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149 commits

Author SHA1 Message Date
aignatov-bio f0b7771e19
Merge pull request #1943 from aignatov-bio/ai-sci-3629-add-metadata-to-protocol-repository-import-export 
Fix protocol copy, add metadata to assets [SCI-3629]
 2019-08-05 12:55:16 +02:00
Anton Ignatov 24da016465 Reuse duplicate file method 2019-08-05 11:30:36 +02:00
Oleksii Kriuchykhin a2fe4bee94 Add text extraction from MarvinJS for search [SCI-3643] 2019-08-02 15:17:28 +02:00
Anton Ignatov 7e379d4e0d Fix download file 2019-07-29 10:24:31 +02:00
Anton Ignatov b762ae6a90 Copy protocol assets through tempfile 2019-07-19 15:23:34 +02:00
Anton Ignatov 1e8663548e Add MarvinJS assets to TinyMCE 2019-07-16 13:40:54 +02:00
Anton Ignatov ba1d6d45ca Fix merging issues 2019-07-12 15:47:15 +02:00
Anton Ignatov ffd415d409 Inital refactor for Assets model 2019-07-12 15:02:06 +02:00
Anton Ignatov 7831b0a089 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 15:00:07 +02:00
Anton Ignatov 57a273d5d0 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 11:34:41 +02:00
Oleksii Kriuchykhin 64b7a5646a Implement custom document file previewer [SCI-3677] 2019-07-10 14:37:23 +02:00
Oleksii Kriuchykhin a1941a21dc Futher refactoring of old Paperclip methods [SCI-3539] 2019-07-09 10:28:15 +02:00
Oleksii Kriuchykhin 9d926dc956 Refactor TinyMce assets, user avatars, zip files [SCI-3539] 2019-07-05 16:56:05 +02:00
Oleksii Kriuchykhin c0c8e0e1a3 Refactor Experiment workflow images [SCI-3539] 2019-07-04 09:33:12 +02:00
Oleksii Kriuchykhin 4ea6b56582 Fix Step and Result file previews [SCI-3539] 2019-07-01 23:30:20 +02:00
Anton Ignatov 390002f40f Merge branch 'ok_SCI_3539' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_3539 2019-07-01 10:12:26 +02:00
Oleksii Kriuchykhin 5acb16d43e Update Asset helper methods [SCI-3539] 2019-06-28 08:17:09 +02:00
Oleksii Kriuchykhin ba2daede0b Add migration scripts [SCI-3539] 2019-06-24 15:17:42 +02:00
aignatov-bio 9653f16196
Convert image to base64 in PDF reports [SCI-3557] (#1835) 
* Convert image to base64 in PDF reports

* Fix typo error
 2019-06-19 13:57:04 +02:00
Jure Grabnar 56949db9da Move extract_image_quality to before_post_process 2019-06-10 17:48:00 +02:00
Jure Grabnar c2d615ab48 Remove image quality preprocessor 2019-06-10 15:10:07 +02:00
Oleksii Kriuchykhin e543a849d4 Add document file preview generation with LibreOffice [SCI-3145] 2019-06-05 14:52:30 +02:00
Luka Murn 4136aa0575 Add a startup check for WOPI_ENABLED == true variables 2019-05-18 10:22:53 +02:00
Oleksii Kriuchykhin 65fb4b1372 Fix processing_image_url for S3 storage [SCI-3381] 2019-05-14 12:53:35 +02:00
Luka Murn bd9ffe4bd2 Refactor WOPI filename length validation onto the model 2019-05-13 15:41:39 +02:00
Urban Rotnik 11a7a975af Merge branch 'features/scinote-improvements' into master-with-note-section 2019-04-23 14:50:03 +02:00
aignatov-bio 8d7cc57da1
Add zoom to image annotation and check jpeg file quality before save [SCI-3300] (#1654) 
* Add zoom to image annotation and check jpeg file quality before save
* Move compression to front end
* Move quality extractor to paperclip processor
 2019-04-15 09:49:44 +02:00
Jure Grabnar bc9eff2ef5 Add asset validation on wopi creation 
Missing file
 2019-04-04 17:05:25 +02:00
Oleksii Kriuchykhin ffa7c5ecb2 Fix permition checks for file editing and make protocol preview files read only [SCI-3281] 2019-04-02 16:38:53 +02:00
aignatov-bio 6eae12efab
Updating permission check for image editing [SCI - 3153, 3159] (#1568) 
*Add permission check for assets editing

* Add check for image format
 2019-03-19 13:52:57 +01:00
Urban Rotnik 7b6c6c414d Merge branch 'master' into features/templates 2019-02-19 14:46:15 +01:00
Oleksii Kriuchykhin fdff69f22e Add comment for Tika start up code [SCI-2967] 2019-02-07 11:06:25 +01:00
Oleksii Kriuchykhin 13c4bd25af Optionally disable Tika background mode through env variable [SCI-2967] 2019-02-04 16:47:29 +01:00
Oleksii Kriuchykhin bd2efa55ac Add templates business logic [SCI-2939] 2019-01-25 10:55:08 +01:00
Oleksii Kriuchykhin 380a96dcce Add caching for step and result fragments [SCI-2830] 2018-11-14 11:57:53 +01:00
Oleksii Kriuchykhin 7f7ece2be0 Improve delayed jobs for TempFile deletion and Asset text extraction [SCI-2738] 2018-09-21 17:46:18 +02:00
Oleksii Kriuchykhin 4ee9eb3134 Improve search speed on files and inventories [SCI-2739] 2018-09-17 17:06:47 +02:00
Oleksii Kriuchykhin 563005cf89 Fix files search results display [SCI-2601] 2018-07-26 09:55:18 +02:00
zmagod db1944cc90 move maximum file size limit to an ENV variable [fixes SCI-2415] 2018-06-19 14:15:14 +02:00
Zmago Devetak 74ccaf06b9
Merge pull request #1184 from ZmagoD/zd_SCI_2417 
adds asset_text_data to global search options
 2018-06-08 14:30:52 +02:00
zmagod 3da098cb60 fixes the issue with extraction of text from file [fixes SCI-2417] 2018-05-31 09:42:57 +02:00
Luka Murn 68f5a6bebd Fix inventory rows without files not being saved bug 
Closes SCI-2471.
 2018-05-30 14:41:20 +02:00
Oleksii Kriuchykhin e42fc3117b Implement search in file repository cells and improve performance [SCI-2111] 2018-03-26 13:19:09 +02:00
mlorb 34f5c2c7ac fix validation in asset model and change formatted method in repository_asset_value model 2018-03-12 10:50:45 +01:00
mlorb 64e26e1c60 add file custom column type to db 2018-03-09 17:04:54 +01:00
zmagod f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
Mojca Lorber 0ffe476a54 make background gray for paperclip images 2017-11-23 14:35:42 +01:00
Mojca Lorber f75a2710d5 fix preview for images with transparent background 2017-11-13 18:03:14 +01:00
Luka Murn ae5bccf709 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile.lock
	app/datatables/repository_datatable.rb
	app/models/repository_cell.rb
 2017-08-07 08:45:53 +02:00
zmagod b69ec22dfe fixes failing tests [fixes SCI-1470] 2017-07-28 10:14:50 +02:00
Nbernot d746ae2549 Removes parentheses around if conditions 2017-07-11 13:33:47 +02:00
Nejc Bernot 803934e07d Changes the host for the download and redirect paths 2017-07-05 10:23:10 +02:00
Nejc Bernot 91fe7fe4ad Changes the completely NOT ruby code 2017-07-04 17:13:59 +02:00
Nejc Bernot bd9904adb3 Adds support for business servers 
If the WOPI_BUSINESS_USERS environmental variable is set and true, indicates to Office online that all users are business users when trying to view/edit files
 2017-07-04 14:27:43 +02:00
zmagod 525c9770ac fixes experiment page [fixes SCI-1395] 2017-06-28 15:21:32 +02:00
zmagod 819f47b450 setup sciNote for Rails 5.1 2017-06-23 15:19:08 +02:00
Oleksii Kriuchykhin bd5a48b9c8 Improve code style [SCI-1158] 2017-05-08 18:00:14 +02:00
Oleksii Kriuchykhin 0ee7e11620 Add advanced search options [SCI-1158] 2017-05-05 16:41:23 +02:00
okriuchykhin 0fe84c4e24 Merge pull request #550 from okriuchykhin/ok_SCI_1157 
Improve speed of search [SCI-1157]
 2017-04-12 13:11:26 +02:00
Oleksii Kriuchykhin 07d658ab82 Improve speed of search [SCI-1157] 2017-04-11 14:55:44 +02:00
Matej Zrimšek 1447a34dc7 Files didn't get deleted in previous commit. [fixes SCI-1150] 2017-04-06 16:59:34 +02:00
Matej Zrimšek e72184d10d Fixed so that file deletion callbacks are triggered (and hence audit trails for this is generated). [fixes SCI-1150] 2017-04-06 11:34:03 +02:00
Oleksii Kriuchykhin 2edebb282a Add team_id field to assets and tables [SCI-1046] 2017-03-23 10:36:55 +01:00
zmagod 0c2523beca Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-03-10 16:21:43 +01:00
zmagod a193850ae6 rename models where org/organization 2017-01-24 16:34:21 +01:00
Oleksii Kriuchykhin aa2b573278 Enable image preview while editing steps and code style improvements [SCI-694] 2017-01-06 15:58:23 +01:00
zmagod a434649f42 Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-01-03 16:35:25 +01:00
Oleksii Kriuchykhin b537feb8a0 Added large preview [SCI-694] 2016-12-16 17:07:08 +01:00
zmagod b87246c8c2 cleanup spinner after edit step 2016-12-16 11:10:03 +01:00
zmagod de3099e4d1 removes asset_helper, fixes loading of processed thumbnails in results and steps and when loading protocols from repository 2016-12-09 13:59:49 +01:00
zmagod 40fdfef67f setup delayed_paperclip gem 2016-12-08 15:24:14 +01:00
zmagod ac52e643be cleanup direct upload 2016-12-08 11:26:13 +01:00
Nejc Bernot cb03ed8384 Users can now have multiple tokens 
A new token is generated whenever an edit or view file is called. Tokens have a TTL of one day.
Also enabled the toggling of both wopi and wopi test mode, using environmental variables.
 2016-11-30 16:48:42 +01:00
Oleksii Kriuchykhin d8f8e01a46 Code cleanup, added new image types to whitelist [SCI-736] 2016-11-28 11:13:20 +01:00
Oleksii Kriuchykhin cc0aab2e59 Improve regexp for image whitelisting [SCI-736] 2016-11-28 10:08:54 +01:00
Oleksii Kriuchykhin 74f6455a8f Add whitelisting of supported image types [SCI-736] 2016-11-25 16:12:43 +01:00
Matej Zrimšek 5966911b92 Fixed Hound alerts. 2016-10-17 11:57:46 +02:00
Matej Zrimšek 0780bd2416 Ruby constants are now automatically available in JS. Refactoring was needed. 2016-10-17 11:57:37 +02:00
Matej Zrimšek a3dfb59558 Added remaining constants. 2016-10-17 11:30:05 +02:00
Jure Grabnar 1e14955ade Prevent deleting asset on step update 2016-10-01 18:47:05 +02:00
Jure Grabnar 5c9e995e56 Don't delete asset on locked 2016-10-01 13:23:04 +02:00
Jure Grabnar a6ebff06a7 Add error message to wopi discovery 
Fix ambigious open call
 2016-09-30 10:39:14 +02:00
Jure Grabnar ed8df3cc62 Add favicon url to iframe 2016-09-29 12:19:29 +02:00
Jure Grabnar 5aea0fbb19 Refactor the rest of WOPI logic from Nejc 2016-09-28 09:33:44 +02:00
Nejc Bernot 1b260785ec First working version of office integration 
Only works on scinote-preview
 2016-09-28 09:33:44 +02:00
Nejc Bernot b2b1d5a8f5 Initial commit of WOPI integration 2016-09-28 09:33:44 +02:00
Matej Zrimšek ffe6799313 Fixed hound alerts. 2016-09-16 15:57:54 +02:00
Matej Zrimšek c2f0106993 Replaced hardcoded values with unified constants. Minor refactoring. Also front-end error handling was updated accordingly. [fixes SCI-408] 2016-09-16 15:56:44 +02:00
Matej Zrimšek 76ff34a8a9 URL presigning is now used only when using S3 file uploading (caused error for local uploading) [fixes SCI-447], along with some refactoring. 2016-09-13 18:56:47 +02:00
Matej Zrimšek 9fb30c7661 Fixes files deletion when rails worker is running [fixes SCI-411] and fixes picture's style files deletion. 2016-09-06 10:40:01 +02:00
zmagod 17aacc8ff5 fixes step destroing bug and fixes reports [fixes SCI-247] 2016-08-29 12:04:46 +02:00
Matej Zrimšek 04d9163ff6 Paperclip file spoofing corrected/modified. 2016-08-25 18:57:06 +02:00
Matej Zrimšek 4ad384df5a Fixed hound alerts. 2016-08-17 21:02:05 +02:00
Matej Zrimšek 27a9dac412 File permissions corrected, with some refactoring. 2016-08-17 18:23:24 +02:00
Matej Zrimšek e4a6a3944e Added deleting of files on S3 server when editing/removing a file. Some refactoring. 2016-08-17 18:13:35 +02:00
Matej Zrimšek 854ef0d227 Special characters caused error [fixes SCI-315]. 2016-08-17 18:10:47 +02:00
Matej Zrimšek 951cf67b3d A lot of file uploading edge cases considered. File uploading is now actually redirected to S3 server, as before was not. Error functions changed and error output format specified, which should be used consistently throughout the application. Some other refactoring. 2016-08-17 18:08:21 +02:00
Luka Murn 076b67620f Migration GitLab -> GitHub 2016-07-21 13:11:15 +02:00
Luka Murn 055298fee8 Initial commit. 2016-02-12 16:52:43 +01:00