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581 commits

Author SHA1 Message Date
zmagod
836baa7412 fixes bug with user teams table [fixes SCI-987] 2017-02-15 10:06:21 +01:00
Luka Murn
d097f0dd15 Merge pull request #477 from Ducz0r/lm-sci-928 
Refactor, merge, unify, improve, update, beautify settings page [SCI-928]
 2017-02-13 16:42:57 +01:00
Luka Murn
1b6f50647c Please Hound 2017-02-13 16:40:27 +01:00
Oleksii Kriuchykhin
f97c20e9b5 Fix hound warnings [SCI-999] 2017-02-13 15:42:28 +01:00
Oleksii Kriuchykhin
78d5cbb223 Add links to task completion notification [SCI-999] 2017-02-13 14:51:21 +01:00
Oleksii Kriuchykhin
cf8566df33 Add task complete/uncomplete functionality [SCI-999] 2017-02-10 14:27:20 +01:00
Luka Murn
3eb4faa44b Fix task restore action 
Closes SCI-991.
 2017-02-10 14:08:56 +01:00
Luka Murn
280b7a0e75 Minor fix 2017-02-09 15:10:45 +01:00
Luka Murn
2a9f975c13 Some minor fixes 2017-02-09 14:58:11 +01:00
Luka Murn
f7bd62547e Refactor teams settings into its own controllers 2017-02-09 14:37:59 +01:00
Luka Murn
5cb3eb5e09 Refactor preferences -> move them to subcontroller, subroute 2017-02-09 11:07:16 +01:00
okriuchykhin
c2a69982aa Merge pull request #471 from okriuchykhin/ok_SCI_936 
Adds datatable to all teams page [SCI-936]
 2017-02-07 10:33:33 +01:00
Oleksii Kriuchykhin
cc6b518c7f Check that user is a member of a team when switching to it [SCI-984] 2017-02-03 16:10:37 +01:00
Oleksii Kriuchykhin
db90c5d63b Add datatable to all teams page [SCI-936] 2017-02-02 09:53:59 +01:00
Oleksii Kriuchykhin
031741d122 Disable protocols link if user has no teams [SCI-934] 2017-02-01 14:26:51 +01:00
Oleksii Kriuchykhin
c119b7c014 Make sciNote work for users without any teams [SCI_934] 2017-02-01 14:16:26 +01:00
Zmago Devetak
5c9954bb89 Merge pull request #450 from ZmagoD/zd_SCI_939 
Refactor "organizations" to "teams"
 2017-02-01 13:12:02 +01:00
zmagod
be5faad97c fixes hound 2017-01-31 13:33:55 +01:00
Oleksii Kriuchykhin
d1e69438de Add config option to enable/disable users registration [SCI-935] 2017-01-30 15:04:02 +01:00
zmagod
e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
Mojca Lorber
5bed5f0f4a fix bug with avatar in smart annotations 2017-01-26 17:15:00 +01:00
Oleksii Kriuchykhin
310d8c1920 Refactor smart annotation/auto_link/simple_format rendering [SCI-940] 2017-01-25 17:18:19 +01:00
zmagod
c2c5616078 rename Organization to Team in controllers 2017-01-24 17:06:51 +01:00
Oleksii Kriuchykhin
fe6d6842c2 Add sanitization of group/type to sample edit [SCI-902] 2017-01-24 16:58:03 +01:00
zmagod
21c2f82582 rename controllers where org/organization 2017-01-24 16:57:14 +01:00
Oleksii Kriuchykhin
a04f05eeb3 Add sanitization to sample groups/types [SCI-902] 2017-01-24 14:39:54 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
Oleksii Kriuchykhin
d555ba7905 Add export to protocol management page and code style improvements [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin
14a6705b55 Implemented protocol export through Zip::OutputStream [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin
1abd7fc574 Added xml schemas and zip gem [SCI-742] 2017-01-23 17:34:02 +01:00
Mojca Lorber
44de927cf4 display smart annotations in reports - without rich text fields 2017-01-19 14:22:54 +01:00
Mojca Lorber
b3c423c582 add table name in protocol step 2017-01-18 14:22:18 +01:00
Luka Murn
cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
okriuchykhin
02bfd19d1c Merge pull request #385 from okriuchykhin/ok_SCI_102 
Fix XSS on activites and throghout the rest of app [SCI-102]
 2017-01-16 11:41:38 +01:00
Luka Murn
a0e9e5afa8 Merge pull request #402 from mz3944/mz-sci-848-v2 
Unable to delete samples [SCI-848]
 2017-01-16 10:47:13 +01:00
zmagod
1b2fa78e42 adds user preview to user smart annotation [fixes SCI-832] 2017-01-13 11:34:10 +01:00
Oleksii Kriuchykhin
f567d0307e Fix includes [SCI-102] 2017-01-12 17:02:01 +01:00
Luka Murn
8b01f912a0 Fix new year problems with activities 
Closes SCI-876.
 2017-01-12 14:47:15 +01:00
Matej Zrimšek
93a8e0bdae Fixes sample deletion when coming from experiment page and having modules attached. [SCI-848] 2017-01-12 14:08:29 +01:00
Oleksii Kriuchykhin
d05c16b0ba Added auto_link wrapper with custom sanitization [SCI-102] 2017-01-11 17:02:17 +01:00
Oleksii Kriuchykhin
0546716a0b Improve user input sanitization, fix bugs [SCI-102] 2017-01-11 15:50:11 +01:00
zmagod
3a1ec0eb5e refactor [fixes SCI-834] [fixes SCI-837] [fixes SCI-823] [fixes SCI-835] [fixes SCI-836] [fixes SCI-824] 2017-01-11 14:56:47 +01:00
zmagod
fc76a4ae6d Merge branch 'smart-annotations' of https://github.com/biosistemika/scinote-web into zd_SCI_834 2017-01-10 14:22:04 +01:00
zmagod
6efcf49927 working version of dropdown filter 2017-01-10 14:14:21 +01:00
zmagod
53d20df449 added xregexp 2017-01-10 14:14:21 +01:00
zmagod
94262b56ef prepare data for atwho 2017-01-10 14:14:21 +01:00
Luka Murn
5873eea994 We serve to please the Hound 2017-01-10 10:42:52 +01:00
mz3944
ef431da2db Merge pull request #389 from mz3944/mz-sci-848 
Unable to delete samples [SCI-848]
 2017-01-09 11:57:48 +01:00
okriuchykhin
3c47d17019 Merge pull request #386 from okriuchykhin/ok_SCI_815 
Improve error message when importing CSV files with incorrect character encoding [SCI-815]
 2017-01-09 11:54:28 +01:00
zmagod
226d5d8247 added blank string to wopi-lock header param 2017-01-09 11:51:18 +01:00
Oleksii Kriuchykhin
89710d8782 Enable image preview for newly uploaded images [SCI-694] 2017-01-06 16:41:24 +01:00
Oleksii Kriuchykhin
aa2b573278 Enable image preview while editing steps and code style improvements [SCI-694] 2017-01-06 15:58:23 +01:00
Matej Zrimšek
ec7a1cb4c0 Replaced remaining related hard-coded names with constants and generalized delete samples name fetching. Minor refactoring. [SCI-848] 2017-01-06 14:23:20 +01:00
Matej Zrimšek
5d104981fd Fixed sample deletion on experiments level. Minor refactoring. [SCI-848] 2017-01-06 14:23:20 +01:00
Luka Murn
3cdd375a2d Merge pull request #388 from biosistemika/hotfix-1.6.1 
Hotfix 1.6.1
 2017-01-06 11:23:16 +01:00
Oleksii Kriuchykhin
cba064dfcc Improve error message whan importing CSV files with incorrect character encoding [SCI-815] 2017-01-05 17:00:21 +01:00
Luka Murn
ef688feb4e Hotfix 1.6.1 
Set confirmed_at to created_at when using no
email confirmations and users sign up by themselves.
 2017-01-05 15:27:18 +01:00
Oleksii Kriuchykhin
835e982292 SAnitize AJAX calls in controllers and datatables [SCI-102] 2017-01-05 13:12:22 +01:00
Oleksii Kriuchykhin
cd3924afd3 Sanitize .html_safe marked strings which contain tags [SCI-102] 2017-01-05 13:04:19 +01:00
Luka Murn
a78bb79618 Temp commit 2017-01-05 12:07:17 +01:00
mlorb
59751ec41e Merge pull request #373 from mlorb/ml_sci_709 
Add Protocol Preview to Protocol repository [SCI-709]
 2017-01-04 11:28:55 +01:00
Luka Murn
3bee9d2e12 Save an (yet unworking) version of user smart annotations 
Used so other devs can start working on smart annotations.
 2017-01-04 10:54:02 +01:00
Luka Murn
cedc6c5074 Merge pull request #382 from Ducz0r/lm-sci-166-fix 
Re-add tags index controller action to render tags [SCI-166]
 2017-01-04 10:48:09 +01:00
Luka Murn
6402acc102 Merge pull request #377 from Ducz0r/lm-sci-820-fix 
Fix 2 bugs with comments editing [SCI-820]
 2017-01-04 10:47:29 +01:00
zmagod
87ffa7f03b fixes X-WOPI-ServerVersion bug 2017-01-04 10:02:08 +01:00
zmagod
a434649f42 Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-01-03 16:35:25 +01:00
Mojca Lorber
c476faca30 fix hound 2017-01-03 11:04:09 +01:00
Mojca Lorber
e555535dfb add edit button to protocol preview modal 2017-01-03 10:04:14 +01:00
Luka Murn
af9e272b2a Re-add tags index controller action to render tags 
Closes SCI-166.
 2017-01-03 09:39:41 +01:00
Zmago Devetak
5d0e80a5e1 Merge pull request #369 from ZmagoD/zd_SCI_812 
fixes bug with samples sorting [fixes SCI-812]
 2017-01-03 08:56:59 +01:00
okriuchykhin
cce57d066c Merge pull request #370 from okriuchykhin/ok_SCI_817 
Fix issue with long samples column names in import modal [SCI-817]
 2016-12-30 15:29:32 +01:00
okriuchykhin
e8955b0304 Merge pull request #375 from okriuchykhin/ok_SCI_361 
Add sorting to Project's experiments overview [SCI-361]
 2016-12-30 15:28:53 +01:00
Oleksii Kriuchykhin
d798f1b120 Fix XSS vulnerability in protocol keywords [SCI-632] 2016-12-29 15:15:29 +01:00
Luka Murn
b931b20f02 Fix 2 bugs with comments editing 
Closes SCI-820.
 2016-12-23 20:41:23 +01:00
Oleksii Kriuchykhin
4d3e002c81 Add sorting to Project's experiments overview [SCI-361] 2016-12-23 15:40:01 +01:00
Mojca Lorber
40e3240a99 add content to preview modal 2016-12-22 11:43:11 +01:00
zmagod
e554fdf805 code refactor 2016-12-21 16:52:15 +01:00
Oleksii Kriuchykhin
53ea09c3de Fix issue with long samples column names in import modal [SCI-817] 2016-12-21 14:34:53 +01:00
zmagod
e2723a288c fixes bug with samples sorting [fixes SCI-812] 2016-12-21 14:32:28 +01:00
Oleksii Kriuchykhin
00ea3a027c Fix generation of preview url for new steps and results [SCI-694] 2016-12-20 16:10:53 +01:00
Oleksii Kriuchykhin
cbef971d85 Fix timeouts when fetching images from S3 [SCI-694] 2016-12-20 15:36:07 +01:00
Oleksii Kriuchykhin
d2b76d8385 Improved image preview modal [SCI-694] 2016-12-19 17:36:18 +01:00
Zmago Devetak
c8631077df Merge pull request #361 from biosistemika/improved-sample-table 
Improved sample table
 2016-12-16 15:37:54 +01:00
zmagod
6d2fb3b02c Merge branch 'improved-sample-table' of https://github.com/biosistemika/scinote-web into zd_SCI_790 2016-12-14 17:05:00 +01:00
okriuchykhin
c4ff12be51 Merge pull request #349 from okriuchykhin/ok_SCI_783 
Fix columns ordering when deleting custom fields [SCI-783]
 2016-12-14 16:19:20 +01:00
Oleksii Kriuchykhin
de8eed0a19 Fix hound warning [SCI-783] 2016-12-14 15:27:24 +01:00
Oleksii Kriuchykhin
fa1cf1f04d Better handling of columns deleting with fixing columns ordering [SCI-783] 2016-12-14 15:23:00 +01:00
zmagod
3c1a275510 fixes invited user samples table [fixes SCI-790] 2016-12-13 10:56:13 +01:00
Mojca Lorber
2cfcba0ceb add protocol preview modal 2016-12-13 10:39:18 +01:00
zmagod
4b0e2baa3f fixes breadcrumbs in secondary nav 2016-12-12 16:03:14 +01:00
zmagod
8dd8a7e7cd Merge branch 'improved-sample-table' of https://github.com/biosistemika/scinote-web into zd_improved_samples_table_SCI_774_775_778_777 2016-12-12 15:52:25 +01:00
zmagod
8bb452e4f7 trim long names [fixes SCI-774] adds secondary navigation and sidebar [fixes SCI-775] 2016-12-12 10:30:03 +01:00
zmagod
de3099e4d1 removes asset_helper, fixes loading of processed thumbnails in results and steps and when loading protocols from repository 2016-12-09 13:59:49 +01:00
Luka Murn
1a8b141b95 Add delete custom field functionality 2016-12-09 13:49:19 +01:00
Luka Murn
754c90b612 Edit functionality now works 2016-12-09 13:18:59 +01:00
Mojca Lorber
0e3526c9ad Merge branch 'mlorb-ml-sci-696' into improved-sample-table 
Conflicts:
	app/assets/javascripts/samples/sample_datatable.js
 2016-12-08 15:44:50 +01:00
zmagod
40fdfef67f setup delayed_paperclip gem 2016-12-08 15:24:14 +01:00
zmagod
ac52e643be cleanup direct upload 2016-12-08 11:26:13 +01:00
okriuchykhin
cb2abfa7a9 Merge pull request #325 from okriuchykhin/ok_SCI_712 
Added form for adding new columns to samples table into dropdown [SCI-712]
 2016-12-06 15:00:01 +01:00
Oleksii Kriuchykhin
f6dd64772a Add columns to samples table without page reload [SCI-712] 2016-12-06 13:22:26 +01:00
Oleksii Kriuchykhin
22dabd2177 Added form for adding new columns to samples table into dropdown [SCI-712] 2016-12-06 13:17:05 +01:00
Mojca Lorber
849f78b4df implement reordering of columns in the samples table and change from local to database storage 2016-12-05 11:34:36 +01:00
zmagod
7725374c42 refactor sample types/groups [fixes SCI-700] 2016-12-02 09:58:35 +01:00
zmagod
83aae59eed adds sample groups index page 2016-12-02 09:33:09 +01:00
Luka Murn
372b455d7d Merge pull request #332 from Ducz0r/lm-sci-750-751 
Fix inviting users not working
 2016-12-01 15:52:40 +01:00
Luka Murn
6a770f6a7e Fix inviting users not working 
Closes SCI-750, SCI-751.

Probably reopens parts of SCI-746.
 2016-12-01 15:46:37 +01:00
Matej Zrimšek
3bdaa4bcef Some token authentication refactoring and error handilng fixes. [closes SCI-689] 2016-12-01 15:38:56 +01:00
Matej Zrimšek
46465060d0 Added automatic sign in with token authentication, needed when signing in from different webpage. [closes SCI-689] 2016-11-30 16:56:56 +01:00
Nejc Bernot
cb03ed8384 Users can now have multiple tokens 
A new token is generated whenever an edit or view file is called. Tokens have a TTL of one day.
Also enabled the toggling of both wopi and wopi test mode, using environmental variables.
 2016-11-30 16:48:42 +01:00
Luka Murn
76ec77fce4 Merge pull request #329 from biosistemika/simplify-signup 
Merge simplify-signup into master
 2016-11-30 09:41:20 +01:00
zmagod
4e4a48620c adds validation to input fields 2016-11-29 18:08:29 +01:00
zmagod
12848f15fa adds sample_type index view with all crud actions 2016-11-29 17:15:54 +01:00
Luka Murn
b5d0a39827 Fix some recaptcha form submit errors for signup pages 
Closes SCI-746.
 2016-11-29 15:53:58 +01:00
zmagod
5c0b2d7b24 init sample_types page 2016-11-29 08:57:12 +01:00
okriuchykhin
f9c8223fe5 Merge pull request #321 from okriuchykhin/ok_SCI_736 
Improve regexp for image whitelisting [SCI-736]
 2016-11-28 15:46:54 +01:00
Oleksii Kriuchykhin
cc0aab2e59 Improve regexp for image whitelisting [SCI-736] 2016-11-28 10:08:54 +01:00
okriuchykhin
31f6379866 Merge pull request #318 from okriuchykhin/ok_SCI_736 
Add whitelisting of supported image types [SCI-736]
 2016-11-28 09:32:49 +01:00
okriuchykhin
5981d1a48e Merge pull request #316 from okriuchykhin/ok_SCI_738 
Add full name field to accept invitation form [SCI-738]
 2016-11-25 16:15:23 +01:00
Oleksii Kriuchykhin
74f6455a8f Add whitelisting of supported image types [SCI-736] 2016-11-25 16:12:43 +01:00
Oleksii Kriuchykhin
3fdb20b92c Add full name field to accept invitation form [SCI-738] 2016-11-25 11:15:10 +01:00
Luka Murn
87d3280847 Refactor registrations_controller code slightly 2016-11-25 09:56:07 +01:00
Oleksii Kriuchykhin
698e07a3b5 Enable reCaptcha and auto log in on confirm invitation form [SCI-706] 2016-11-24 14:11:02 +01:00
Luka Murn
198febfd94 Fix user projects not working 2016-11-23 13:19:10 +01:00
Luka Murn
fba646bfba Fix Hound errors 2016-11-22 15:19:12 +01:00
Luka Murn
7cbe44d1f2 Refactor user projects & user my modules code 2016-11-22 15:16:26 +01:00
Luka Murn
201b1a48d5 Refactor user my modules code 2016-11-22 15:07:18 +01:00
Luka Murn
e0607f7891 Refactor step comments code 2016-11-22 15:01:48 +01:00
Luka Murn
0c96036de8 Refactor some sample types code 2016-11-22 14:59:57 +01:00
Mojca Lorber
60f23b109b integrate reCaptcha into sciNote 2016-11-22 14:57:41 +01:00
Luka Murn
8ff5285179 Refactor some sample groups code 2016-11-22 14:57:01 +01:00
Luka Murn
f5e286b1f6 Remove unused code for some more comments 2016-11-22 14:52:43 +01:00
Luka Murn
1f7a8712fb Update task comments & task tags controllers & localized Strings 
(Remove a lot of unused code)
 2016-11-22 14:26:35 +01:00
Luka Murn
59eb1c1d18 Remove unused new, edit user_projects views 2016-11-19 17:01:10 +01:00
Luka Murn
911b7ba72f Remove unused new user_my_module view 2016-11-19 16:59:24 +01:00
Luka Murn
6999105e51 Remove tags 2016-11-19 16:57:08 +01:00
Luka Murn
008b31df0c Finish removing new comment forms 2016-11-19 16:54:55 +01:00
Luka Murn
595b213b1a Changes up to samples in views folder 2016-11-19 16:51:40 +01:00
Luka Murn
3be30c0e7a Re-introduce fix for SCI-650 that was lost during merge 
Closes SCI-650.
 2016-11-18 10:57:03 +01:00
Luka Murn
26d04b1f3c Merge branch 'rich-text-formatting' into 'master' 
Conflicts:
	Gemfile.lock
	app/assets/stylesheets/themes/scinote.scss
 2016-11-17 16:39:33 +01:00
Luka Murn
9d3685f872 Merge branch 'gamification' into 'master' 
Conflicts:
	app/controllers/users/invitations_controller.rb
	app/controllers/users/settings_controller.rb
 2016-11-17 16:30:18 +01:00
Luka Murn
04749c3b2c Allow inviting of existing, unconfirmed users 
Closes SCI-676.
 2016-11-15 15:04:31 +01:00
Luka Murn
861e7cf72d Update invited user form so it works if user inputs empty team name 
Closes SCI-650
 2016-11-11 17:27:32 +01:00
Luka Murn
564274a588 Set invited_by field to invited users 2016-11-10 14:45:24 +01:00
Mojca Lorber
d2ae11f1af fix hound 2016-11-10 14:16:54 +01:00
Mojca Lorber
3e162b3a93 remove redcarpet gem - markdown 2016-11-10 14:11:32 +01:00
mlorb
0793fb9f11 Merge pull request #260 from mlorb/ml_sci_614 
Add notification for removing user from team and removing user from project [SCI-614]
 2016-11-08 11:30:49 +01:00
Mojca Lorber
27c83992b4 refactoring notification method 2016-11-07 15:31:06 +01:00
Luka Murn
ce7733e9e9 Also add notification when UserOrganization is created 2016-11-07 09:47:30 +01:00
Luka Murn
0ab62576a2 Add new modal to organization page, remove old modal code 2016-11-07 09:43:10 +01:00
Luka Murn
6fe0d6b3df A working invite modal! 2016-11-07 09:43:10 +01:00
Luka Murn
ccf8932611 Add first version of invite users modal 2016-11-07 09:43:09 +01:00
Oleksii Kriuchykhin
fe6724431e Futher improvement of samples assign/unassign logging [SCI-605] 2016-11-07 09:29:56 +01:00
Oleksii Kriuchykhin
a1bfacef86 Improved samples assign/unassign logging [SCI-605] 2016-11-03 17:59:32 +01:00
Oleksii Kriuchykhin
3d25da5db7 Fixed bug with protocol loading from file [SCI-605] 2016-11-03 14:15:22 +01:00
Mojca Lorber
749b108928 fix hound 2016-11-02 13:32:15 +01:00
Mojca Lorber
a2213e23b3 add notification for removing user from team and removing user from project 2016-11-02 11:52:41 +01:00
Oleksii Kriuchykhin
e8d20dfc01 Added additional activities [SCI-605] 2016-11-02 10:43:36 +01:00
Luka Murn
eec6b1403d Merge pull request #247 from Ducz0r/lm-hotfix-blank-current-org 
Add check in application controller to always set current org if nil
 2016-10-25 11:53:05 +02:00
Zmago Devetak
266d1415d0 Merge pull request #246 from ZmagoD/zd_SCI_599 
fixes error when removing user from team [SCI-599]
 2016-10-25 11:52:44 +02:00
Luka Murn
7885fd0f39 Add check in application controller to always set current org if nil 2016-10-25 11:39:57 +02:00
zmagod
6a328969f0 reset current_user if the user leaves the team [fixes SCI-599] 2016-10-25 09:53:02 +02:00
zmagod
24b81c96f6 sets current_organization_id if no current_organization is available for current_user, hides separator if only one team present [fixes SCI-608] 2016-10-24 21:20:41 +02:00
zmagod
e02132578a first run 2016-10-24 20:07:20 +02:00
Zmago Devetak
4f5b7ad8ad Merge pull request #228 from ZmagoD/zd_SCI_585 
Removes archived projects from index page [fixes SCI-585]
 2016-10-21 11:33:01 +02:00
Oleksii Kriuchykhin
5be7904f5a Fix hound warnings [SCI-557] 2016-10-21 09:37:24 +02:00
zmagod
db806f3c10 hide private projects 2016-10-21 09:06:19 +02:00
Oleksii Kriuchykhin
0c1ff06f21 Fixes issue with new comments and date separator SCI-557 2016-10-20 22:33:15 +02:00
zmagod
4c086a6fc1 removes archived projects from index page [fixes SCI-585] 2016-10-20 13:13:44 +02:00
zmagod
557957c857 fixed issue with mozilla browsers 2016-10-17 15:21:19 +02:00
zmagod
1614cbc2b2 fixes repeat tutorial button and localization typos 2016-10-17 15:16:22 +02:00
zmagod
931cba2666 fixes hound [fixes SCI-512] 2016-10-17 15:10:26 +02:00
zmagod
fa36488397 fixed new project form 2016-10-17 15:10:26 +02:00
zmagod
8f24d0d80c fixed new user registration 2016-10-17 15:10:26 +02:00
zmagod
3117a464f0 fixed controllers 2016-10-17 15:10:26 +02:00
zmagod
bb9c03df24 fixes controllers 2016-10-17 15:10:26 +02:00
zmagod
d7f514db09 fixes search 2016-10-17 15:10:26 +02:00
zmagod
efe031d766 setup current_organization in all controllers 2016-10-17 15:10:26 +02:00
zmagod
d86a4dd311 setup global team switch view and controller action 2016-10-17 15:10:26 +02:00
Matej Zrimšek
a6a2a237aa Removed unneeded ERB tags, which caused error. Minor refactoring. 2016-10-17 11:57:47 +02:00
Matej Zrimšek
ece89da391 Removed ruby constants duplicates in JS, because of caching problems. 2016-10-17 11:57:47 +02:00
Matej Zrimšek
5966911b92 Fixed Hound alerts. 2016-10-17 11:57:46 +02:00
Matej Zrimšek
0780bd2416 Ruby constants are now automatically available in JS. Refactoring was needed. 2016-10-17 11:57:37 +02:00
Matej Zrimšek
a3dfb59558 Added remaining constants. 2016-10-17 11:30:05 +02:00
Matej Zrimšek
21ec05d541 Refactored searches (user and globals earch) and used constants. 2016-10-17 11:17:59 +02:00
Luka Murn
bdaeb4db13 Add notification mailer preview 2016-10-13 08:56:04 +02:00
mlorb
78f7879c04 Merge pull request #216 from mlorb/ml_sci_555 
Adding update notifications in settings [SCI-555]
 2016-10-13 08:53:55 +02:00
Mojca Lorber
42f6b679f8 Adding system notifications email function in settings 2016-10-12 11:50:26 +02:00
Luka Murn
cccabcdd7b Remove invitation_to_organization email 
This email is no longer needed, because if user enables
assignment notifications, he/she will already receive an
email whenever he/she is added to a new organization/team (via
notifications email).
 2016-10-12 10:54:36 +02:00
Oleksii Kriuchykhin
5399033fce Added user settings for email notifications [SCI-443] 2016-10-11 16:43:17 +02:00
Jure Grabnar
1f67aec258 Prevent destroying protocols when file is edited 
SCI-552 #close
 2016-10-06 16:13:42 +02:00
Jure Grabnar
b52e596209 Update protocol timestamp on put_file 
SCI-551 #close
 2016-10-06 14:37:42 +02:00
Oleksii Kriuchykhin
c783e9a03d Code fix after rebase with latest master [SCI-442] 2016-10-05 15:51:11 +02:00
Oleksii Kriuchykhin
868ffd03d6 JS code improvement [SCI-442] 2016-10-05 15:51:11 +02:00
Oleksii Kriuchykhin
246dae4f46 Code style improvements according to hound [SCI-442] 2016-10-05 15:51:11 +02:00
Oleksii Kriuchykhin
8907e54b49 Global notifications index page added [SCI-442] 2016-10-05 15:51:11 +02:00
Oleksii Kriuchykhin
8b5b0723d1 Initial code commit 2016-10-05 15:51:11 +02:00
zmagod
9c7a690944 fixed type, fixed settings controller, fixes setting view on mobile devices 2016-10-05 14:33:22 +02:00
Jure Grabnar
85d2370d28 Change some values to string in CheckFileInfo 2016-10-04 18:19:36 +02:00
Jure Grabnar
3e74c96085 Add wd* params to iframe action url 2016-10-04 18:00:08 +02:00
zmagod
a68e7abc57 first run notification settings 2016-10-04 15:52:48 +02:00
Luka Murn
61cb9651c7 Merge pull request #188 from biosistemika/global-notifications 
Global notifications
 2016-10-04 08:30:50 +02:00
zmagod
c9bbab1004 added html_safe to outputed message, hide notifications number when dropdown is toggled, clear all unseen notification form count when the dropdown is toggled, generate notification only to other users 2016-10-03 20:31:00 +02:00
Jure Grabnar
72c5824e67 Remove navbar for viewing WOPI files 2016-10-03 20:02:13 +02:00
Jure Grabnar
ec82f64df2 Add WOPI breadcrumbs 2016-10-03 19:45:39 +02:00
Jure Grabnar
1949b1fe88 Add CloseUrl to WOPI 2016-10-03 18:25:01 +02:00
Jure Grabnar
03567d6208 Prevent archive of locked result asset 2016-10-03 17:07:57 +02:00
mlorb
153b692c0c Merge pull request #181 from mlorb/ml_sci_321 
Displaying more information for individual samples in Sample table [SCI-321]
 2016-10-03 16:37:35 +02:00
zmagod
0d23f05698 Merge branch 'global-notifications' of https://github.com/biosistemika/scinote-web into zd_SCI_440 2016-10-03 16:14:22 +02:00
Jure Grabnar
f727289935 Add lock check for editing result 2016-10-03 13:43:35 +02:00
zmagod
947096862d fixed hound 2016-10-03 11:40:59 +02:00
zmagod
ea17182372 generate notifications [fixes SCI-440] 2016-10-03 11:37:29 +02:00
zmagod
2ee02ec472 mark all seen notifications 2016-10-03 08:20:23 +02:00
Jure Grabnar
1e14955ade Prevent deleting asset on step update 2016-10-01 18:47:05 +02:00
Jure Grabnar
d9fa882d6a Add check for locked files on step delete 2016-10-01 14:51:55 +02:00
Jure Grabnar
a2d6d9a29a Add WOPI controlls to result 2016-10-01 11:23:32 +02:00
Jure Grabnar
ff47f29dc2 Add wopi file activity 
SCI-393 #close
 2016-09-29 16:16:42 +02:00
zmagod
e1a1b93d44 fixed migrations 2016-09-29 14:49:58 +02:00
Jure Grabnar
ed8df3cc62 Add favicon url to iframe 2016-09-29 12:19:29 +02:00
Jure Grabnar
bc22697ebe Take/release space in putfile 2016-09-28 18:02:47 +02:00
Jure Grabnar
5e5f4c5ed4 Add text extraction on unlock 2016-09-28 17:36:53 +02:00
Jure Grabnar
02ddd64aaa Set last_modified_by on put_file 2016-09-28 17:00:19 +02:00
zmagod
cab1e9b521 start implement toolbar view 2016-09-28 16:03:52 +02:00
Jure Grabnar
e96e8486ea Add check file permissions to assets controller 
SCI-502 #close
 2016-09-28 09:33:44 +02:00
Jure Grabnar
25c9ec67b3 Check permissions in wopi_controller 2016-09-28 09:33:44 +02:00
Jure Grabnar
5aea0fbb19 Refactor the rest of WOPI logic from Nejc 2016-09-28 09:33:44 +02:00
Jure Grabnar
c1ae4360a3 Refactor WopiController 2016-09-28 09:33:44 +02:00
Jure Grabnar
0c9292e4fc Catch GET_SHARE_URL post file action 2016-09-28 09:33:44 +02:00
Jure Grabnar
3600fbfe64 Fix UnlockUnlockedFile action 
The time was nigh!
 2016-09-28 09:33:44 +02:00
Jure Grabnar
674326e761 Add timestamp WOPI checking 
Change status error code to 500.
 2016-09-28 09:33:44 +02:00
Jure Grabnar
b51f2a3027 Add basic WOPI proof checking 
Still missing validation of timestamp.
Remove web_console gem for testing.
Add relevant tests from manual for WOPI proof.
 2016-09-28 09:33:44 +02:00
Nejc Bernot
1b260785ec First working version of office integration 
Only works on scinote-preview
 2016-09-28 09:33:44 +02:00
Nejc Bernot
b2b1d5a8f5 Initial commit of WOPI integration 2016-09-28 09:33:44 +02:00
zmagod
dad0d3868b fixing hound 2016-09-27 17:31:37 +02:00
zmagod
2235778110 fixed project and task comments + fixed date issue 2016-09-27 16:19:31 +02:00
Mojca Lorber
c2b742374f adding popup sample info 2016-09-23 17:45:02 +02:00
Matej Zrimšek
13e886f7a9 Removed unneeded upper case for errors which had them, along with their refactoring. [fixes SCI-408] 2016-09-22 17:35:23 +02:00
Matej Zrimšek
234918a76d Word wrapping and truncating added to whole application [fixes SCI-458]. Fixed some bugs which were related to long/too long text and validations. Modified parts of application to accomodate for longer text limits. 2016-09-21 19:48:18 +02:00
Zmago Devetak
5fedcb4be2 Merge pull request #160 from ZmagoD/zd_SCI_464 
Fixes restore experiment error [fixes SCI-464]
 2016-09-21 19:24:33 +02:00
zmagod
06b1992e94 Merge branch 'zd_SCI_436' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_436 2016-09-21 19:20:55 +02:00
zmagod
8a8bf10f08 clean up flash label 2016-09-21 19:09:57 +02:00
zmagod
bf8e2a208f fixes restore experiment error [fixes SCI-464] 2016-09-21 08:34:32 +02:00
zmagod
42bbc47f5f first working version 2016-09-20 17:06:07 +02:00
zmagod
da86208441 styled step comments 2016-09-20 14:13:40 +02:00
zmagod
0ca65aeca5 fixed step comment sorting 2016-09-20 13:31:50 +02:00
Matej Zrimšek
c2f0106993 Replaced hardcoded values with unified constants. Minor refactoring. Also front-end error handling was updated accordingly. [fixes SCI-408] 2016-09-16 15:56:44 +02:00
Zmago Devetak
431227c0a4 Merge pull request #147 from maslick/resultCommentsError1000Chars 
Fixed: Comments in results have no error message if the text exceeds 1000 characters
 2016-09-16 09:38:38 +02:00
Matej Zrimšek
76ff34a8a9 URL presigning is now used only when using S3 file uploading (caused error for local uploading) [fixes SCI-447], along with some refactoring. 2016-09-13 18:56:47 +02:00
zmagod
7c363d5ade fixed security issue 2016-09-13 13:57:31 +02:00
zmagod
3d5a42cc27 refactor results controller 2016-09-13 13:26:04 +02:00
zmagod
222ddf7438 fixed houd error 2016-09-13 13:26:04 +02:00