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4861 commits

Author SHA1 Message Date
Anton Ignatov ffd415d409 Inital refactor for Assets model 2019-07-12 15:02:06 +02:00
Anton Ignatov 7831b0a089 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 15:00:07 +02:00
Oleksii Kriuchykhin 6166a0dbb0 Fix file result update method [SCI-3695] 2019-07-12 14:42:04 +02:00
Mojca Lorber d07e04e511 Fix dooble flash_alerts load 2019-07-12 14:33:41 +02:00
aignatov-bio 4bae87e3f7
Styling changes in DOCX report [SCI-3633] (#1899) 
* Styling changes in DOCX report

* Update result comments in docx report

* Fix markup
 2019-07-12 13:48:14 +02:00
aignatov-bio 5ca822a7d8
Add archive lables and fix bright colors in RTE fields (#1923) 2019-07-12 11:38:48 +02:00
Anton Ignatov 57a273d5d0 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 11:34:41 +02:00
aignatov-bio c6152ccddb
Fix big table issue in ProtocolIo preview (#1927) 2019-07-12 11:17:51 +02:00
aignatov-bio d8d04b89cd
Fix autosave issue in mozzila (#1925) 2019-07-12 11:15:45 +02:00
aignatov-bio 26ef970a1e
Add academy button (#1924) 2019-07-12 11:15:34 +02:00
aignatov-bio 70589126c3
Fix autosave for steps (#1926) 2019-07-12 10:16:49 +02:00
Urban Rotnik d5fbe5ecd7 Fix for safari on external protocols tab 2019-07-11 11:53:49 +02:00
Mojca Lorber f8afc92606 Fix page redirect and add success flash msg after protocols.io import action 2019-07-11 09:50:39 +02:00
aignatov-bio ac7970209c
Add helper for inline JS code (#1916) 2019-07-11 09:31:30 +02:00
Jure Grabnar 5eb197127f Fix relative links in protocolsio iframe 
Closes SCI-3660
 2019-07-10 19:20:40 +02:00
Oleksii Kriuchykhin 64b7a5646a Implement custom document file previewer [SCI-3677] 2019-07-10 14:37:23 +02:00
aignatov-bio 7ac410e573
Fix visual bugs across ProtocolIo [SCI-3671] (#1914) 
* Fix visual bugs across ProtocolIo
 2019-07-10 13:00:32 +02:00
Urban Rotnik b9bec32316 Add tests for StepComponents 2019-07-10 12:48:08 +02:00
Urban Rotnik 0ee2afae29
Merge pull request #1913 from urbanrotnik/ur-sci-3657-log-errors 
Log to console when error occur on ProtocolsImport actions [SCI-3657]
 2019-07-10 09:01:01 +02:00
Urban Rotnik cc3cd43270 Log to console when error occur on ProtocolsImport actions 2019-07-09 15:32:43 +02:00
mlorb 23270393b0
Merge branch 'master' into ml-sci-3634 2019-07-09 14:38:00 +02:00
Mojca Lorber 7bb82e2fc2 Fix eternal protocols tab visuals 2019-07-09 14:35:40 +02:00
aignatov-bio 1a75a31647
Remove webinar button [SCI-3664] (#1906) 
* Remove webinar button

* Remove constants and i18n
 2019-07-09 14:01:09 +02:00
aignatov-bio fc78d8f401
Fix tooltip position (#1909) 2019-07-09 14:00:53 +02:00
Urban Rotnik 10639deb97 Strip tags for table's content 2019-07-09 13:41:52 +02:00
Urban Rotnik be77746aef Fix description styling of components 2019-07-09 13:41:51 +02:00
Urban Rotnik 8411e92fa2 Add linebreak for 'There was a table' message 2019-07-09 10:54:48 +02:00
Oleksii Kriuchykhin a1941a21dc Futher refactoring of old Paperclip methods [SCI-3539] 2019-07-09 10:28:15 +02:00
Jure Grabnar 05f2210002
SCI-3650, SCI-3655 Fix empty file name, empty description when… (#1892) 
SCI-3650, SCI-3655 Fix empty file name, empty description when parsing tables
 2019-07-09 10:24:03 +02:00
aignatov-bio c8b0d87054
Fix global links in reports (#1894) 2019-07-09 09:35:43 +02:00
aignatov-bio 4fe3119bd2
Fix step description RTE images in report preview (#1888) 2019-07-08 15:23:44 +02:00
mlorb 7272d838b6
Merge pull request #1875 from mlorb/ml-sci-3618 
Remove unassign_user_from_project notification…[SCI-3618]
 2019-07-08 15:23:06 +02:00
aignatov-bio 01a01157d3
Replace Handson table in reports with simple table [SCI-3636] (#1895) 
* Replace handsone table in reports with simple table

* Add result tables
 2019-07-08 13:19:12 +02:00
Jure Grabnar bdd1ca2a65
Merge pull request #1908 from jbargu/jg_sci_3587 
[SCI-3587] Endless spinner at file preview
 2019-07-08 13:06:39 +02:00
Jure Grabnar ae7da78bff
Merge pull request #1897 from jbargu/jg_sci_3646 
[SCI-3646] Add paging functionality to external protocols
 2019-07-08 13:06:19 +02:00
aignatov-bio 81aef81634
Fix scrol jump when select activtiies in global activities (#1907) 2019-07-08 12:55:35 +02:00
aignatov-bio 6d423ed986
Make Navbar icons bigger [SCI-3663] (#1900) 
* Make Navbar icons bigger
 2019-07-08 12:53:43 +02:00
aignatov-bio 2baca019eb
Remove tooltip from step edit button (#1905) 2019-07-08 12:52:03 +02:00
aignatov-bio 99b1075c28
Fix protcol naming when load multiple protocols (#1904) 2019-07-08 12:51:47 +02:00
aignatov-bio 0d1ec0d4ed
Fix I18n and constants in DOCX report (#1901) 2019-07-08 12:51:26 +02:00
Miha Mencin ab9b7a7429
Merge pull request #1902 from biosistemika/release-1.16.6 
Merge 'release-1.16.6' into 'master'
 2019-07-08 12:49:40 +02:00
Jure Grabnar 0ee0b1c834 Fix file preview not showing in modal when processing is done 
Close SCI-3587
 2019-07-08 12:45:22 +02:00
Alex Kriuchykhin 82708f0124
Merge pull request #1891 from okriuchykhin/ok_SCI_3654 
Fix project page view saving [SCI-3654]
 2019-07-08 11:46:54 +02:00
Oleksii Kriuchykhin 9d926dc956 Refactor TinyMce assets, user avatars, zip files [SCI-3539] 2019-07-05 16:56:05 +02:00
Mojca Lorber 989c10872c Fixes visual bugs on protocols.io and home page 2019-07-04 18:22:51 +02:00
aignatov-bio 88dc2dcdd0
Hot fix for TinyMCE asset permission check (#1896) 
* Hot fix for TimyMCE asset permission check
 2019-07-04 15:59:11 +02:00
Jure Grabnar 0eb09407bc Always scroll to top when searching for new string 2019-07-04 15:38:15 +02:00
Jure Grabnar dc7fee51fa Add Show more protocols functionality to external protocols 
Closes SCI-3646
 2019-07-04 15:35:18 +02:00
Jure Grabnar 4c3df5a67d Change tabs to spaces 2019-07-04 09:43:05 +02:00
Oleksii Kriuchykhin c0c8e0e1a3 Refactor Experiment workflow images [SCI-3539] 2019-07-04 09:33:12 +02:00
Jure Grabnar 20134c9f8a
Features/protocolsio integration (#1893) 
Features/protocolsio integration
 2019-07-03 17:32:20 +02:00
Jure Grabnar 721bb9ab77
SCI-3649 All reagent data from step are not imported (#1881) 
SCI-3649 All reagent data from step are not imported
 2019-07-03 16:54:25 +02:00
Jure Grabnar 6944045bfb Check for empty description before passing to Nokogiri 
Closes SCI-3655
 2019-07-03 16:36:26 +02:00
Jure Grabnar 8866d98512 Fix empty file name on protocols.io 
Closes SCI-3650
 2019-07-03 16:11:51 +02:00
aignatov-bio 09dacf3be2
Fix infinite update for image annotation (#1889) 2019-07-03 15:35:49 +02:00
aignatov-bio d147e8260d
Fix issue with moving protocol in repository (#1887) 2019-07-03 15:35:37 +02:00
Oleksii Kriuchykhin e16cb513e1 Fix project page view saving [SCI-3654] 2019-07-03 15:34:16 +02:00
Miha Mencin 5a437c0a0f coding style fixes 2019-07-03 15:32:55 +02:00
Miha Mencin 964e91e1d2 removi mol weight from general section 2019-07-03 15:16:47 +02:00
Jure Grabnar e965866d57
SCI-3648 Error at importing one protocol without steps (#1883) 
SCI-3648 Error at importing one protocol without steps
 2019-07-03 14:43:49 +02:00
Miha Mencin 669592f62c
Merge pull request #1886 from biosistemika/SCI-3640-fix-safari-search-bar 
SCI-3640 Search line on Safari external protocols page needs update
 2019-07-03 14:18:02 +02:00
Miha Mencin 012b828708 additional filters for blank string when displaying the reagent details 2019-07-03 14:13:55 +02:00
Miha Mencin 1b31f7f30a SCI-3640 set max width of search bar to 50% 2019-07-03 13:16:07 +02:00
Miha Mencin 882e453b9c
Merge pull request #1880 from biosistemika/SCI-3644-hide-import-button 
SCI-3644 Import button is always visible
 2019-07-03 11:50:10 +02:00
Oleksii Kriuchykhin 028e647f4d Upgrade to Rails 5.2.3 [SCI-3651] 2019-07-03 11:15:13 +02:00
Alex Kriuchykhin 48a9db4390
Merge pull request #1882 from jbargu/jg_sci_3590 
Update js-yaml by upgrading rails/webpacker [SCI-3590]
 2019-07-03 11:07:06 +02:00
Miha Mencin 37cc526ac9 fix CR comments 2019-07-03 10:22:59 +02:00
Jure Grabnar 4715e8ec4b Fix building of zero steps protocls 
Close SCI-3648
 2019-07-03 09:34:15 +02:00
Miha Mencin 611c417b43 code review changes 2019-07-03 09:21:41 +02:00
aignatov-bio d2849c88fd
Remove draft after save step (#1878) 2019-07-03 09:18:52 +02:00
aignatov-bio 65cf5e5787
Fix activities menu selector highlight (#1877) 2019-07-03 09:18:41 +02:00
Miha Mencin ab038ffdf7 SCI-3649 adding catalog number, fixing up the design a bit 2019-07-02 19:47:05 +02:00
Miha Mencin 74b4e0d774 SCI-3644 hide the import button and show it only on hover & when appropriate user 2019-07-02 18:24:07 +02:00
Jure Grabnar fc961b570c Comment out index.jsx 
Closes SCI-3590
 2019-07-02 18:07:12 +02:00
Miha Mencin 4efb0b5a4a SCI-3645 added descending sorting by name 2019-07-02 17:42:55 +02:00
aignatov-bio b1a74a893c
Remove strange symbol (#1874) 2019-07-02 11:21:14 +02:00
aignatov-bio 378e91b426
Fix links on search page (#1867) 2019-07-02 11:21:00 +02:00
aignatov-bio 68ebf13bca
Fix tags modal issue (#1856) 2019-07-02 11:20:49 +02:00
Oleksii Kriuchykhin 4ea6b56582 Fix Step and Result file previews [SCI-3539] 2019-07-01 23:30:20 +02:00
Alex Kriuchykhin 7e4852d5aa
Merge pull request #1871 from okriuchykhin/ok_SCI_3511_v2 
Fix TinyMCE editor initialization for step editing [SCI-3511]
 2019-07-01 16:08:36 +02:00
Mojca Lorber 41935a9471 Remove unassign_user_from_project notification and change code to use helper method for assignment notification generation 2019-07-01 13:44:27 +02:00
Anton Ignatov 1f40fa69fc Merge branch 'features/marvinjs-integration' of https://github.com/biosistemika/scinote-web into features/marvinjs-integration 2019-07-01 11:51:27 +02:00
aignatov-bio a08d93376c
Add promo modal when MarvinJS disabled (#1872) 2019-07-01 11:51:13 +02:00
Anton Ignatov c9ae9f056e Merge branch 'okriuchykhin-ok_SCI_3539' into features/marvinjs-integration 2019-07-01 10:44:29 +02:00
aignatov-bio 2793777463
Features/docx report (#1873) 
* Initial setup for docx report

* Add render for project, experiment, my_module

* Implement converter for RTE fields

* Add all report elements

* fix markup

* Change headers, remove empty blocks, refactored repository draw

* Add smart annotations support

* Fix justify fields

* Prepare for addons integration

* Fix markup

* Add comments to GemFile

* Fix TinyMCE error

* Change UI for new report download selector

* Fix file error in inventory cell for docx

* Fix i18n object for header
 2019-07-01 10:14:16 +02:00
Anton Ignatov 390002f40f Merge branch 'ok_SCI_3539' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_3539 2019-07-01 10:12:26 +02:00
Oleksii Kriuchykhin 2f39b7f22b Fix TinyMCE editor initialization for step editing [SCI-3511] 2019-06-28 12:06:04 +02:00
Jure Grabnar ebbb36cc6d Remove border from the import button 2019-06-28 11:32:47 +02:00
Jure Grabnar 8146a6a42c Assign name = position if protocolsIO step has no name 2019-06-28 11:29:03 +02:00
Anton Ignatov 6be227b2d3 Merge branch 'master' of https://github.com/biosistemika/scinote-web into features/marvinjs-integration 2019-06-28 10:47:38 +02:00
Jure Grabnar 5430fb311d Hound fixes 2019-06-28 10:41:20 +02:00
Jure Grabnar c10428cd2a Fix sorting buttons not applying params 2019-06-28 08:55:27 +02:00
Jure Grabnar 1a9fca87d2 Fix non-existent protocol-card in preview banner 2019-06-28 08:49:12 +02:00
Oleksii Kriuchykhin 5acb16d43e Update Asset helper methods [SCI-3539] 2019-06-28 08:17:09 +02:00
Jure Grabnar 149f45f4fc Hound fixes 2019-06-28 02:31:25 +02:00
Jure Grabnar bc4b07cc0f Refactor hardcoded protocol_source in SearchService 2019-06-28 02:26:31 +02:00
Jure Grabnar 9be4fc2470 Fix tests 2019-06-28 02:19:06 +02:00
Jure Grabnar 7fb696cf48 Fix unclickable import modal 2019-06-28 02:00:05 +02:00
Jure Grabnar 03b81400a9 Add timeout to search 2019-06-28 01:50:52 +02:00
Jure Grabnar 1ccabf62b3 Add preview banner in external protocols 2019-06-28 01:38:33 +02:00
Jure Grabnar 81695665c7 Add hover effect on the card 2019-06-28 00:47:08 +02:00
Jure Grabnar d3afcbed50 Style card view on external protocols 
Closes SCI-3535
 2019-06-28 00:43:05 +02:00
Jure Grabnar 7fb650a125 Change click -> onchange event for sort_by buttons 2019-06-27 22:56:38 +02:00
Jure Grabnar 0a77cedaf8 Fix sorting of external protocols and start showing results 2019-06-27 22:48:56 +02:00
Jure Grabnar 8338892fc6 Update external protocols form to include sort_by 2019-06-27 21:26:28 +02:00
Urban Rotnik 9cb4454537 New implementation for attachments creation 2019-06-27 17:02:06 +02:00
Urban Rotnik 1fd0ca6795 Add steps preview 2019-06-27 16:46:02 +02:00
Urban Rotnik 2761079479 Add modal for import 2019-06-27 16:46:02 +02:00
Jure Grabnar 82fb8ebd2e
Implement protocols.io error handling (#1869) 
Implement protocols.io error handling
 2019-06-27 16:35:55 +02:00
Jure Grabnar 06b8d1fda7 Update ApiClient tests 
Closes SCI-3434
 2019-06-27 14:54:19 +02:00
Jure Grabnar 8a7a2eb097 Add StandardError checking for ProtocolNormalizer 2019-06-27 10:12:00 +02:00
Jure Grabnar d31f978e55 DRY up protocols importer services errors 2019-06-27 10:11:36 +02:00
Jure Grabnar 86bc69e510 Simplify V3 errors structure 2019-06-27 09:42:21 +02:00
Jure Grabnar 7d71608166 Add spinner to external preview 2019-06-26 19:43:35 +02:00
Mojca Lorber 9fd83d54a0 Put network error handeling into api and refactor errors 2019-06-26 14:04:03 +02:00
Oleksii Kriuchykhin ba2daede0b Add migration scripts [SCI-3539] 2019-06-24 15:17:42 +02:00
aignatov-bio 83bc9eb22f
Merge pull request #1839 from aignatov-bio/ai-sci-3369-activity-for-edited-image-annotation 
Adding new activities for image editing [SCI-3369]
 2019-06-24 10:31:39 +02:00
aignatov-bio 57e0478b81
Merge pull request #1855 from aignatov-bio/ai-sci-3583-fix-table-header-in-report 
Fix handsontable [SCI-3583]
 2019-06-24 09:39:35 +02:00
aignatov-bio 81c76fb112
Merge pull request #1854 from aignatov-bio/ai-sci-3586-comment-counter-not-updated 
Fix comments counter for zero comments [SCI-3586]
 2019-06-24 09:39:22 +02:00
aignatov-bio 8ec6802b19
Merge pull request #1853 from aignatov-bio/ai-sci-3581-too-long-protocol-name-in-task 
Trunc long protocol name on task page [SCI-3581]
 2019-06-24 09:39:07 +02:00
Anton Ignatov ab73987245 improve connector perfomance 2019-06-23 00:48:50 +02:00
Anton Ignatov 31c6802a06 Add support for marvinjs on service 2019-06-23 00:09:49 +02:00
Anton Ignatov 8240c8baad Initial refactoring for remote api support 2019-06-22 01:51:59 +02:00
Anton Ignatov 7e5c39d3e4 Merge branch 'master' into features/marvinjs-integration 2019-06-21 14:51:45 +02:00
Anton Ignatov 76e09a2a3d Clear TinyMce autosave after manual save 2019-06-21 14:21:03 +02:00
Anton Ignatov dfece85ea1 Fix handsone table 2019-06-21 11:16:44 +02:00
Anton Ignatov 57ef9573f2 Fix comments counter for zero comments 2019-06-21 10:43:41 +02:00
Anton Ignatov bc98cac9cc Trunc long protocol name on task page 2019-06-20 15:28:15 +02:00
Alex Kriuchykhin db7c6435b3
Merge pull request #1851 from okriuchykhin/ok_SCI_3436 
Implement saving of attachments ordering on steps [SCI-3436]
 2019-06-20 11:31:15 +02:00
Anton Ignatov df344f4d03 Merge branch 'master' into ai-sci-3369-activity-for-edited-image-annotation 2019-06-20 09:43:53 +02:00
Anton Ignatov 3069ec8dd2 Add check for edit permission 2019-06-20 09:43:23 +02:00
Jure Grabnar b2b752fcf8 Fix hound complaints 2019-06-19 23:37:04 +02:00
Jure Grabnar fcd42a4178 Fix border radius around active sort button 2019-06-19 22:59:30 +02:00
Jure Grabnar b3c3b68dc2 Add external preview to External Protocols tab 
Closes SCI-3563
 2019-06-19 22:54:20 +02:00
Anton Ignatov a843a016a0 Fix markup and naming 2019-06-19 15:19:47 +02:00
Oleksii Kriuchykhin f2b617ac12 Fix code formatting [SCI-3436] 2019-06-19 14:23:12 +02:00
Oleksii Kriuchykhin ae1a63037b Raise an exception if required methods for ViewableModel are not implemented [SCI-3436] 2019-06-19 14:17:17 +02:00
Anton Ignatov dae5a661c9 Merge branch 'master' of https://github.com/biosistemika/scinote-web 2019-06-19 14:11:51 +02:00
aignatov-bio 83b9efd7dd Fix right floating images in RTE editor (#1842) 2019-06-19 14:06:33 +02:00
aignatov-bio 609c408c77 Fix error on new step saving command (#1845) 2019-06-19 14:06:25 +02:00
aignatov-bio 5734d0cdd7 Fix TinyMCE field selector for steps (#1844) 2019-06-19 14:06:16 +02:00
aignatov-bio 4ddcbe5d75 Fix user permission for recent protocols (#1843) 2019-06-19 14:06:02 +02:00
aignatov-bio 9653f16196
Convert image to base64 in PDF reports [SCI-3557] (#1835) 
* Convert image to base64 in PDF reports

* Fix typo error
 2019-06-19 13:57:04 +02:00
aignatov-bio 81d10c8ce4
Remove recent protocol button on new step (#1841) 2019-06-19 12:49:22 +02:00
Urban Rotnik bf6041e13d Update sanitization of html descriptions 2019-06-19 11:05:22 +02:00
Urban Rotnik 7e69375016 Drop header column and row when extract tables 2019-06-19 10:47:38 +02:00
Urban Rotnik 2a579f2240 Add Warnings, Before start and Guidelinese to protocol description 2019-06-19 09:02:42 +02:00
Mojca Lorber ebcaa4b014 Implement protocols.io error handling for api client and normalizer 2019-06-18 14:01:57 +02:00
Urban Rotnik c691ad80b5 Add fields to query params for ApiClient 2019-06-17 12:24:16 +02:00
Urban Rotnik 88d96c0938 Use service in controller 2019-06-17 12:24:15 +02:00
Urban Rotnik 7fad5fc594 Add search service and normalizer for list 2019-06-17 12:24:15 +02:00
Jure Grabnar 4f6397b5b9 Add form to external_sources#new action 
Closes SCI-3532
 2019-06-17 12:24:15 +02:00
Jure Grabnar c8b8bcffdb Add external_protocols#show action 2019-06-17 12:24:14 +02:00
Jure Grabnar f7c6f78925 Add external_protocols#index action 2019-06-17 12:24:14 +02:00
Jure Grabnar 2a61075156 Add ExternalProtocols#create action and tests 2019-06-17 12:24:14 +02:00
Jure Grabnar 9baa66c998 Refactor OnlineSources -> ExternalProtocols 2019-06-17 12:24:13 +02:00
Jure Grabnar eb0d677a36 Refactor pio_protocol -> built_protocol 2019-06-17 12:24:13 +02:00
Jure Grabnar 94e7fe1e6c OnlineSourcesController skeleton and #new action tested 2019-06-17 12:24:13 +02:00
Jure Grabnar 7adef9cc9e Change sort buttons positions 
Closes SCI-3534
 2019-06-17 12:24:13 +02:00
Jure Grabnar 218cf84775 Hound fixes 2019-06-17 12:24:12 +02:00
Jure Grabnar d103f8ffec Finish external protocols screen 
Closes SCI-3534
 2019-06-17 12:24:12 +02:00
Jure Grabnar 0b60da9b4c Add ExternalProtocols skeleton tab 2019-06-17 12:24:12 +02:00
Urban Rotnik 0d43ecdfab Import protocol service after object is built 2019-06-17 12:24:11 +02:00
Jure Grabnar eb275c4d12 Add tests for BuildProtocolService and fix bugs 2019-06-17 12:24:11 +02:00
Jure Grabnar 362b0cd45d Hound fixes 2019-06-17 12:24:11 +02:00
Jure Grabnar 640f6c1211 Fix tests after BuildProtocolFromClientService refactor 
Closes SCI-3544
 2019-06-17 12:24:11 +02:00
Jure Grabnar 1e8627c450 Refactor ImportProtocol service to BuildProtocolService 
Closes SCI-3544
 2019-06-17 12:24:10 +02:00
Urban Rotnik a15596a126 Add ImportProtocolService 2019-06-17 12:24:10 +02:00
Urban Rotnik 2bb4f558b7 View rendering simplified, small improvements 2019-06-17 12:24:09 +02:00
Urban Rotnik 807104035c Add StepBuilder, TableBuilder, AssetBuilder for PIO, normalized updated 2019-06-17 12:24:09 +02:00
Urban Rotnik 6a4deb0201 Add ProtocolIntermediateObject 2019-06-17 12:24:09 +02:00
Urban Rotnik aadf2eecb4 Basic data normalizer for ProtocolIO 2019-06-17 12:24:08 +02:00
Urban Rotnik ec49388283 Add protocol base normalizer class 2019-06-17 12:24:08 +02:00
Jure Grabnar c1cee07a63 Extract API client constants to constants.rb 2019-06-17 12:24:08 +02:00
Jure Grabnar a15b1f6dfa Add logging for ApiClient and fix hound formatting 2019-06-17 12:24:08 +02:00
Jure Grabnar 5685709f48 Implement API client for protocols.io 
Closes SCI-3357
 2019-06-17 12:24:07 +02:00
aignatov-bio fb3b7918af
Fix handson table issue (#1827) 2019-06-14 16:21:27 +02:00
aignatov-bio 2dfbdacfa3
Change restore button background (#1829) 2019-06-14 16:21:01 +02:00
aignatov-bio da8d748c49
Fix small comments bugs (#1832) 2019-06-14 16:20:47 +02:00
aignatov-bio 68937dd192
Fix RTE import for protocol repository (#1833) 2019-06-14 16:20:27 +02:00
aignatov-bio 7a3eedf461
Adding missing avatars to comments (#1838) 2019-06-14 16:20:13 +02:00
Anton Ignatov f480c0eb8d Adding new activtiies for image editing 2019-06-14 16:15:30 +02:00
aignatov-bio 52a2f5cd0e
Add recent protocols dropdown to task page [SCI-3417] (#1800) 
* Add recent protocols dropdown to task page
 2019-06-13 15:47:29 +02:00
Oleksii Kriuchykhin 097639e71e Fix view state validation [SCI-3436] 2019-06-13 14:28:46 +02:00
Alex Kriuchykhin 599274eb13
Merge pull request #1830 from okriuchykhin/ok_SCI_3528 
Make repositories more extendable [SCI-3528]
 2019-06-13 09:45:18 +02:00
Alex Kriuchykhin bc94771828
Merge pull request #1791 from okriuchykhin/ok_SCI_3461 
Refactor the async thumbnail reloading (spinner) [SCI-3461]
 2019-06-12 15:35:15 +02:00
Alex Kriuchykhin 4f851b0995
Merge pull request #1816 from aignatov-bio/ai-sci-3525-fix-nil-error-in-module-tag-controller 
Fix nil issue in tags_my_module controller [SCI-3525]
 2019-06-12 13:11:40 +02:00
Oleksii Kriuchykhin a855eade4c Merge branch 'master' into ok_SCI_3461 2019-06-11 17:48:02 +02:00
Oleksii Kriuchykhin 4d579db2e2 Refactor assets polling to use setTimeout [SCI-3461] 2019-06-11 13:14:07 +02:00
mlorb fa28e772f0
Merge pull request #1807 from mlorb/ml-sci-3508 
Fix some css on step panel heading [SCI-3508]
 2019-06-11 11:12:12 +02:00
Oleksii Kriuchykhin 6e1a7a3392 Implement saving of attachments ordering on steps [SCI-3436] 2019-06-11 10:08:33 +02:00
Jure Grabnar bbfe2b9c89
Merge pull request #1798 from biosistemika/jg_sci_3145_thumbnail_preview 
File preview on new attachments layout [SCI-3145]
 2019-06-10 17:59:12 +02:00
Jure Grabnar 56949db9da Move extract_image_quality to before_post_process 2019-06-10 17:48:00 +02:00
Jure Grabnar c2d615ab48 Remove image quality preprocessor 2019-06-10 15:10:07 +02:00
Urban Rotnik bbe0062bfd Small fixes for factories 2019-06-10 12:24:05 +02:00
Urban Rotnik 965b7eb58b Add missing factories 2019-06-10 12:24:04 +02:00
Urban Rotnik f19eeba8dc Add factory valid check for User's associations 2019-06-10 12:24:04 +02:00
Urban Rotnik ba340f7bee Add valid factory check for Table, Tag, Team 2019-06-10 12:24:03 +02:00
Urban Rotnik 9348886fb1 Minior changes in SystemNotifications tests 2019-06-10 12:24:03 +02:00
Urban Rotnik 15cbd8864c Add valid factory check to Steps models 2019-06-10 12:24:03 +02:00
Urban Rotnik 1e60102a7d Add valid factory check for Sample(s) models 2019-06-10 12:24:02 +02:00
Urban Rotnik c66aa29227 Add valid factory check for Result(s) models 2019-06-10 12:24:02 +02:00
Urban Rotnik 3adf2bb736 Add factories and validation tests for repositories and related models 
Repositories, cells, columns, values (date, text, asset, list), rows, items
 2019-06-10 12:24:02 +02:00
Urban Rotnik a7558d83be Add valid factory check for Project, MyModules, notification, protocol 2019-06-10 12:24:01 +02:00
Urban Rotnik 3348b81b14 Checklist, checklist_item, activity, experiment spec and factories updated 2019-06-10 12:24:01 +02:00
Urban Rotnik 6321c0f5c0 Assets spec and factories updated 2019-06-10 12:24:01 +02:00
Mojca Lorber ca1b91a409 css fix again 2019-06-10 11:23:40 +02:00
Oleksii Kriuchykhin 8920d38a02 Make repositories more extendable [SCI-3528] 2019-06-06 17:28:59 +02:00
Oleksii Kriuchykhin e543a849d4 Add document file preview generation with LibreOffice [SCI-3145] 2019-06-05 14:52:30 +02:00
aignatov-bio d553fee2b3
Prevent negative scroll for sidebar (#1819) 2019-06-05 12:41:27 +02:00
Urban Rotnik 3d3c6d5350 Toolbar position fix for Safari 2019-06-04 15:55:44 +02:00
Alex Kriuchykhin db399864f8
Merge pull request #1820 from okriuchykhin/ok_SCI_3526 
Update Handsontable to 6.2.2 [SCI-3526]
 2019-06-04 14:59:22 +02:00
Alex Kriuchykhin 36255f82ed
Merge pull request #1817 from okriuchykhin/ok_SCI_3522 
Add system notifications service to health check endpoint [SCI-3522]
 2019-06-04 14:41:43 +02:00
aignatov-bio d207cf5dce
Refactored comments over SciNote [SCI-3505] (#1808) 
* Preparing helpers for comments

* Refactored comments over scinote

* Update events
 2019-06-04 14:40:21 +02:00
Oleksii Kriuchykhin 01a5a17bb4 Update Handsontable to 6.2.2 [SCI-3526] 2019-06-04 14:31:37 +02:00
Anton Ignatov d0439f478d Fix markup 2019-06-03 09:52:04 +02:00
Anton Ignatov 559bb2d793 Prevent selecting empty tag 2019-06-03 09:50:55 +02:00
Luka Murn cedb10f83e
Merge pull request #1815 from Ducz0r/lm-sci-2991 
Rename permision_eval - permission_eval [SCI-2991]
 2019-06-03 09:24:20 +02:00
Anton Ignatov 5df55d39be Fix nil issue in module controller 2019-05-31 16:02:21 +02:00
Oleksii Kriuchykhin 552f69b9b1 Add system notifications service to health check endpoint [SCI-3522] 2019-05-31 15:52:47 +02:00
aignatov-bio cd7460a4bd
Add croppie tool to avatar editing [SCI-3502] (#1801) 
* Add croppie tool to avatar editing
 2019-05-31 15:44:27 +02:00
Anton Ignatov 16d00340cd Fix merge errors 2019-05-31 10:35:04 +02:00
Anton Ignatov c9a29b12ba Merge branch 'master' into features/marvinjs-integration 2019-05-31 10:27:14 +02:00
Luka Murn b21bdddf15 Rename permision_eval - permission_eval 
Hopefully this will help with getting rid of all the errors
that we've been receiving for PermissionEval.

Closes SCI-2991.
 2019-05-31 09:56:54 +02:00
aignatov-bio 94b220172d
Fix empty result name issue (#1812) 2019-05-31 09:48:58 +02:00
aignatov-bio 3681df7b9f
Fix scroll issue in repository column editor (#1813) 2019-05-31 09:48:45 +02:00
Alex Kriuchykhin 27ccf7b8fe
Merge pull request #1803 from okriuchykhin/ok_SCI_3412 
Add additional checks for inventory state objects [SCI-3412]
 2019-05-30 16:09:13 +02:00
Alex Kriuchykhin 75f122aa15
Merge pull request #1809 from okriuchykhin/ok_SCI_3506 
Fix import of ELN protocols [SCI-3506]
 2019-05-30 16:08:27 +02:00
mlorb 111c062981
Merge pull request #1802 from mlorb/ml-sci-3470 
Hide create office file button to user without permission [SCI-3470]
 2019-05-30 14:27:19 +02:00
Alex Kriuchykhin c49dbe5c44
Merge pull request #1810 from okriuchykhin/ok_SCI_3511 
Fix RTE editor initialization for new step in protocol [SCI-3511]
 2019-05-30 12:54:36 +02:00
Oleksii Kriuchykhin d061aec5cd Fix RTE editor initialization for new step in protocol [SCI-3511] 2019-05-29 18:33:20 +02:00
Oleksii Kriuchykhin 6917ea56e8 Fix import of ELN protocols [SCI-3506] 2019-05-29 15:41:54 +02:00
Mojca Lorber ca4d8e71bb fix some css on step panel heading 2019-05-29 13:56:55 +02:00
Oleksii Kriuchykhin 2c9ced0c75 Fix step numbering update on reposition [SCI-3507] 2019-05-29 12:20:35 +02:00
Oleksii Kriuchykhin 5a9640c5d1 Add aditional checks for inventory state objects [SCI-3412] 2019-05-27 17:32:21 +02:00
aignatov-bio 0b3b6d593b
Small style fixes [SCI-3498] (#1799) 
* Adding error, if TinyMCE asset not in text, when we copy anything

* Small style fixes
 2019-05-27 16:27:27 +02:00
Mojca Lorber a3c29738bb Hide create office file button to user without permission 2019-05-27 14:58:10 +02:00
Luka Murn d7fe23c6ce
Merge pull request #1796 from Ducz0r/lm-sci-3494 
Fix the user.activities association so it works [SCI-3494]
 2019-05-24 14:21:42 +02:00
Luka Murn 3a2bf2ce8a
Merge pull request #1780 from Ducz0r/lm-perform-wopi-checks-on-startup 
Add a startup check for WOPI_ENABLED == true variables
 2019-05-22 16:56:55 +02:00
aignatov-bio 0f86ebf173
Adding error, if TinyMCE asset not in text, when we copy anything [SCI-3495] (#1797) 
* Adding error, if TinyMCE asset not in text, when we copy anything
 2019-05-22 16:13:40 +02:00
Luka Murn 8b116d9de7 Fix the user.activities association so it works 
Closes SCI-3494.
 2019-05-22 15:42:50 +02:00
aignatov-bio 8f2d873130
Fix error when editing office document (#1793) 2019-05-22 10:34:16 +02:00
aignatov-bio fb30e6b6e5
Add check for refreshProtocolStatusBar function exist (#1794) 2019-05-22 10:31:29 +02:00
aignatov-bio da33a053cf
Fix avatar image position on global activities (#1792) 2019-05-22 10:21:18 +02:00
Oleksii Kriuchykhin 84a2ad4487 Refactor the async thumbnail reloading (spinner) [SCI-3461] 2019-05-21 17:29:33 +02:00
aignatov-bio 2cee46a10d
Fix experiment name length (#1789) 2019-05-21 15:54:01 +02:00
aignatov-bio d97e803d01
Adding placeholder to TinyMCE editor (#1788) 2019-05-21 15:53:47 +02:00
aignatov-bio 59e824ef9e
Fix nil handling in different places [SCI-2840] (#1777) 
* Fix nil handling in different places
 2019-05-21 15:53:34 +02:00
mlorb be0393e642
Merge pull request #1785 from biosistemika/lm-ml-sci-3193 
Update protocol status bar upon protocol changing [SCI-3193]
 2019-05-21 15:28:58 +02:00
aignatov-bio 2de2ead723
Refactor avatar image appearance across Scinote [SCI-3482] (#1787) 
* Refactor avatar appearance across Scinote
 2019-05-21 15:19:44 +02:00