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413 commits

Author SHA1 Message Date
ajugo ae55935002
Add missing microinteractions on step editing [SCI-7575] (#4711) 2023-01-03 12:25:22 +01:00
aignatov-bio 7437af540b
Merge pull request #4701 from okriuchykhin/ok_SCI_7516 
Add versions and access columns to protocols table, update protocol model [SCI-7516]
 2022-12-21 13:03:38 +01:00
Oleksii Kriuchykhin 5fea4722ac Add versions and access columns to protocols table, update protocol model [SCI-7516] 2022-12-19 15:39:32 +01:00
ajugo 5ab804c35a
Implement general protocol repository toolbar [SCI-7557] (#4698) 
* Implement general protocol repository toolbar [SCI-7557]

* Move protocolsio page [SCI-7557]
 2022-12-19 13:18:24 +01:00
artoscinote a3e8000360
Merge branch 'develop' into features/exposed_ids 2022-12-08 15:58:11 +01:00
Martin Artnik c828d02b99 Merge branch 'develop' into features/tiny_mce_6 2022-12-07 14:07:43 +01:00
Anton 2a8aaed7d1 Add actions toolbar to protocol repository [SCI-7521] 2022-12-06 15:54:50 +01:00
Anton fdeb22c6cd Update protocols layout [SCI-7515] 2022-12-05 14:02:13 +01:00
Anton 393bc03d47 CSS update for protocol import screen [SCI-7394] 2022-11-29 15:41:57 +01:00
Giga Chubinidze 43f8370a08 add IDs to the protocol templates tables [SCI-7179] 2022-11-22 13:55:41 +04:00
Andrej 745be5a0f7 Remove old step code [SCI-7181] 2022-10-24 13:07:10 +02:00
Martin Artnik b67bea81b8 Remove legacy protocol links [SCI-7323] 2022-10-12 11:01:16 +02:00
Andrej e05ad97498 Enable label print modal for smart annotations [SCI-7270] 2022-10-03 13:39:18 +02:00
Anton 0c596bb701 Merge branch 'develop' into features/label-templates 2022-09-15 10:40:17 +02:00
artoscinote 44b7c866b5
Move tinymce to webpacker and upgrade to v6 [SCI-7081] (#4385) 
* Move tinymce to webpacker and upgrade to v6 [SCI-7081]

* Cleanup and refactor [SCI-7081]

* Clean up legacy plugins [SCI-7150]

* Linter fix [SCI-7081]]
 2022-09-05 11:29:19 +02:00
ajugo 12fc3b0b3b
Fix protocol repository issues [SCI-7003] (#4343) 
* Fix protocol repository issues [SCI-7003]

* Remove unnecessary inRepository [SCI-7003]
 2022-08-10 15:39:45 +02:00
Anton 6131b6c0b7 Add new templates section and navigation [SCI-7017] 2022-07-26 13:53:51 +02:00
artoscinote 39f5a017cf
Add print button to protocol in repository [SCI-6871] (#4246) 2022-07-15 10:10:18 +02:00
artoscinote 765e5b99bd
Protocol editing CSS fixes [SCI-6940] (#4194) 2022-07-12 10:43:01 +02:00
Anton bf13708e31 Fix load/save protocol to repository [SCI-6759] 2022-06-27 13:14:45 +02:00
artoscinote 934023e9d8
Update print template to fit with new steps [SCI-6871] (#4153) 2022-06-10 10:41:57 +02:00
artoscinote 5c051ef8c1
Implement V2 protocols exporter [SCI-6876] (#4142) 
* Implement V2 protocols exporter [SCI-6876]

* Implement new importer [SCI-6877]
 2022-06-10 10:18:55 +02:00
aignatov-bio a8fe943658
Merge pull request #4140 from aignatov-bio/ai-sci-6868-remove-new-protocal-modal 
Remove protocol creation modal [SCI-6868]
 2022-06-05 22:41:57 +02:00
Anton 3910fa34f3 Remove protocol creation modal [SCI-6868] 2022-06-03 15:11:51 +02:00
Anton 2da1a380c3 Add view mode to protocol and step [SCI-6867] 2022-06-03 11:53:53 +02:00
Anton 61464b3780 Add new protocol view to repository [SCI-6858] 2022-06-02 11:05:25 +02:00
ajugo f75265974e
Print protocol smart annotation and table improvements [SCI-6566] (#3925) 
* Improve table printing in the print menu [SCI-6566]

* Open smart annotation in new tab for print view [SCI-6566]

* Unify naming of same parameter [SCI-6566]

* Fix typo [SCI-6566]

* Fix hound errors [SCI-6566]
 2022-03-29 12:09:33 +02:00
ajugo c570cef06c
Style corrections for printed protocol [SCI-6326] (#3782) 
* Printed protocol display improvements [SCI-6326]

* Fix new line

* Fix hound [SCI-6326]

* Using image_tag helper [SCI-6326]

* Move pictures to asset folder [SCI-6326]
 2022-01-14 15:02:04 +01:00
artoscinote 3f7f576b29
Print protocol fixes [SCI-6318] (#3717) 
* Fix smart annotations [SCI-6318]

* Fix asset rendering [SCI-6316, SCI-6417]

* Copy fix [SCI-6315]

* Fix print protocol name handling [SCI-6318]

* CSS linter fixes

* Add support for handson tables [SCI-6318]

* Use partial for handsontable formulas [SCI-6318]
 2021-12-03 13:44:18 +01:00
artoscinote 9937d1d913
Add print feature to protocols [SCI-6028] (#3700) 
* Add print feature to protocols [SCI-6028]

* Close tab after closing print dialog [SCI-6028]

* CSS linter fixes [SCI-6028]
 2021-12-01 11:16:45 +01:00
Alex Kriuchykhin 1bde37db78
Merge branch 'develop' into ok_SCI_5579 2021-10-28 13:26:27 +02:00
Oleksii Kriuchykhin c26dcf4b23 Replace empty? with blank? [SCI-5579] 2021-07-23 11:56:28 +02:00
aignatov-bio 786e74e4de
Add BioEddie integration [SCI-5654][SCI-5657][SCI-5658][SCI-5670] (#3391) 
* Add backend for bioeddie [SCI-5654]

* Add modal for bioeddie [SCI-5654]

* Add bio eddie editor to steps and results [SCI-5654]

* Fix markup and code styling
 2021-06-23 19:48:44 +02:00
Oleksii Kriuchykhin a307a16033 Fix handsontable assets inclusion in report templates [SCI-5692] 2021-05-04 16:05:19 +02:00
aignatov-bio df4297f6f7 Merge branch 'develop' into features/local_file_previews 2021-03-08 11:30:47 +01:00
aignatov-bio 89ac76a766 Fix duplcated new step button [SCI-5474] 2021-02-26 12:29:31 +01:00
Mojca Lorber 62af5cc723 [SCI-5287] Show step collapse/expand on task 2020-12-22 15:50:27 +01:00
aignatov-bio b3faa170fb
PDF preview to file preview and inline view [SCI-5299][SCI-5298] (#3018) 
* Add PDF Preview [SCI-5299]
 2020-12-22 15:25:30 +01:00
aignatov-bio c212d514d5 Fix delete asset in protocol repository 2020-11-25 13:13:06 +01:00
Mojca Lorber 8ee8f7b4d2 Expose the new step button on task 2020-11-05 16:14:40 +01:00
aignatov-bio bb983af42f
Merge pull request #2911 from aignatov-bio/ai-sci-4579-update-checkbox-style 
Update checkbox style at repository and protocol datatable [SCI-4579]
 2020-10-27 10:22:56 +01:00
aignatov-bio d6f8e156c1 Update checkbox style at repository and protocol datatable 2020-10-22 16:42:12 +02:00
Urban Rotnik aa1520bfb8 Merge branch 'develop' into jg_sci_2228 2020-10-22 14:21:39 +02:00
aignatov-bio 84682c6346
Merge pull request #2823 from mlorb/ml-sci-4575 
Replace old arrow with new one [SCI-4575]
 2020-09-09 09:05:39 +02:00
Mojca Lorber 9dac4079f8 Replace old arrow with new one and remove redundant javascript for arrow collapsing 2020-09-04 14:43:30 +02:00
Mojca Lorber 24745203e1 Fix buttons visability on protocols page according to new styleguide 2020-09-03 17:05:25 +02:00
Urban Rotnik a259800590 Merge branch 'develop' into jg_sci_2228 2020-08-31 16:29:23 +02:00
Mojca Lorber 00b668a4ba Change title size to h1 2020-07-08 13:02:47 +02:00
Urban Rotnik 9d3874e343 Add margin to keywords container 2020-05-22 14:23:03 +02:00
Urban Rotnik 1c2883414b Bring newStep top button back 2020-05-22 12:29:14 +02:00
aignatov-bio bd742d388d Small CSS improvments for mobile 2020-05-13 10:58:40 +02:00
aignatov-bio 4f941610b2 Small layout changes for protocol 2020-04-24 11:50:03 +02:00
aignatov-bio da4b55ceea Fix protocol and report create modals after dashboard redirect 2020-03-19 19:43:20 +01:00
aignatov-bio 95fca105eb Add quickstart layout and create task modal 2020-02-28 14:34:34 +01:00
Mojca Lorber 981f8678df Fix alerts style 2020-01-21 15:21:40 +01:00
aignatov-bio 68646276f5 Replace bootstrap styles for button 2020-01-07 16:13:34 +01:00
aignatov-bio ef3814ccec Add new buttons to protocols, tasks, experiments, projects 2020-01-06 10:40:20 +01:00
aignatov-bio 56ae32323c Add autosave for protocol keywords and user preferences 2019-11-20 14:57:53 +01:00
aignatov-bio b9a34fa809 Fix placeholder for authors 2019-11-15 16:23:48 +01:00
aignatov-bio a9690482d1 Add autosave feature to text fields 2019-11-12 11:26:18 +01:00
Urban Rotnik 5812ebe4d5 Add permission check for button show 
SCI-3936
 2019-09-30 14:30:03 +02:00
Anton Ignatov 0adb016293 Fix missing expand all button 2019-09-18 12:33:48 +02:00
Oleksii Kriuchykhin 973efa55e1 Merge branch 'master' into ok_SCI_3678 2019-08-08 11:17:07 +02:00
Oleksii Kriuchykhin 423528933e Switch to global JS constants [SCI-3679] 2019-08-06 15:06:19 +02:00
Urban Rotnik aa36d93bea Add additional NewStep button 2019-07-26 11:01:36 +02:00
Luka Murn 83bb89fdf5 Cherry-picked commit from ZZ (and LM)'s various changes 2019-07-26 10:13:14 +02:00
aignatov-bio 7ac410e573
Fix visual bugs across ProtocolIo [SCI-3671] (#1914) 
* Fix visual bugs across ProtocolIo
 2019-07-10 13:00:32 +02:00
mlorb 23270393b0
Merge branch 'master' into ml-sci-3634 2019-07-09 14:38:00 +02:00
Mojca Lorber 7bb82e2fc2 Fix eternal protocols tab visuals 2019-07-09 14:35:40 +02:00
Mojca Lorber 989c10872c Fixes visual bugs on protocols.io and home page 2019-07-04 18:22:51 +02:00
Jure Grabnar dc7fee51fa Add Show more protocols functionality to external protocols 
Closes SCI-3646
 2019-07-04 15:35:18 +02:00
Miha Mencin 4efb0b5a4a SCI-3645 added descending sorting by name 2019-07-02 17:42:55 +02:00
Jure Grabnar bc4b07cc0f Refactor hardcoded protocol_source in SearchService 2019-06-28 02:26:31 +02:00
Jure Grabnar 1ccabf62b3 Add preview banner in external protocols 2019-06-28 01:38:33 +02:00
Jure Grabnar d3afcbed50 Style card view on external protocols 
Closes SCI-3535
 2019-06-28 00:43:05 +02:00
Jure Grabnar 0a77cedaf8 Fix sorting of external protocols and start showing results 2019-06-27 22:48:56 +02:00
Jure Grabnar 8338892fc6 Update external protocols form to include sort_by 2019-06-27 21:26:28 +02:00
Urban Rotnik 9cb4454537 New implementation for attachments creation 2019-06-27 17:02:06 +02:00
Urban Rotnik 2761079479 Add modal for import 2019-06-27 16:46:02 +02:00
Jure Grabnar b3c3b68dc2 Add external preview to External Protocols tab 
Closes SCI-3563
 2019-06-19 22:54:20 +02:00
Jure Grabnar 7adef9cc9e Change sort buttons positions 
Closes SCI-3534
 2019-06-17 12:24:13 +02:00
Jure Grabnar d103f8ffec Finish external protocols screen 
Closes SCI-3534
 2019-06-17 12:24:12 +02:00
Jure Grabnar 0b60da9b4c Add ExternalProtocols skeleton tab 2019-06-17 12:24:12 +02:00
aignatov-bio 5081546c78
Fix padding for protocol description (#1782) 2019-05-21 10:21:30 +02:00
Oleksii Kriuchykhin 488fc99dae Fix protocol metadata editing in repository [SCI-3477] 2019-05-16 17:11:17 +02:00
aignatov-bio 71b3228310
Update protocol preview style [SCI-3416] (#1729) 
* Update protocol appearance
 2019-05-13 10:45:12 +02:00
aignatov-bio 634b58bd6a
Various UX improvements for note section [SCI-3444] (#1742) 
* Various UX improvments for note section
 2019-05-11 16:04:28 +02:00
aignatov-bio 84993ea3ef
Update protocol repository for new description format [SCI-3371] (#1689) 
* Update protocol repository for new description format

* move image clone method to concerns
 2019-04-24 13:34:56 +02:00
Urban Rotnik 11a7a975af Merge branch 'features/scinote-improvements' into master-with-note-section 2019-04-23 14:50:03 +02:00
Anton Ignatov aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
aignatov-bio 6b45dcd475
Update eln export for new tinyMCE image format (#1680) 2019-04-19 14:44:40 +02:00
aignatov-bio f47d0e2932
Merge pull request #1561 from aignatov-bio/ai-sci-3131-improve-image-file-upload 
Improve the image file upload into RTE input fields [SCI-3131]
 2019-04-10 14:04:06 +02:00
Jure Grabnar 613843d095 Temp commit 2019-04-04 16:58:55 +02:00
Jure Grabnar 26848ecaef Refactor step position + 1 into a method 2019-04-03 13:07:30 +02:00
Jure Grabnar 171b2eeedc Remove the title of protocol steps when empty 
Closes SCI-3072
 2019-03-25 09:36:56 +01:00
Anton Ignatov 4ec0a3c871 Update TinyMCE image loader for new fields 2019-03-22 10:52:26 +01:00
Anton Ignatov 07c2819163 refactoring tinymce image uploading 2019-03-20 14:46:54 +01:00
Matej Zrimšek 838455af0d Fix protocols.io Date handling at import 2019-01-12 19:28:45 +01:00
Matej Zrimšek b64df7d8cc Fix additional Date and Time display formats 2019-01-08 06:29:37 +01:00
Alex Kriuchykhin 20e2cbf0ca
Merge pull request #1391 from okriuchykhin/ok_SCI_2880 
Fix smart annotations rendering issues [SCI-2880]
 2018-11-28 09:47:20 +01:00
Alex Kriuchykhin d475197e65
Merge pull request #1396 from okriuchykhin/ok_SCI_2882 
Fix handsontable initialization [SCI-2882]
 2018-11-26 15:19:23 +01:00
Jure Grabnar 7812f70c2f
Merge pull request #1393 from jbargu/jg_2790_protocolsio_fix 
Protocols - import from protocols.io doesn't work
 2018-11-26 14:56:25 +01:00
Oleksii Kriuchykhin 2e00f1546a Fix handsontable initialization [SCI-2882] 2018-11-26 14:11:46 +01:00
Jure Grabnar 0086e4dcf3 Catch some of templates error when import protocols.io 2018-11-26 13:43:05 +01:00
Jure Grabnar 1c7a051551 Catch all errors on PIO import and show message 2018-11-23 20:47:48 +01:00
Jure Grabnar 2834edb286 Add command/subprotocol/safety for PIO 2018-11-23 20:13:34 +01:00
Jure Grabnar c00b08b101 Add sw_package and dataset component for PIO 2018-11-23 19:44:10 +01:00
Jure Grabnar 2c8a7f8eca Add last_modified evaluation for PIO import 2018-11-23 17:51:47 +01:00
Jure Grabnar 87d5e5029a Fix publish_date in PIO import 2018-11-23 17:37:26 +01:00
Jure Grabnar 76c2da4bae Add uniq tables 2018-11-23 16:30:29 +01:00
Oleksii Kriuchykhin b926cadba4 Fix smartannotations rendering issues [SCI-2880] 2018-11-23 15:07:08 +01:00
Oleksii Kriuchykhin 380a96dcce Add caching for step and result fragments [SCI-2830] 2018-11-14 11:57:53 +01:00
Zanz2 0ed62b7375 refactored according to PR review 2018-08-21 11:35:22 +02:00
Zanz2 dfcaa40f1a
Merge branch 'master' into zz_refactor_icons_sci_2445_v2 2018-08-14 13:33:43 +02:00
Zanz2 45a4c1c598 changed the icons as per last comment in jira issue 2018-08-14 13:26:48 +02:00
Oleksii Kriuchykhin 38c36ab798 Fix modals handling with Turbolinks [SCI-2253] 2018-08-02 11:25:14 +02:00
Oleksii Kriuchykhin b2bd1cb849 Upgrade to Turbolinks 5 [SCI-2253] 2018-07-27 17:26:46 +02:00
Oleksii Kriuchykhin 6669beaf0e Change icons throughout the rest of application [SCI-2445] 2018-07-27 15:27:08 +02:00
Oleksii Kriuchykhin a169639b3c Fix uploaded file max size validation in JS [SCI-2590] 2018-07-05 15:23:26 +02:00
zmagod db1944cc90 move maximum file size limit to an ENV variable [fixes SCI-2415] 2018-06-19 14:15:14 +02:00
mlorb f02363dfce fix error if user is not assigned to any teams 2018-05-25 17:14:22 +02:00
mlorb c5e62207eb fix bug with protocol preview does not open on protocols containing files 2018-05-24 11:51:27 +02:00
mlorb c4ecfc4d38 Change icons throughout sciNote - navigation, project, task cards 2018-05-22 16:55:58 +02:00
mlorb ed27a7a62a some extra restyling/unifying off app 2018-05-11 18:02:17 +02:00
mlorb 7df40e56c7 UI/UX restyle - fixes throughout application part one 2018-05-08 16:33:42 +02:00
mlorb 88d5ba369d
Merge branch 'ux-release-1' into ml-sci-2244 2018-04-26 14:07:03 +02:00
Luka Murn cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
mlorb 9e11f3b220 update buttons positions and wording throughout app 2018-04-25 13:57:12 +02:00
mlorb c08d72be36 remove breadcrumbs throughout application 2018-04-17 17:00:04 +02:00
zmagod 233e73c709 adds asset preview link to repository row modal and to table row item [fixes SCI-2110] 2018-04-10 17:06:53 +02:00
Zanz2 cff2f933a0 removed byebug :D 2018-04-04 15:19:00 +02:00
Zanz2 ec743a7420 fixed the issue 2018-04-04 15:16:31 +02:00
Oleksii Kriuchykhin 3b7977ee3b Merge latest changes from ux-release-1 [SCI-2217] 2018-04-04 14:20:34 +02:00
Zanz2 1606982966 found a hackish fix by doing a manual ajax call and some other things with jquery 2018-04-02 19:56:25 +02:00
Oleksii Kriuchykhin cc5d8550b1 Refactor file preview modal [SCI-2217] 2018-03-30 11:50:28 +02:00
mlorb 4bf9369bc5 refactor buttons 2018-03-29 13:58:14 +02:00
zmagod c46da5cc67 fixes import protocol bug for guest user [fixes SCI-2197] 2018-03-19 16:10:28 +01:00
mz3944 bb21f6543c
Merge pull request #1004 from mz3944/mz-SCI-2011 
Wrapping up the permissions [SCI-2011]
 2018-03-06 07:10:40 +01:00
Zanz2 c5728c4018
Merge branch 'master' into null_step_crash_sci2043 2018-03-05 16:37:24 +01:00
Zanz2 5c93bd9676 Tables now have fixed 200 px height, which solves various issues and the scrollbar clipping to the bottom 2018-02-16 14:14:51 +01:00
Zanz2 673901fb01
Merge pull request #984 from Zanz2/yellow_flashv3_SCI1834 
Fixed tables getting cut when certain attributes are at max length [SCI-1834]
 2018-02-16 12:52:51 +01:00
Matej Zrimšek 5bda53eebf Overall refactoring of all canaid permissions and code related to their calls. 2018-02-16 10:54:06 +01:00
Zanz2 b9db39f87d removing last commit 2018-02-16 00:00:53 +01:00
Zanz2 95501eb046 saving work for later 2018-02-15 20:01:36 +01:00
Zanz2 ad8f93b57f
Merge pull request #991 from Zanz2/missplaced_authors_sci1808 
protocols io authors are now real authors, not user that added the protocol [SCI-1808]
 2018-02-15 16:53:39 +01:00
Matej Zrimšek d6e7ef465c Grouped remaining permissions for experiment, protocol, task, and partially step levels. [SCI-1964] 2018-02-14 14:19:22 +01:00
Zanz2 128f15f984
Merge pull request #990 from Zanz2/code_formatting_sci1822 
Commands in protocols io steps are now properly formatted like code [SCI-1822]
 2018-02-08 08:52:44 +01:00
Zanz2 49a4d9cf23 Tables now no longer have huge whitespace below them, it is now fixed 300 pixels and when its too big the table gets a scrollbar 2018-02-07 15:50:42 +01:00
Zanz2 60aa1a0953 Authors are now displayed as actual authors, not the person that added the protocol, and the created at date from protocols io is in protocol info, like it was before 2018-02-07 15:12:03 +01:00
Zanz2 a6356d2420 Fixed newline styling, now code is styled in newlines, and since \n doesnt work i change it to <br> with gsub and that allows code to be written into multiple lines 2018-02-07 14:46:25 +01:00