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612 commits

Author SHA1 Message Date
aignatov-bio a08d93376c
Add promo modal when MarvinJS disabled (#1872) 2019-07-01 11:51:13 +02:00
aignatov-bio 2793777463
Features/docx report (#1873) 
* Initial setup for docx report

* Add render for project, experiment, my_module

* Implement converter for RTE fields

* Add all report elements

* fix markup

* Change headers, remove empty blocks, refactored repository draw

* Add smart annotations support

* Fix justify fields

* Prepare for addons integration

* Fix markup

* Add comments to GemFile

* Fix TinyMCE error

* Change UI for new report download selector

* Fix file error in inventory cell for docx

* Fix i18n object for header
 2019-07-01 10:14:16 +02:00
Anton Ignatov 6be227b2d3 Merge branch 'master' of https://github.com/biosistemika/scinote-web into features/marvinjs-integration 2019-06-28 10:47:38 +02:00
Anton Ignatov 8240c8baad Initial refactoring for remote api support 2019-06-22 01:51:59 +02:00
Anton Ignatov 7e5c39d3e4 Merge branch 'master' into features/marvinjs-integration 2019-06-21 14:51:45 +02:00
Anton Ignatov bc98cac9cc Trunc long protocol name on task page 2019-06-20 15:28:15 +02:00
Alex Kriuchykhin db7c6435b3
Merge pull request #1851 from okriuchykhin/ok_SCI_3436 
Implement saving of attachments ordering on steps [SCI-3436]
 2019-06-20 11:31:15 +02:00
aignatov-bio 9653f16196
Convert image to base64 in PDF reports [SCI-3557] (#1835) 
* Convert image to base64 in PDF reports

* Fix typo error
 2019-06-19 13:57:04 +02:00
aignatov-bio 7a3eedf461
Adding missing avatars to comments (#1838) 2019-06-14 16:20:13 +02:00
Oleksii Kriuchykhin 6e1a7a3392 Implement saving of attachments ordering on steps [SCI-3436] 2019-06-11 10:08:33 +02:00
aignatov-bio d207cf5dce
Refactored comments over SciNote [SCI-3505] (#1808) 
* Preparing helpers for comments

* Refactored comments over scinote

* Update events
 2019-06-04 14:40:21 +02:00
Anton Ignatov c9a29b12ba Merge branch 'master' into features/marvinjs-integration 2019-05-31 10:27:14 +02:00
aignatov-bio 2de2ead723
Refactor avatar image appearance across Scinote [SCI-3482] (#1787) 
* Refactor avatar appearance across Scinote
 2019-05-21 15:19:44 +02:00
Oleksii Kriuchykhin 882c12cd31 Remove protocol description from preview popup [SCI-3485] 2019-05-20 15:04:54 +02:00
Anton Ignatov 259b75a6ba Merge branch 'master' into features/marvinjs-integration 2019-05-16 09:28:48 +02:00
Miha Mencin 5ff344c208
Merge pull request #1746 from biosistemika/lm-sci-3426 
Changes to create new office file button [SCI-3426]
 2019-05-13 10:55:58 +02:00
aignatov-bio d3aa6371cd
Fix report saving [SCI-3443] (#1753) 
* Fix report saving

* Fix the report saving by using the reports' structures

* Remove uneccesary yarn.lock (mistake)
 2019-05-13 10:55:08 +02:00
aignatov-bio 364f903b3c
Fix protocol preview name (#1749) 2019-05-13 10:17:47 +02:00
aignatov-bio 0b194eb3b1
Revert "Fix report saving (#1748)" (#1752) 
This reverts commit 3db6129808.
 2019-05-13 09:09:36 +02:00
aignatov-bio 3db6129808
Fix report saving (#1748) 2019-05-13 08:58:47 +02:00
Luka Murn b78caef915 Fix the file preview modal so it supports WOPI_ENABLED == false 2019-05-10 16:41:11 +02:00
Anton Ignatov f80d881847 Fix markup 2019-04-28 19:11:41 +02:00
Anton Ignatov 2847ec7609 Add env variable and check for MarvinJS available 2019-04-28 17:08:18 +02:00
Anton Ignatov 46f0e0c0c2 Add marvin js assets to assets sort and name field 2019-04-27 12:46:45 +02:00
Urban Rotnik c41413234c Use MS office icons for MS files 2019-04-26 09:29:39 +02:00
Urban Rotnik 11a7a975af Merge branch 'features/scinote-improvements' into master-with-note-section 2019-04-23 14:50:03 +02:00
Urban Rotnik b1dabaca15 New helper for file thumbnails 2019-04-23 13:50:48 +02:00
Anton Ignatov aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
mlorb 1e3d0e901a
Merge pull request #1667 from mlorb/ml-sci-3304 
Fix links in activity message for protocols in repository [SCI-3304]
 2019-04-15 11:55:08 +02:00
Anton Ignatov dd8b3caf65 Fix duplicate activtiy issue and fix link to inventory 2019-04-15 11:35:30 +02:00
Mojca Lorber 252fdaf9a8 Fix links in activity message for protocols in repository 2019-04-12 15:14:41 +02:00
Urban Rotnik ee3dc571e1 Update attachments view, add ordering on FE 2019-04-09 14:17:40 +02:00
Anton Ignatov 811f07a62c Update API endpoints for new activities 2019-04-08 15:07:45 +02:00
Jure Grabnar b12916b828 Add main functionality 2019-04-04 17:05:25 +02:00
Oleksii Kriuchykhin d6bd703ec8 Fix activity genereation with discarded inventories [SCI-3290] 2019-04-03 21:18:48 +02:00
Oleksii Kriuchykhin 8c2b2513b0 Fix user popup in global activities [SCI-3285] 2019-04-03 12:53:52 +02:00
Urban Rotnik 86ddbc68b6 fixup! Show date actual value without link 2019-04-02 14:21:06 +02:00
Urban Rotnik 8eaeeee9f8 Show date actual value without link 2019-04-02 13:15:34 +02:00
Urban Rotnik 73dd6678ee Fix for show date value 2019-04-02 10:36:11 +02:00
Urban Rotnik dc0c629798 Fix to show report name in Activities 2019-04-01 15:58:28 +02:00
Urban Rotnik 0ed96d68de Add step position for steps in Protocol repository. Add default value for blank names also. 2019-04-01 15:58:17 +02:00
Alex Kriuchykhin b3aa6be23d
Merge pull request #1621 from okriuchykhin/ok_SCI_3255 
Add global activities to reports [SCI-3255]
 2019-04-01 15:07:06 +02:00
Jure Grabnar e165459ef5
Merge pull request #1574 from jbargu/jg_sci_3149_3163 
Valid smart annotation links of smart annotation imported within protocol [SCI-3149, 3163]
 2019-04-01 14:32:54 +02:00
Oleksii Kriuchykhin 98e58ff7eb Add global activities to reports [SCI-3255] 2019-04-01 11:26:51 +02:00
Urban Rotnik 03dcc91cf1 Fix showing result icon when result is deleted 2019-04-01 09:58:13 +02:00
Oleksii Kriuchykhin 5008339d81 Add handling of links for objects from another team [SCI-3229][SCI-3241] 2019-03-28 14:56:34 +01:00
Oleksii Kriuchykhin d7d45bec70 Fix links for archived objects in global activities [SCI-3229] 2019-03-28 13:43:50 +01:00
Miha Mencin 8e12e0f5b3 [SCI-3236] showing font-awesome icon based on result type 2019-03-26 17:04:31 +01:00
Miha Mencin 4a87216a3d
Merge branch 'master' into features/global-activities 2019-03-25 14:35:24 +01:00
Anton Ignatov bc58f0aecd Merge branch 'features/note-section' into ai-sci-3131-improve-image-file-upload 2019-03-21 11:48:51 +01:00
Anton Ignatov 07c2819163 refactoring tinymce image uploading 2019-03-20 14:46:54 +01:00
Jure Grabnar 5de51f9c58 Prevent smart annotations accessing other teams when importing protocol 
Closes SCI-3163
 2019-03-20 12:58:22 +01:00
Mojca Lorber 4f9814b884 Merge branch 'features/global-activities' of github.com:biosistemika/scinote-web into ml-sci-3021 2019-03-20 11:03:00 +01:00
Oleksii Kriuchykhin b46f3566ef Fix rendering of HTML in RTE fields [SCI-3111] 2019-03-19 23:32:24 +01:00
Mojca Lorber d1e38e5bc9 Project activities refactoring 2019-03-19 15:33:57 +01:00
Urban Rotnik fe35c805b7 Add model breadcrumbs, update activities_helper 2019-03-19 14:01:06 +01:00
Oleksii Kriuchykhin a822227383 Add rich text editor to task and protocol description [SCI-3062][SCI-3071] 2019-03-14 16:27:33 +01:00
Oleksii Kriuchykhin ded74044de Fix circle icon in image editor [SCI-2855] 2019-03-11 15:10:38 +01:00
Oleksii Kriuchykhin 0930277c4e Add views and helpers for global activities individual cards [SCI-2994][SCI-3024] 2019-02-27 16:02:53 +01:00
mz3944 f6c8af105d
Merge pull request #1434 from mz3944/mz-SCI-2903 
Fix (unite) Date and Time display formats [SCI-2903]
 2019-01-21 09:50:34 +01:00
Matej Zrimšek 838455af0d Fix protocols.io Date handling at import 2019-01-12 19:28:45 +01:00
Alex Kriuchykhin be514fd62d
Merge pull request #1445 from okriuchykhin/ok_SCI_2931 
Fix image URLs in export all document [SCI-2931]
 2019-01-11 12:03:06 +01:00
Oleksii Kriuchykhin ec28db6f4f Fix image URLs in export all document [SCI-2931] 2019-01-10 14:19:40 +01:00
Oleksii Kriuchykhin 2769add4d9 Disable edit button for unsupported WOPI formats [SCI-2904] 2018-12-31 18:10:12 +01:00
Matej Zrimšek b74105abc2 Fix Date and Time display formats 2018-12-23 20:30:09 +01:00
Alex Kriuchykhin ab0924c8e6
Merge pull request #1415 from okriuchykhin/ok_SCI_2864 
Use built-in methods for Postgres extensions enabling [SCI-2864]
 2018-12-16 19:45:56 +01:00
Oleksii Kriuchykhin 7cd1c12a4f Use built-in methods for Postgres extensions enabling [SCI-2864] 2018-12-10 14:14:49 +01:00
Oleksii Kriuchykhin 60a19734b2 Enable caching for navigation sidebar [SCI-2757] 2018-11-29 11:28:36 +01:00
Alex Kriuchykhin 20e2cbf0ca
Merge pull request #1391 from okriuchykhin/ok_SCI_2880 
Fix smart annotations rendering issues [SCI-2880]
 2018-11-28 09:47:20 +01:00
Oleksii Kriuchykhin d67abfda2c Additional fixies for smart annotations [SCI-2880] 2018-11-26 15:17:18 +01:00
Jure Grabnar 6ec2c99a28 Hound styling 2018-11-26 13:52:01 +01:00
Jure Grabnar 0086e4dcf3 Catch some of templates error when import protocols.io 2018-11-26 13:43:05 +01:00
Jure Grabnar c7d108ec16 Update according to Hound 
Closes [SCI-2790]
 2018-11-23 20:52:07 +01:00
Jure Grabnar 2834edb286 Add command/subprotocol/safety for PIO 2018-11-23 20:13:34 +01:00
Jure Grabnar c00b08b101 Add sw_package and dataset component for PIO 2018-11-23 19:44:10 +01:00
Jure Grabnar 5ab2556632 Importing of protocols now works 2018-11-23 18:54:37 +01:00
Jure Grabnar 2c8a7f8eca Add last_modified evaluation for PIO import 2018-11-23 17:51:47 +01:00
Jure Grabnar 87d5e5029a Fix publish_date in PIO import 2018-11-23 17:37:26 +01:00
Jure Grabnar 76c2da4bae Add uniq tables 2018-11-23 16:30:29 +01:00
Oleksii Kriuchykhin 537de596a7 Merge latest master [SCI-2778] 2018-11-14 13:05:57 +01:00
Luka Murn 84df2c81f9 Merge branch 'features/export-all' 
Conflicts:
	app/controllers/experiments_controller.rb
	app/controllers/my_modules_controller.rb
	db/schema.rb
 2018-11-13 09:14:02 +01:00
Oleksii Kriuchykhin 8d0dbc7076 Add time format selection to settings [SCI-2778] 2018-11-09 16:19:40 +01:00
Oleksii Kriuchykhin 81d751974d Fix helpers to use with export all [SCI-2793] 2018-10-22 14:32:10 +02:00
Matej Zrimšek 46da1e6b7d Fix handling relative URLs in export all PDF after rebase; minor refactoring [SCI-2641] 2018-10-15 07:13:41 +02:00
Matej Zrimšek 9fb5520970 Refactor/match exported filenames in export all PDF [SCI-2641] 2018-10-15 05:54:19 +02:00
Matej Zrimšek 17380ba0ca Refactoring rebased code [SCI-2641] 2018-10-15 01:12:25 +02:00
Matej Zrimšek 67d51a8880 Refactor ReportsHelper#render_report_element 2018-10-12 07:40:22 +02:00
Matej Zrimšek aa30cf6130 Refactor StringUtility#to_filesystems_compatible_filename [SCI-2641] 2018-10-12 07:40:22 +02:00
Matej Zrimšek 1575da6edb Make filenames and folder names in export all PDF compatible with filesystems (improved function should be used from another PR) [SCI-2641] 2018-10-12 07:40:22 +02:00
Matej Zrimšek d970576d60 Switch between generating report PDF and export all PDF [SCI-2641] 2018-10-12 07:40:21 +02:00
Matej Zrimšek c0dc4f6951 Add hyperlinks to inventories' *.csv files in export all PDF [SCI-2641] 2018-10-12 07:40:21 +02:00
Matej Zrimšek ed6dfc90b0 Also shorten too long folder names, fix filename shortening [SCI-2641] 2018-10-12 07:40:21 +02:00
Matej Zrimšek 7152d2f0f1 Fix/update file naming convection for exported files [SCI-2641] 2018-10-12 07:40:21 +02:00
Matej Zrimšek 6f77c4772c Minor fix for assets & tables naming in export all PDF 2018-10-12 07:40:21 +02:00
Matej Zrimšek 0ebce8e283 Add relative links (not working) to files and tables into the PDF [SCI-2641] 2018-10-12 07:40:21 +02:00
Zanz2 b26530a02f Found a new, and more elegant fix inside controller with Luka 2018-08-28 14:48:23 +02:00
Oleksii Kriuchykhin 6669beaf0e Change icons throughout the rest of application [SCI-2445] 2018-07-27 15:27:08 +02:00
Zmago Devetak 5a1615825d
removes unneeded comment 2018-07-11 09:29:10 +02:00
zmagod 8fe1977ca8 adds skip_user_status parameter to popover_for_user_name function in order to keep the functionality more extendable [fixes SCI-1334] 2018-07-10 15:34:07 +02:00
Oleksii Kriuchykhin c0232d9eb2 Add extend for task child elements in reports [SCI-2377] 2018-06-19 14:34:36 +02:00
mlorb 0a8bfdb860 Reposition the arrow for opening/closing of Navigation 2018-06-01 13:18:49 +02:00
Luka Murn b3ae1d8fa6 Remove some dead code, make sidebar toggle animated 2018-05-27 16:24:47 +02:00
mlorb c4ecfc4d38 Change icons throughout sciNote - navigation, project, task cards 2018-05-22 16:55:58 +02:00
mlorb 81392362ac Final button colour changes 2018-05-18 16:24:24 +02:00
zmagod b125863baf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2371 2018-05-17 11:25:33 +02:00
zmagod ca0c8cbb71 fixes typos, fixes pdf rendering 2018-05-17 11:21:34 +02:00
zmagod 87369ae16b fixes ajax error in repositories [fixes SCI-2399] 2018-05-16 15:08:50 +02:00
mlorb 7df40e56c7 UI/UX restyle - fixes throughout application part one 2018-05-08 16:33:42 +02:00
Zmago Devetak a6275062b7
Merge pull request #1126 from ZmagoD/zd_SCI_2344 
adds new string truncation method [fixes SCI-2344]
 2018-05-07 16:30:12 +02:00
zmagod 0b721d86b1 adds new string truncation method [fixes SCI-2344] 2018-05-03 14:24:23 +02:00
mlorb 88d5ba369d
Merge branch 'ux-release-1' into ml-sci-2244 2018-04-26 14:07:03 +02:00
Luka Murn cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
mlorb 9e11f3b220 update buttons positions and wording throughout app 2018-04-25 13:57:12 +02:00
Luka Murn caab0cf55c Update the ordering upon table load 2018-04-20 12:31:22 +02:00
mlorb d7eccac289
Merge pull request #1099 from mlorb/ml-sci-2167 
Remove breadcrumbs throughout application [SCI-2167]
 2018-04-19 16:11:37 +02:00
mlorb c149b3cc2a refactoring 2018-04-19 15:12:26 +02:00
Zmago Devetak 540dff25e7
Merge pull request #1091 from ZmagoD/zd_SCI_2254 
adds correct preview images to files [fixes SCI-2254]
 2018-04-19 14:04:24 +02:00
zmagod 0adc06b1a1 adds edit repository item permission to normal user [fixes SCI-2297] 2018-04-13 13:11:29 +02:00
zmagod 9812a9f160 adds correct preview images to files [fixes SCI-2254] 2018-04-13 09:43:14 +02:00
zmagod b4deb232c0 rename variable: not_in_repository => display_image_tag 2018-04-12 13:40:17 +02:00
zmagod 233e73c709 adds asset preview link to repository row modal and to table row item [fixes SCI-2110] 2018-04-10 17:06:53 +02:00
Zmago Devetak eca69cfc75
Merge pull request #1080 from ZmagoD/zd_SCI_2076 
add asset field preview/sort/search in repository table [fixes SCI-2076]
 2018-04-09 14:29:45 +02:00
zmagod b51ad84ee5 add asset field preview/sort/search in repository table [fixes SCI-2076] 2018-04-06 12:03:39 +02:00
Zmago Devetak 71531ebf12
refactor 2018-04-05 16:46:09 +02:00
zmagod c0cc6c293a fixes tiny_mce pdf report in filesystem storage mode [fixes SCI-2279] 2018-04-05 13:15:32 +02:00
zmagod a8a19df06d Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-05 08:51:58 +02:00
okriuchykhin e608d629c7
Merge pull request #1068 from okriuchykhin/ok_SCI_2217 
Refactor file preview modal [SCI-2217]
 2018-04-05 00:18:43 +02:00
zmagod 525a1c15ca fixes hound 2018-04-04 16:40:07 +02:00
zmagod 0c05c60ebf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-04 16:06:38 +02:00
Zmago Devetak d1f3a65279
Merge pull request #1073 from ZmagoD/zd_SCI_2206 
add ID column to repository [fixes SCI-2206]
 2018-04-04 15:39:59 +02:00
Oleksii Kriuchykhin 3b7977ee3b Merge latest changes from ux-release-1 [SCI-2217] 2018-04-04 14:20:34 +02:00
zmagod e630d3113f add ID column to repository [fixes SCI-2206] 2018-04-04 11:55:11 +02:00
Oleksii Kriuchykhin cc5d8550b1 Refactor file preview modal [SCI-2217] 2018-03-30 11:50:28 +02:00
zmagod 56b0900619 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-03-29 16:42:10 +02:00
zmagod 659a088058 refactor smart annotation parser, adds repository item to smart annotation parser [fixes SCI-2222] 2018-03-29 15:55:26 +02:00
zmagod baf69461f5 adds edit/create modal and related actions 2018-03-23 16:00:33 +01:00
mlorb 9aa87a17e5 remove help helper 2018-03-23 14:26:53 +01:00
mlorb 35afc06cbd
Merge pull request #1038 from mlorb/ml-sci-2118 
Code left-side menu bar [SCI-2118]
 2018-03-20 14:40:55 +01:00
mlorb e0926ddc3c code refactoring 2018-03-20 13:53:11 +01:00
zmagod 1cdba5e0d3 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2068 2018-03-16 11:05:16 +01:00
mlorb 9de998e85c code left-side menu bar 2018-03-14 14:33:34 +01:00
Zanz2 bf34d82791 refactored to PR 2018-03-13 17:42:26 +01:00
Zanz2 97c01c386b pushing fix 2018-03-10 22:48:25 +01:00
zmagod 0baa7a1f99 fix hound 2018-03-09 14:43:12 +01:00
zmagod 26883af386 fix assigned ordering 2018-03-08 17:36:10 +01:00
Oleksii Kriuchykhin 156a639e4c Remove extra permission checks from WOPI buttons [SCI-2134][SCI-2133] 2018-03-06 17:36:40 +01:00
zmagod fb66131e29 setup endpoint for repository_rows paging/search 2018-03-06 16:32:39 +01:00
mz3944 bb21f6543c
Merge pull request #1004 from mz3944/mz-SCI-2011 
Wrapping up the permissions [SCI-2011]
 2018-03-06 07:10:40 +01:00
Zanz2 8f5dd3df38
Merge pull request #1003 from Zanz2/table_missing_scrollbar_sci1818 
Table missing scrollbar [SCI-1818]
 2018-03-05 17:13:06 +01:00
Zanz2 1e6f1acef5 fixed according to pr 2018-03-05 17:02:37 +01:00