:41 +01:00
zmagod
2b55cd7090 rename variables 2018-03-02 14:14:27 +01:00
mlorb
f5949e9d10 refactor 2018-03-01 17:52:24 +01:00
Luka Murn
070450f813 Merge branch 'release-1.12.11'
Conflicts:
	config/initializers/extends.rb
2018-03-01 14:04:57 +01:00
mlorb
08439e7f58 sign up with linkedIn account 2018-02-28 18:12:21 +01:00
zmagod
e3ca782996 add info modal for repository items [fixes SCI-2066] 2018-02-27 16:21:46 +01:00
Oleksii Kriuchykhin
aa933ad1f4 Add extendable file types mappings for icons [PIP-46] 2018-02-26 14:23:02 +01:00
Matej Zrimšek
b8b9707c06 Fixed protocol and archive permission calls, fixed result permissions; module group managing is now also allowed on newly created groups; other permission call fixes and some refactoring. 2018-02-19 14:51:14 +01:00
Zanz2
5c93bd9676 Tables now have fixed 200 px height, which solves various issues and the scrollbar clipping to the bottom 2018-02-16 14:14:51 +01:00
Zanz2
673901fb01
Merge pull request #984 from Zanz2/yellow_flashv3_SCI1834
Fixed tables getting cut when certain attributes are at max length [SCI-1834]
2018-02-16 12:52:51 +01:00
Matej Zrimšek
6ba226d514 Added missing '?' to the canaid permission calls that were missing it. 2018-02-16 11:12:30 +01:00
Matej Zrimšek
5bda53eebf Overall refactoring of all canaid permissions and code related to their calls. 2018-02-16 10:54:06 +01:00
Matej Zrimšek
4fe669ca9a Removed permissions helper and updated the remaining calls to its methods with the new canaid gem permissions. 2018-02-16 10:53:22 +01:00
Zanz2
b9db39f87d removing last commit 2018-02-16 00:00:53 +01:00
Zanz2
95501eb046 saving work for later 2018-02-15 20:01:36 +01:00
Zanz2
ad8f93b57f
Merge pull request #991 from Zanz2/missplaced_authors_sci1808
protocols io authors are now real authors, not user that added the protocol [SCI-1808]
2018-02-15 16:53:39 +01:00
Zmago Devetak
0583979cf9
Merge pull request #993 from ZmagoD/zd_SCI_2039
fixes errors with form id duplicates [fixes SCI-2039]
2018-02-15 11:10:43 +01:00
Matej Zrimšek
09c5e23adf Fixed permission checks for completing step and checking step checkboxes. Disabled turbolinks for comments since it can cause issues. Minor code styling changes. 2018-02-14 14:39:10 +01:00
Matej Zrimšek
d571ab2ed8 Fixed comments permissions for experiment level. 2018-02-14 14:39:10 +01:00
Matej Zrimšek
6b1fee4d30 Added/joined repository record assignment to task with sample assignmment to task. 2018-02-14 14:39:10 +01:00
Matej Zrimšek
f21c794a95 Fixed permission error when accessing samples page. 2018-02-14 14:39:09 +01:00
Matej Zrimšek
68206cb591 Added missing checks for whether task/experiment/project is active for experiment level permissions. Minor code refactoring and restyling. 2018-02-14 14:39:08 +01:00
Matej Zrimšek
d55734e501 Added additional permission checks for moving tasks. Added forgotten enclosing tag in a view. 2018-02-14 14:39:07 +01:00
Matej Zrimšek
8ef6c8f91f Refactored remaining experiment level permissions (and everything below it). 2018-02-14 14:39:07 +01:00
Matej Zrimšek
0706d16020 Readded module level archive, move, clone and manag permissions. Corrected their usage and add the permissions check in some additional places. 2018-02-14 14:19:22 +01:00
Matej Zrimšek
7938c2e036 Minor code style changes. 2018-02-14 14:19:22 +01:00
Matej Zrimšek
d6e7ef465c Grouped remaining permissions for experiment, protocol, task, and partially step levels. [SCI-1964] 2018-02-14 14:19:22 +01:00
Matej Zrimšek
854333b0e6 Grouped permissions for experiment with canaid gem (WIP). 2018-02-14 14:19:00 +01:00
Matej Zrimšek
d058c371d4 Readded project archive permission. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
900446557b Fixed mistyped permission checker. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
e36ec69ca9 Project level permissions refactoring (mostly names). 2018-02-14 13:16:32 +01:00
Matej Zrimšek
93536afcd5 Renamed permission 'update_project' to 'manage_project'. Some permissions fixes; added them in some places where they were missing. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
13e9a2a132 Corrected some project level permissions; minor refactoring. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
e5799ee6dc Some permission fixes. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
d423700e84 Used permissions where they were missing. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
321ddc2916 Grouped existing project permissions and used 'canaid' gem. 2018-02-14 13:09:45 +01:00
zmagod
ace78cfb58 fixes errors with form id duplicates [fixes SCI-2039] 2018-02-09 14:54:16 +01:00
Zanz2
128f15f984
Merge pull request #990 from Zanz2/code_formatting_sci1822
Commands in protocols io steps are now properly formatted like code [SCI-1822]
2018-02-08 08:52:44 +01:00
Zanz2
49a4d9cf23 Tables now no longer have huge whitespace below them, it is now fixed 300 pixels and when its too big the table gets a scrollbar 2018-02-07 15:50:42 +01:00
Zanz2
60aa1a0953 Authors are now displayed as actual authors, not the person that added the protocol, and the created at date from protocols io is in protocol info, like it was before 2018-02-07 15:12:03 +01:00
Zanz2
a6356d2420 Fixed newline styling, now code is styled in newlines, and since \n doesnt work i change it to <br> with gsub and that allows code to be written into multiple lines 2018-02-07 14:46:25 +01:00
Zmago Devetak
b33d09536e
Merge pull request #987 from ZmagoD/zd_SCI_2033
fixes user dropdown [fixes SCI-2033]
2018-02-07 14:34:37 +01:00
Zanz2
efaf5ad721 Commands now get styled like code 2018-02-07 13:51:22 +01:00
Zanz2
367eff6401 re-pushing this, this got merged into master already but i accidentally deleted it when merging two branches 2018-02-07 11:17:53 +01:00
zmagod
695e9d90d2 fixes user dropdown [fixes SCI-2033] 2018-02-07 08:43:42 +01:00
Zmago Devetak
25a42658c8
Merge pull request #980 from ZmagoD/zd_SCI_2009
adds nil check in step_table_element for table name [fixes SCI-2009]
2018-02-06 15:44:56 +01:00
Zanz2
83e9550feb
Merge pull request #966 from Zanz2/images_not_imported_SCI1807
Images not imported [SCI-1807]
2018-02-06 14:33:35 +01:00
Zanz2
dac59cf4d0 Refactored to PR, deleted unrelated things 2018-02-06 09:06:33 +01:00
zmagod
ad742ac2d1 adds nil check in ste_table_element for table name [fixes SCI-2009] 2018-02-05 16:27:04 +01:00
zmagod
25dcfe66ae Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1960 2018-02-01 16:04:05 +01:00
okriuchykhin
def08a3faa
Merge pull request #971 from okriuchykhin/ok_SCI_1968
Update notification settings accessor names and update Rubocop config [SCI-1968]
2018-01-31 15:40:09 +01:00
zmagod
366b67ca1c fixes per @mojca 's request 2018-01-31 15:18:18 +01:00
zmagod
b1684dbd5b removed unneeded hook 2018-01-31 14:40:19 +01:00
zmagod
34f5076b04 fixes failin specs [fixes SCI-2001] 2018-01-31 12:05:45 +01:00
Oleksii Kriuchykhin
7a769bbfde Update notification settings accessor names and update Rubocop config [SCI-1968] 2018-01-29 16:15:12 +01:00
zmagod
029d69b033 revert to old setting [fixes SCI-1967] 2018-01-29 15:42:22 +01:00
Zanz2
70a972c264 Fixed pr and small oversight 2018-01-27 14:33:01 +01:00
Zanz2
2a287193b7 Merge branch 'images_not_imported_SCI1807' of https://github.com/Zanz2/scinote-web into images_fix 2018-01-27 13:50:35 +01:00
Zanz2
e8f6dc0d24
Merge pull request #962 from Zanz2/missing_error_SCI1993
A red error messagge is now displayed when not selecting protocol [SCI-1993]
2018-01-26 16:00:15 +01:00
Zanz2
1d4ce42f23 fixed according to PR 2018-01-26 15:29:13 +01:00
Zanz2
98b3ddbdb0
Merge branch 'master' into images_not_imported_SCI1807 2018-01-26 15:13:40 +01:00
Zanz2
020e9ddc16 Merge branch 'images_not_imported_SCI1807' of https://github.com/Zanz2/scinote-web into images_not_imported_SCI1807 2018-01-26 11:08:47 +01:00
Zanz2
6f56f829da Now protocols name from attached protocol is shortened based on title limit length (255 characters),also has same limitations as scinote title 2018-01-26 10:49:38 +01:00
Zanz2
fc541147c8 A red error messagge is now displayed when selecting no protocol and pressing upload on protocols io import, and after the modal is closed the messagge is gone 2018-01-25 15:54:38 +01:00
zanzdebian
8bd8c34c4d Fixed some styling bugs that happened after the merge, its using new function now, with old style, ( the old style turns the mouse cursor into a hand when it hovers over button) 2018-01-25 13:45:35 +01:00
Zmago Devetak
1e407bd9c5
removes unneeded classes 2018-01-25 11:00:48 +01:00
zmagod
76b08e6ac9 add permissions in views 2018-01-24 13:59:57 +01:00
Zanz2
00ac774fde Made images now display in protocol description, before_start, warning,guidelines, manuscript_citation, and also in Step description and step expected result 2018-01-24 13:40:13 +01:00
zmagod
f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
okriuchykhin
aef80f86b5
Merge pull request #934 from okriuchykhin/ok_SCI_1931
Fix protocol import button [SCI-1931]
2018-01-18 10:30:19 +01:00
okriuchykhin
8394055fba
Merge pull request #938 from okriuchykhin/ok_SCI_1875_v2
Remove Addons caption if no addons in info modal and fix linter packages
2018-01-17 15:33:43 +01:00
Zmago Devetak
26f7a94392
Merge pull request #943 from ZmagoD/zd_SCI_1866_v2
fixes first element both in Rails part an React part off the application
2018-01-17 14:12:52 +01:00
okriuchykhin
38aaaa011c
Merge pull request #936 from okriuchykhin/ok_SCI_1939
Fix repository records import [SCI-1939]
2018-01-17 12:55:11 +01:00
okriuchykhin
1692bdade7
Merge pull request #941 from okriuchykhin/ok_SCI_1945
Fix repository item export [SCI-1945]
2018-01-17 12:50:22 +01:00
zmagod
0922ee21a7 fixes first element in global activities logs[fixes SCI-1866] 2018-01-17 12:01:58 +01:00
Oleksii Kriuchykhin
86853e8fc1 Fix repository item export [SCI-1945] 2018-01-17 10:39:01 +01:00
zmagod
a931a1bc15 adds first date to _list.html.erb view 2018-01-16 14:03:22 +01:00
Oleksii Kriuchykhin
b59815c611 Remove Addons caption if no addons in info modal and fix linter packages [SCI-1875] 2018-01-16 11:11:50 +01:00
Oleksii Kriuchykhin
a64012237e Fix repository records import [SCI-1939] 2018-01-15 18:01:35 +01:00
Oleksii Kriuchykhin
79e1eaf145 Fix export samples button [SCI-1936] 2018-01-15 13:54:08 +01:00
Oleksii Kriuchykhin
deabd39a98 Fix protocol import button [SCI-1931] 2018-01-15 13:43:09 +01:00
Zanz2
b105920d4e
Merge pull request #901 from Zanz2/code_refactor
Protocols.io code beautification and refactoring [SCI-1929]
2018-01-12 12:34:00 +01:00
Zanz2
3c6d37ce64 Fixed according to PR review 2018-01-11 18:37:36 +01:00
Zmago Devetak
0e6931b1f3
Merge pull request #908 from ZmagoD/zd_SCI_1866
Wrong date at activity
2018-01-08 14:20:26 +01:00
zmagod
eb8124ea5a follow @duco 's suggestions 2018-01-05 17:08:00 +01:00
mlorb
e76ec7f4a4
Merge pull request #911 from mlorb/ml-sci-1797
Permissions - refactor organization & team level permissions (core) [SCI-1797]
2018-01-05 16:03:55 +01:00
mlorb
efb4ce289c fix and/or use 2018-01-05 15:52:41 +01:00
mlorb
99185871c4 fix naming things 2018-01-05 15:15:50 +01:00