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Author SHA1 Message Date
Martin Artnik 53e072f79e Added error handling to API wrapper [SCI-5939] 2021-07-27 10:36:06 +02:00
Martin Artnik 61919e81b6 Remove FLUICS API client hack [SCI-5939] 2021-07-27 09:41:51 +02:00
Martin Artnik b32b207f3d Added FLUICS API client [SCI-5939] 2021-07-23 13:52:28 +02:00
Oleksii Kriuchykhin c26dcf4b23 Replace empty? with blank? [SCI-5579] 2021-07-23 11:56:28 +02:00
Martin Artnik 662370d2bd Removed auto-disable, fixed ActiveJob + DelayedJob retry handling [SCI-5800] 2021-07-22 13:43:36 +02:00
Martin Artnik 4bb080c25b Merge migrations, code fixes [SCI-5800] 2021-07-22 10:51:03 +02:00
Martin Artnik 04b94d504d Moved activity logging to controller [SCI-5879] 2021-07-22 09:52:04 +02:00
Alex Kriuchykhin dfa2a7775d
Merge pull request #3422 from okriuchykhin/ok_SCI_5847 
Fix repository cell joining and preloading [SCI-5847]
 2021-07-21 13:18:21 +02:00
Alex Kriuchykhin dbc54278b2
Merge pull request #3211 from okriuchykhin/ok_SCI_5531 
Add basic API client for BMT [SCI-5531]
 2021-07-21 13:13:52 +02:00
Oleksii Kriuchykhin 36708b47cf Fix code styling [SCI-5531] 2021-07-21 13:10:30 +02:00
artoscinote 888131a465
Merge branch 'features/bioeddie-integration' into ma_SCI_5879 2021-07-20 09:48:13 +02:00
aignatov-bio 53456988ba
Add bioEddie activities and user licenses [SCI-5845][SCI-5842] (#3411) 
* Add bio eddie licens to users [SCI-5845]

* Add activities for BioEddie [SCI-5842]
 2021-07-19 21:33:28 +02:00
artoscinote 5f9c04844f
Added prefixed IDs to repository rows (items) [SCI-5909] (#3441) 
* Added prefixed IDs to repository rows (items) [SCI-5909]

* Fix prefixed id queries to work with joins, use subquery in repository search [SCI-5909]

* Fixed accessing repository_row parent code [SCI-5909]

* Better handling of repository_row code display [SCI-5909]

* Fix index warning for id prefixed models issue setting up project [SCI-5909]
 2021-07-19 14:23:36 +02:00
Martin Artnik 96a5b97bdb Implement Save & Register molecule [SCI-5879] 2021-07-15 12:37:04 +02:00
Oleksii Kriuchykhin 549fc8e5a0 Fix repository cell joining and preloading [SCI-5847] 2021-07-07 17:43:51 +02:00
Oleksii Kriuchykhin d1208bad0b Merge branch 'develop' into features/new_permissions 2021-07-07 13:44:36 +02:00
Martin Artnik 3662365cac Small code style tweak SCI-5800 2021-06-30 13:15:08 +02:00
Martin Artnik 618f5cfb53 Code style fixes [SCI-5800] 2021-06-30 13:08:16 +02:00
artoscinote 723b594632
Merge pull request #3398 from artoscinote/ma_SCI_5828 
Expose experiment IDs in interface and reports [SCI-5828]
 2021-06-30 12:58:25 +02:00
Martin Artnik b623e2f40f Report generation fixes [SCI-5851] 2021-06-29 13:46:45 +02:00
aignatov-bio 786e74e4de
Add BioEddie integration [SCI-5654][SCI-5657][SCI-5658][SCI-5670] (#3391) 
* Add backend for bioeddie [SCI-5654]

* Add modal for bioeddie [SCI-5654]

* Add bio eddie editor to steps and results [SCI-5654]

* Fix markup and code styling
 2021-06-23 19:48:44 +02:00
Martin Artnik d67d53b926 Code style fixes 2021-06-22 13:27:03 +02:00
Martin Artnik 66d2e65114 Fixed report docx generation [SCI-5837] 2021-06-21 12:52:12 +02:00
Martin Artnik 879cf5081d Added experiment code to experiment cards filter [SCI-5829] 2021-06-18 14:38:07 +02:00
Martin Artnik afc1b2d8b6 Added experiment code to PDF and DOCX [SCI-5830] 2021-06-18 14:14:02 +02:00
Oleksii Kriuchykhin bb458abec6 Remove old reports code [SCI-5650] 2021-06-18 10:40:00 +02:00
Martin Artnik c6648111f3 Code style fixes [SCI-5800] 2021-06-17 22:00:13 +02:00
Oleksii Kriuchykhin 1e3197875c Fix repositories selection in report wizard and deleted repositories handling [SCI-5831] 2021-06-17 16:23:27 +02:00
Martin Artnik 47071e23a1 Added specs for webhooks 2021-06-17 14:54:30 +02:00
Alex Kriuchykhin 4caa5f9ac1
Merge pull request #3394 from okriuchykhin/ok_SCI_5776_v2 
Fix repository snapshots for export all [SCI-5776]
 2021-06-17 11:35:16 +02:00
Martin Artnik 4ee50f87d5 Implement webhook service and scheduling jobs [SCI-5801, SCI-5802] 2021-06-17 09:19:04 +02:00
Oleksii Kriuchykhin 85a5cca98a Fix repository snapshots for export all [SCI-5776] 2021-06-16 16:17:12 +02:00
aignatov-bio 12d8b84cfd
Fix snapshots for deleted inventory [SCI-5826] (#3393) 2021-06-16 15:23:34 +02:00
aignatov-bio 7313b5fa16
Add archived and deleted repositories to reports [SCI-5781] (#3387) 
* Add archived and deleted repositories to reports [SCI-5781]

* Small markup fix [SCI-5781]
 2021-06-16 10:56:08 +02:00
Martin Artnik 6cf9ea5bc0 Implement Activity -> ActivityFilter matching service [SCI-5800] 2021-06-15 16:13:28 +02:00
aignatov-bio 9103fcf356
Add project header to reports [SCI-5798] (#3380) 2021-06-14 12:42:18 +02:00
aignatov-bio 0e87c44c4f
Fix empty elements in docx rtf table [SCI-5659] (#3382) 2021-06-14 12:41:34 +02:00
zmagoD 25802d7043 adopt move/clone my module logic to work with new user assignments (SCI-5805) 2021-06-12 18:51:55 +02:00
Martin Artnik c17192730e Lock repository_row before inserting RepositoryCell in SavePdfToInventoryItem [SCI-5794] 2021-06-09 15:44:38 +02:00
Miha Mencin 46e2adf2e3
Merge pull request #3334 from okriuchykhin/ok_SCI_5730 
Improve filtering for inventories [SCI-5730]
 2021-06-09 09:50:56 +02:00
Oleksii Kriuchykhin 16bad9eb9c Fix export all functionality [SCI-5776] 2021-06-08 14:21:34 +02:00
Miha Mencin ef77c9d67d
Merge pull request #3363 from okriuchykhin/ok_SCI_5774 
Fix dates formatting in report templates [SCI-5774]
 2021-05-31 14:23:19 +02:00
Oleksii Kriuchykhin 92821d7f1e Fix dates formatting in report templates [SCI-5774] 2021-05-31 11:51:04 +02:00
Alex Kriuchykhin cdbcbd0409
Merge pull request #3357 from okriuchykhin/ok_SCI_5751 
Fix deletion of old reports [SCI-5751]
 2021-05-28 13:59:36 +02:00
Oleksii Kriuchykhin 70f0535dbd Fix deletion of old reports [SCI-5751] 2021-05-27 16:31:58 +02:00
aignatov-bio 24f4f6cbb2 Fix report experiments sorting [SCI-5762] 2021-05-27 12:44:45 +02:00
Miha Mencin 30a116fc83
Merge pull request #3346 from okriuchykhin/ok_SCI_5735 
Refactor DOCX report generator [SCI-5735]
 2021-05-24 11:25:13 +02:00
aignatov-bio f576af078e Fix repository selection in report wizard [SCI-5749] 2021-05-24 09:40:50 +02:00
Oleksii Kriuchykhin 64ce35c8da Refactor DOCX report generator [SCI-5735] 2021-05-21 16:40:38 +02:00
Oleksii Kriuchykhin 29c83ffbb1 Merge branch 'develop' into features/new-reports 2021-05-21 11:04:17 +02:00
Oleksii Kriuchykhin 0ff1277dbf Improve filtering for inventories [SCI-5730] 2021-05-19 22:48:52 +02:00
zmagoD c23c01c01c remove user projects enpoints, fix the role name display 2021-05-16 12:03:16 +02:00
Oleksii Kriuchykhin c0ef2eef3c Improve report saving performance and error handling [SCI-5614] 2021-05-06 10:53:40 +02:00
Oleksii Kriuchykhin 1abc0dc1eb Fix tests [SCI-5636] 2021-05-03 13:03:26 +02:00
Oleksii Kriuchykhin bca88188de Limit created report relations depth to tasks [SCI-5665] 2021-04-28 15:33:30 +02:00
aignatov-bio 7c75f170d0
Add repositories settings to report wizard [SCI-5648] (#3269) 
* Add repositories settings to report wizard [SCI-5648]

* Move repositories from report settings to content [SCI-5648]
 2021-04-28 09:54:00 +02:00
aignatov-bio d18a54c874
Update create and update action for reports controller [SCI-5641] (#3260) 
Update create and update action [SCI-5641]
 2021-04-20 13:35:40 +02:00
Oleksii Kriuchykhin fe8f006f6e Fix save report PDF to Inventory [SCI-5613] 2021-04-14 16:06:59 +02:00
Oleksii Kriuchykhin 0a9a656313 Add flash message and notification for generated reports [SCI-5552] 2021-04-14 15:45:51 +02:00
miha 56ebc3dc07 [SCI-5635] add a migration to fix broken steps, fix the api so it sets last_modified_by_id, minor step model refactor 
migration fix

remove the conditoin for set_last_modified_by callback

set the last_modified_by_id in before_save callback (in case it is not set yet)

remove trailing spaces

Set last modified in protocl import service
 2021-04-12 09:59:00 +02:00
Oleksii Kriuchykhin f7c865974d Switch to graphviz gem [SCI-5596] 2021-03-25 17:42:57 +01:00
Oleksii Kriuchykhin ab9fd65a19 Add basic API client for BMT [SCI-5531] 2021-03-12 10:53:10 +01:00
aignatov-bio c6e4d6ef94 Fix activities multiple types selected [SCI-5546] 2021-03-10 12:59:02 +01:00
Urban Rotnik 8202181095
Merge pull request #3186 from urbanrotnik/ur-sci-4140-fix-notifications 
Bring back old notifications [SCI-4140]
 2021-03-09 14:54:08 +01:00
Urban Rotnik 8bacc74c17
Merge pull request #3187 from urbanrotnik/ur-sci-5439 
Fix report completed_on time and username [SCI-5439]
 2021-03-09 13:27:24 +01:00
Oleksii Kriuchykhin 2b5709e75f Improve behavior of the scheduler, add caching to system notifications sync service [SCI-5526] 2021-03-02 17:28:07 +01:00
aignatov-bio 0c5a1a3e21 Fix tests [SCI-5528] 2021-02-26 16:29:56 +01:00
Urban Rotnik 8ca8c84efd Fix report completed_on time and username (partially) 
SCI-5439
We cannot realy on last_modified_by, because it can be changed after step completion
 2021-02-25 13:24:21 +01:00
Urban Rotnik 1bb2393655 Use translations 
SCI-4140
 2021-02-25 11:59:26 +01:00
Oleksii Kriuchykhin e8b4a30b87 Improve inventory table loading speed [SCI-5509] 2021-02-22 10:34:06 +01:00
Alex Kriuchykhin d3e960fe2b
Merge pull request #3173 from okriuchykhin/ok_SCI_5494 
Multiple small bugfixes [SCI-5494]
 2021-02-18 14:35:40 +01:00
Oleksii Kriuchykhin 7d89088b14 Multiple small bugfixes [SCI-5494] 2021-02-18 13:55:03 +01:00
Urban Rotnik f29fd76822 Fix archived_on sorting 2021-02-18 09:42:17 +01:00
Urban Rotnik 933dcc93c7 Fix query with counts 2021-02-17 16:50:09 +01:00
aignatov-bio 4f8e15dbc6 Fix activities service [SCI-5485] 2021-02-15 10:23:32 +01:00
aignatov-bio 486dae7559 Add task counter to experiment card [SCI-5467] 2021-02-10 14:50:42 +01:00
Alex Kriuchykhin 1466ae114f
Merge pull request #3027 from okriuchykhin/ok_SCI_5246 
Remove Demo project and Samples inventory [SCI-5246][SCI-5248]
 2021-02-04 11:28:09 +01:00
Alex Kriuchykhin dd9d75a643
Merge pull request #3130 from okriuchykhin/ok_SCI_5458 
Improve visibility of experiment workflow image [SCI-5458]
 2021-02-04 11:27:27 +01:00
aignatov-bio 7726eae4da Add experiments page load logic and connect filters [SCI-5457] 2021-02-03 14:29:50 +01:00
Miha Mencin 259d7d5e7c
Merge pull request #3132 from biosistemika/release/1.21.1 
Release/1.21.1
 2021-02-03 11:49:04 +01:00
Oleksii Kriuchykhin 58ddfe80e4 Improve visibility of experiment workflow image [SCI-5458] 2021-02-02 22:23:11 +01:00
aignatov-bio e206892864 Add p element to docx list allowed elements [SCI-5461] 2021-02-02 11:26:54 +01:00
Oleksii Kriuchykhin 324c268594 Remove Demo project and Samples repository [SCI-5246][SCI-5248] 2021-02-01 15:02:06 +01:00
aignatov-bio 8be9d3b14c
Merge pull request #3126 from biosistemika/features/new-experiments-page 
Features/new experiments page
 2021-01-29 13:28:11 +01:00
Oleksii Kriuchykhin 75da67b937 Update Rails to 6.1.1, ruby to 2.7.2 [SCI-5459] 2021-01-28 14:43:45 +01:00
Alex Kriuchykhin f1124f9ea0
Add experiments overview service [SCI-5430] (#3116) 2021-01-28 12:57:04 +01:00
Urban Rotnik ebbbfa657c
Fix folders activities [SCI-5402] [SCI-5403] (#3112) 
* Fix activities and make folders clickable

* Remove archive project activity and action

* Save nil value for root folder

* Add empty values to hash
 2021-01-22 11:24:08 +01:00
Alex Kriuchykhin f15d984d47
Fix navigation between archived and active projects [SCI-5419] (#3100) 
* Fix navigation between archived and active projects [SCI-5419]
 2021-01-19 11:28:59 +01:00
aignatov-bio 7cc6ce5659
Fix projects page member filter [SCI-5385] (#3074) 2021-01-12 14:49:24 +01:00
Oleksii Kriuchykhin 78ec862a2c Fix folder creation for archived view [SCI-5383] 2021-01-12 13:06:43 +01:00
Oleksii Kriuchykhin 684674952c Add Restore button to the archived Projects screen [SCI-5344] 2021-01-09 21:27:19 +01:00
Urban Rotnik be2949b316 Fix tests 2021-01-08 08:05:05 +01:00
Urban Rotnik 427b5d7107
Merge pull request #3059 from biosistemika/features/folders 
Features/folders into develop
 2021-01-08 06:26:44 +01:00
aignatov-bio 0d7da90b15
Small fixes for projects folder cards [SCI-5345] (#3049) 2021-01-07 17:02:25 +01:00
Alex Kriuchykhin 962b3a532e
Merge pull request #3057 from okriuchykhin/ok_SCI_5317 
Add project permissions check to projects toolbar [SCI-5317]
 2021-01-07 13:25:34 +01:00
aignatov-bio 1f6fff812a
Add projects navigation buttons and fix sidebar reload on sorting [SCI-5357][SCI-5331] (#3048) 
* Add projects navigation buttons and fix sidebar reload on sorting [SCI-5357][SCI-5331]
 2021-01-07 13:16:05 +01:00
Oleksii Kriuchykhin 9882539213 Add project permissions check to projects toolbar [SCI-5317] 2021-01-06 22:23:48 +01:00
aignatov-bio f795d5180d
Fix file previews bugs [SCI-5284] (#3026) 2021-01-05 09:11:22 +01:00
Oleksii Kriuchykhin 1c27b99ba5 Add default sorting to ProjectsOverviewService [SCI-5361] 2021-01-04 22:37:25 +01:00
Urban Rotnik a53bfbdd33
Merge pull request #3014 from urbanrotnik/ur-sci-5283-smart-annotation-archived-link 
Add 'archived' to smart annotation for repository item [SCI-5283]
 2021-01-04 11:53:47 +01:00