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5337 commits 43 branches 185 tags 169 MiB
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761 commits

Author SHA1 Message Date
Jure Grabnar
93bd461a83 Generate table.csv 2018-08-29 00:31:11 +02:00
Jure Grabnar
01d48cf679 Add suffixes to all names 2018-08-29 00:21:17 +02:00
Jure Grabnar
4b0357b392 Add export of Inventories and their assets 2018-08-28 23:22:55 +02:00
Oleksii Kriuchykhin
c86063f79e Fix failing tests [SCI-2688] 2018-08-24 15:48:49 +02:00
Oleksii Kriuchykhin
c8efa4bffc Add SHOW, UPDATE and DELETE inventory item endpoints [SCI-2688][SCI-2689] 2018-08-24 15:48:49 +02:00
Oleksii Kriuchykhin
490376513b Add inventory item CREATE endpoint [SCI-2687] 2018-08-24 15:36:19 +02:00
Oleksii Kriuchykhin
c8abb3d9b8 Add user_identities CRUD endpoints, make API V1 togglable [SCI-2664][SCI-2686] 2018-08-24 15:27:59 +02:00
Jure Grabnar
295c6a9432 Add export all functionality (basic skeleton) 2018-08-21 21:07:45 +02:00
Zanz2
beb1d02914 Made fiew part for toggler, now debugging why checkbox doenst render properly and why it defaults to false always 2018-08-20 15:57:09 +02:00
Oleksii Kriuchykhin
ecde634a2c Add OAuth2 provider [SCI-2515] 2018-08-17 13:17:59 +02:00
Oleksii Kriuchykhin
6c59e1e159 Fix failing tests [SCI-2614][SCI-2616][SCI-2617] 2018-08-08 17:01:49 +02:00
Oleksii Kriuchykhin
8d11e03d47 Add read inventories and inventory items endpoints [SCI-2614][SCI-2616][SCI-2617] 2018-08-08 17:01:49 +02:00
okriuchykhin
3503eb775b
Merge pull request #1254 from okriuchykhin/ok_SCI_2601 
Fix files search results display [SCI-2601]
 2018-08-02 11:53:02 +02:00
Oleksii Kriuchykhin
563005cf89 Fix files search results display [SCI-2601] 2018-07-26 09:55:18 +02:00
Oleksii Kriuchykhin
0e372af729 Adds API authentication with Azure AD [SCI-2608] 2018-07-24 14:21:33 +02:00
Zanz2
887ddbfce3
Merge pull request #1229 from Zanz2/unify_match_case_sci1324 
Fix protocol names are case insensitive unique [SCI-1324]
 2018-07-17 08:22:03 +02:00
zmagod
e654725d9e fixes smart annotation serch queries/dropdown item picker [fixes SCI-2511] 2018-07-06 14:26:20 +02:00
Zanz2
8e42dba7de Found the fix 2018-07-03 08:20:56 +02:00
zmagod
db1944cc90 move maximum file size limit to an ENV variable [fixes SCI-2415] 2018-06-19 14:15:14 +02:00
zmagod
ed39294733 removes duplicated keywords [fixes SCI-2294] 2018-06-18 12:15:52 +02:00
Oleksii Kriuchykhin
e10ed86fa1 Remove result validation [SCI-2376] 2018-06-13 14:06:55 +02:00
zmagod
f8ac083d39 adds an additional check if some other user has added/removed repository columns [fixes SCI-2408] 2018-06-12 15:28:03 +02:00
Zmago Devetak
eff68aead8
Merge pull request #1193 from ZmagoD/zd_SCI_2481_ 
fixes project validation message [fixes SCI-2481]
 2018-06-08 14:40:27 +02:00
Zmago Devetak
74ccaf06b9
Merge pull request #1184 from ZmagoD/zd_SCI_2417 
adds asset_text_data to global search options
 2018-06-08 14:30:52 +02:00
zmagod
11ebea573a fixes project validation message [fixes SCI-2481] 2018-06-07 16:42:11 +02:00
zmagod
2def874ffd fixes project duplication [fixes SCI-2486] 2018-06-05 09:44:03 +02:00
Oleksii Kriuchykhin
8de0e282e3 Fix project_tree for non admin users [SCI-2478] 2018-06-01 16:38:49 +02:00
Oleksii Kriuchykhin
2ddc0fb561 Improve sidebar rendering performance [SCI-2478] 2018-06-01 13:49:02 +02:00
zmagod
3da098cb60 fixes the issue with extraction of text from file [fixes SCI-2417] 2018-05-31 09:42:57 +02:00
Luka Murn
68f5a6bebd Fix inventory rows without files not being saved bug 
Closes SCI-2471.
 2018-05-30 14:41:20 +02:00
Oleksii Kriuchykhin
6cf9149baa Add user id tracking when discarding repository [SCI-2462] 2018-05-29 15:33:02 +02:00
Zmago Devetak
147e74b4a5
Merge pull request #1164 from ZmagoD/zd_SCI_2448 
adds discard gem, move deletion of repositories in a rake task to run…
 2018-05-28 15:04:54 +02:00
zmagod
bbbe06e491 fixes reports index for guest users 2018-05-24 15:28:54 +02:00
zmagod
1f8db7bc49 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2340 2018-05-24 15:00:59 +02:00
zmagod
b13e39a0d9 adds discard gem, move deletion of repositories in a rake task to run in background worker [fixes SCI-2448] 2018-05-24 14:39:25 +02:00
zmagod
ba2aafae39 fix access to public reports [fixes SCI-2340] 2018-05-21 14:45:18 +02:00
Zmago Devetak
2ac04ee476
Merge pull request #1150 from ZmagoD/zd_SCI_2426 
migrations that fixes the bug with smart annotations [fixes SCI-2426]
 2018-05-21 14:15:47 +02:00
zmagod
b8098093ee migrations that fixes the bug with smart annotations [fixes SCI-2426] 2018-05-18 13:57:52 +02:00
Luka Murn
5e90ae7383 Remove uneccesary save when setting notification settings on user 
These methods should behave as the rest of setters on
ActiveRecords, ergo setting the model state, but not saving it.

The save is called at the end of the action inside the controller
anyway, so this save is redundant.
 2018-05-18 13:43:04 +02:00
zmagod
b125863baf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2371 2018-05-17 11:25:33 +02:00
zmagod
ca0c8cbb71 fixes typos, fixes pdf rendering 2018-05-17 11:21:34 +02:00
zmagod
4573655ec8 adds save PDF report to inventory feature [fixes SCI-2371] 2018-05-16 09:31:19 +02:00
Oleksii Kriuchykhin
39d594b0da Disable some validations in repository import to improve speed [SCI-2404] 2018-05-15 11:14:43 +02:00
Zmago Devetak
0a4deeaa35
Merge pull request #1112 from ZmagoD/zd_SCI_2261 
propagate assigned repository items in workflow [fixes SCI-2261]
 2018-05-10 09:57:49 +02:00
Zmago Devetak
d744f24b85
Merge pull request #1118 from ZmagoD/zd_SCI_2323 
sign_out user after 7 days [fixes SCI-2323]
 2018-05-03 14:36:44 +02:00
Zmago Devetak
19d5c687ef
remove unneeded :rememberable module 2018-05-03 14:35:59 +02:00
Zmago Devetak
4fe4fea4fc
Merge pull request #1122 from ZmagoD/zd_SCI_2339 
repository when sorting/searching bug fix [SCI-2339]
 2018-05-03 12:05:39 +02:00
zmagod
0584453575 fixes per @okriuchykhin 's request 2018-04-26 17:18:03 +02:00
zmagod
8dac887f10 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2261 2018-04-26 14:18:41 +02:00
zmagod
24acd5c779 fixes per @duco 's request 2018-04-26 14:13:46 +02:00
Luka Murn
cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
zmagod
23f8f35a2c a shotgun surgery that fixes searching/filtering of repository_rows [fixes SCI-2339] 2018-04-26 11:05:02 +02:00
Luka Murn
cd04596c62
Merge pull request #1111 from Ducz0r/lm-sci-2276-fix 
Update the code for repository table states so it (hopefully) causes less errors [SCI-2276]
 2018-04-25 12:37:27 +02:00
zmagod
199a2a23bf fixes per @mlorb 's request 2018-04-23 12:26:21 +02:00
Luka Murn
d023db16af Update the destroy_column action so it properly updates all states 2018-04-20 12:31:22 +02:00
Luka Murn
21e7e7057e Refactor all the methods into two new services 2018-04-20 12:31:22 +02:00
Luka Murn
d8ca42aa0c Refactor repository_table_state and its class methods 2018-04-20 12:31:22 +02:00
Luka Murn
5e2622ecfc Change default repository state to Ruby representation 
Also remove some dead code from repositories datatables
 2018-04-20 12:31:22 +02:00
zmagod
c23eacfe13 fixes for_admin action/ test visible_by functlion 2018-04-19 12:41:00 +02:00
zmagod
9d282d1800 adds new reports index page [fixes SCI-2124] 2018-04-18 16:47:52 +02:00
Luka Murn
9bf8b5d864 Merge branch 'ok_SCI_1860' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_1860 
Conflicts:
	Makefile
	app/assets/javascripts/projects/index.js.erb
	app/assets/stylesheets/themes/scinote.scss
	config/locales/en.yml
 2018-04-12 13:16:46 +02:00
zmagod
024032faff refactor update protocol keywords action [fixes SCI-2257] 2018-04-06 15:41:50 +02:00
zmagod
6e255a4657 fixes failing specs 2018-04-04 14:44:32 +02:00
zmagod
e630d3113f add ID column to repository [fixes SCI-2206] 2018-04-04 11:55:11 +02:00
Oleksii Kriuchykhin
e42fc3117b Implement search in file repository cells and improve performance [SCI-2111] 2018-03-26 13:19:09 +02:00
Zmago Devetak
75d7ace8c7
Merge pull request #1017 from ZmagoD/zd_SCI_2068 
Write server-side endpoints for custom repositories [SCI-2068]
 2018-03-20 14:30:47 +01:00
okriuchykhin
d906baff61
Merge pull request #1039 from okriuchykhin/ok_SCI_1697 
Improve connections between repository models [SCI-1697]
 2018-03-19 16:42:55 +01:00
Oleksii Kriuchykhin
a105e61d48 Remove tutorial [SCI-1860] 2018-03-18 13:18:05 +01:00
Oleksii Kriuchykhin
9371d77762 Improve connections between repository models [SCI-1697] 2018-03-16 13:12:33 +01:00
zmagod
fad4001273 fix edit row action 2018-03-16 12:27:19 +01:00
Oleksii Kriuchykhin
27a605d974 Fix failing test [SCI-2148][SCI-2149] 2018-03-16 11:05:38 +01:00
zmagod
1cdba5e0d3 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2068 2018-03-16 11:05:16 +01:00
zmagod
d69754af04 implement search on list items dropdown, update, create actions [fixes SCI-2070] 2018-03-15 15:43:16 +01:00
zmagod
b67a54e2d1 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2024_fix_custom_repositores_import 2018-03-13 15:25:57 +01:00
okriuchykhin
503617b42c
Merge branch 'samples_to_repositories_table_migration' into zd_SCI_2025 2018-03-13 14:44:20 +01:00
zmagod
dd2f7dd417 Merge branch 'master' of https://github.com/biosistemika/scinote-web into samples_to_repositories_table_migration 2018-03-13 13:24:36 +01:00
Oleksii Kriuchykhin
269f7d74fa Add explicit ordering to samples_tables [SCI-2148][SCI-2149] 2018-03-13 13:16:34 +01:00
okriuchykhin
262c21d145
Merge pull request #1036 from okriuchykhin/ok_SCI_2078 
Implement importable selector for repository columns [SCI-2078]
 2018-03-13 13:14:53 +01:00
Oleksii Kriuchykhin
be1ead22e0 Implement importable selector for repository columns [SCI-2078] 2018-03-13 11:36:05 +01:00
Oleksii Kriuchykhin
21c07371c9 Fix repository export to support file columns [SCI-2079] 2018-03-13 10:40:27 +01:00
mlorb
34f5c2c7ac fix validation in asset model and change formatted method in repository_asset_value model 2018-03-12 10:50:45 +01:00
mlorb
64e26e1c60 add file custom column type to db 2018-03-09 17:04:54 +01:00
Oleksii Kriuchykhin
e4d974aa58 Add uniqueness validation for SamplesTable [SCI-2148][SCI-2149] 2018-03-09 15:34:06 +01:00
zmagod
4f951f6679 adds unit specs for datatable service [fixes SCI-2068] 2018-03-09 14:22:00 +01:00
Oleksii Kriuchykhin
1765d83cd1 Refactor search to support repository list items [SCI-2108] 2018-03-09 11:05:43 +01:00
zmagod
26883af386 fix assigned ordering 2018-03-08 17:36:10 +01:00
zmagod
fb66131e29 setup endpoint for repository_rows paging/search 2018-03-06 16:32:39 +01:00
mz3944
bb21f6543c
Merge pull request #1004 from mz3944/mz-SCI-2011 
Wrapping up the permissions [SCI-2011]
 2018-03-06 07:10:40 +01:00
zmagod
fca01bd54f refactor repository export [fixes SCI-2025] 2018-03-05 15:54:04 +01:00
Zmago Devetak
50ccec5007
Merge pull request #1009 from ZmagoD/zd_SCI_2066 
add info modal for repository items [fixes SCI-2066]
 2018-03-05 12:49:29 +01:00
zmagod
0996745781 refactor repository import, adds RepositoryListType as an option and makes the import class more extensible [fixes SCI-2024] 2018-03-02 13:39:22 +01:00
mlorb
08439e7f58 sign up with linkedIn account 2018-02-28 18:12:21 +01:00
Matej Zrimšek
b8b9707c06 Fixed protocol and archive permission calls, fixed result permissions; module group managing is now also allowed on newly created groups; other permission call fixes and some refactoring. 2018-02-19 14:51:14 +01:00
Matej Zrimšek
321ddc2916 Grouped existing project permissions and used 'canaid' gem. 2018-02-14 13:09:45 +01:00
zmagod
36595d33f4 fix name scope 2018-02-12 09:09:56 +01:00
zmagod
d12f8403e4 add reference to repository column 2018-02-12 09:05:41 +01:00
zmagod
ae99c92516 follow @okriuchykhin 's suggestions 2018-02-09 16:28:21 +01:00
zmagod
557aeca049 refactor relations 2018-02-09 14:11:56 +01:00
zmagod
7c13c5a1f4 fixes typo, follows @okriuchykhin 's suggestions 2018-02-09 11:38:52 +01:00
zmagod
6b7ff11bcf setup models for repository list column [fixes SCI-2015] 2018-02-07 15:28:28 +01:00
Oleksii Kriuchykhin
16e1d072b9 Improve files handling in protocol clonning [SCI-2003] 2018-02-01 15:44:08 +01:00
mlorb
775b8b3201 fix bug with ajax error caused to the other user when deleting column in custom repository 2018-01-29 16:01:33 +01:00
zmagod
f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
Oleksii Kriuchykhin
819febb05b Remove skip_on_import from repository_cell [SCI-1939] 2018-01-17 12:54:32 +01:00
Oleksii Kriuchykhin
a64012237e Fix repository records import [SCI-1939] 2018-01-15 18:01:35 +01:00
Oleksii Kriuchykhin
2ddb0ea009 Improve XLSX parsing with Roo [SCI-1915] 2018-01-11 17:52:57 +01:00
zmagod
862b73cae7 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1866 2018-01-05 09:13:43 +01:00
okriuchykhin
e49ffb61d4
Merge pull request #914 from okriuchykhin/ok_SCI_1873 
Fix repositories [SCI-1873]
 2018-01-04 13:33:30 +01:00
Oleksii Kriuchykhin
66869fe4cf Fix canvas update [SCI-1871] 2017-12-20 11:44:11 +01:00
Oleksii Kriuchykhin
512ee07bde Fix repositories [SCI-1873] 2017-12-19 17:53:45 +01:00
Luka Murn
cf291bf887 Merge branch 'gilson-iot-rails4' 
Conflicts:
	Gemfile.lock
 2017-12-19 10:56:39 +01:00
zmagod
219ef3baf6 setup new pagination for activities 2017-12-14 14:02:40 +01:00
Oleksii Kriuchykhin
6256acdfea Rename notifications settings accessor [SCI-1864] 2017-12-07 13:59:33 +01:00
Zmago Devetak
027f4a5921
Merge pull request #890 from ZmagoD/zd_SCI_1651 
export and import RTE images
 2017-11-24 16:28:28 +01:00
Zmago Devetak
3cd7e6fdde
fix open method 2017-11-24 15:19:58 +01:00
mlorb
9e7b75a880
Merge pull request #892 from mlorb/ml-sci-1215_v2 
Make background gray for paperclip images [SCI-1215]
 2017-11-23 17:32:09 +01:00
Mojca Lorber
0ffe476a54 make background gray for paperclip images 2017-11-23 14:35:42 +01:00
Luka Murn
00fe267a2a Minor codestyle fixes 2017-11-23 11:33:39 +01:00
Mojca Lorber
fe5828fa97 add copying of TinyMce assets when cloning the protocol 2017-11-22 16:47:21 +01:00
zmagod
91fec89cab adds tiny_mce_assets to protocol export 2017-11-21 16:30:48 +01:00
Luka Murn
d715eb06ef Add team & project role-related helper functions to User model 
This will be required later once we start using Canaid.
 2017-11-16 15:50:30 +01:00
Oleksii Kriuchykhin
f202687291 Allow import of the sample with missing non mandatory fields [SCI-1819] 2017-11-15 16:40:14 +01:00
Oleksii Kriuchykhin
84f4aba213 Pull latest master into gilson-iot-rails4 2017-11-15 15:15:26 +01:00
Mojca Lorber
f75a2710d5 fix preview for images with transparent background 2017-11-13 18:03:14 +01:00
zmagod
e0b6683a44 create view directory per @Ducz0r 's request 2017-11-09 10:06:53 +01:00
zmagod
e0323a0a46 fixes failing tests 2017-10-27 09:35:39 +02:00
zmagod
3d22a5404d add scenic gem, teams datatables sql view 2017-10-26 16:59:00 +02:00
Luka Murn
82f982e983 Merge branch 'rails-5.1' into decoupling-settings-page 
Conflicts:
	Gemfile
	Gemfile.lock
 2017-10-23 10:59:10 +02:00
Luka Murn
6c2c5aff17 Additional fixes required by latest merge from master 2017-10-23 09:51:13 +02:00
Luka Murn
8254153bb9 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile
	Gemfile.lock
	app/models/connection.rb
	app/models/experiment.rb
	app/models/my_module.rb
 2017-10-23 08:57:57 +02:00
okriuchykhin
8e90e041b9 Merge pull request #825 from okriuchykhin/ok_SCI_1665 
Optimize memory usage in samples/repositories import [SCI-1665]
 2017-10-17 17:26:00 +02:00
Oleksii Kriuchykhin
c8d2ae70fa Move duplicated code to service [SCI-1665] 2017-10-17 14:46:16 +02:00
zmagod
6fe48a07ae fix hound, add custom hook for webpacker:compile 2017-10-16 17:02:35 +02:00
zmagod
c5978f2d86 adds cucumber test for profile page [fixes SCI-1572] 2017-10-16 16:21:52 +02:00
Oleksii Kriuchykhin
d266034406 Use case insensitive sample types and groups in import [SCI-1689] 2017-10-13 17:15:51 +02:00
Oleksii Kriuchykhin
56f52ebfa7 Optimize memory usage in samples/repositories import [SCI-1665] 2017-10-12 14:43:25 +02:00
Oleksii Kriuchykhin
9a8e33c6d7 Small fixes [SCI-1642] 2017-10-11 17:24:31 +02:00
Oleksii Kriuchykhin
6820511ea0 Further canvas optimizations [SCI-1642] 2017-10-06 12:43:27 +02:00
Oleksii Kriuchykhin
b26b963e54 Optimize update canvas SQL and remove module group name [SCI-1642] 2017-10-05 16:19:25 +02:00
zmagod
c20f0c2d8a fixes user_controller specs, adds user model specs for settings 2017-10-05 15:53:05 +02:00
zmagod
a020e23286 follow suggestions of @Ducz0r 2017-10-05 13:56:56 +02:00
zmagod
cb4bacc372 refactor preferences page [fixes SCI-1564] 2017-09-28 16:53:51 +02:00
zmagod
c8c8afdd1d update react-bootstrap 2017-09-28 15:00:54 +02:00
zmagod
26b526d61b adds getter and setters for user settings 2017-09-27 14:38:52 +02:00
zmagod
e2aa0d7515 fixes user profile 2017-09-26 17:29:11 +02:00
Luka Murn
e078ae4f77 Merge branch 'rails-5.1' into decoupling-settings-page 2017-09-21 08:36:09 +02:00
Luka Murn
beae1b05d8 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile
	Gemfile.lock
 2017-09-21 08:27:38 +02:00
Mojca Lorber
0e14420193 fix bugs with importing samples 2017-09-06 14:41:14 +02:00
zmagod
9c01ab414c refactor leave team 2017-09-01 17:10:43 +02:00
Oleksii Kriuchykhin
fc0e2d2172 Add validation for uid uniqness [GIOT-29] 2017-09-01 17:00:13 +02:00
Oleksii Kriuchykhin
c3fceb90df Backport API to Rails-4 [SCI-1579] 2017-08-30 13:30:41 +02:00
zmagod
478bd491ff added pagination and sorting to team tables 2017-08-28 17:05:09 +02:00
zmagod
db16da7bd6 adds custom query to fetch teams data 2017-08-25 16:07:37 +02:00
zmagod
c5e32c4ea0 Merge branch 'rails-5.1' of https://github.com/biosistemika/scinote-web into merge-rails-5.1-branch 2017-08-21 09:52:14 +02:00
Luka Murn
ec7b7ffe08 You are my sunshine, my only sunshine, 
You make me happy when skies are grey
You never know, Hound, how much I love you
Please don't take my Hound away
 2017-08-10 14:42:58 +02:00
Luka Murn
9227ea5854 Finish the user settings jsonb, also fix references throughout app 
Closes SCI-1475.
 2017-08-10 14:29:01 +02:00
Luka Murn
c62002381b Add default settings migration and concern 2017-08-10 11:30:57 +02:00
Zmago Devetak
4be39a8580 Merge pull request #762 from ZmagoD/zd_SCI_1493 
Copy navbar to React
 2017-08-07 14:07:55 +02:00
Luka Murn
ae5bccf709 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile.lock
	app/datatables/repository_datatable.rb
	app/models/repository_cell.rb
 2017-08-07 08:45:53 +02:00
zmagod
c314bae28d add team switch js/controller 2017-08-03 16:03:15 +02:00
zmagod
b69ec22dfe fixes failing tests [fixes SCI-1470] 2017-07-28 10:14:50 +02:00
zmagod
416ab8eee3 Merge branch 'rails-5.1' of https://github.com/biosistemika/scinote-web into zd_SCI_1400 2017-07-26 16:20:09 +02:00
Oleksii Kriuchykhin
6a43483a2f Fix adding and editing repository items [SCI-1519] 2017-07-26 11:22:26 +02:00
Oleksii Kriuchykhin
efd03db6db Further samples import improvement [SCI-101] 2017-07-25 10:56:07 +02:00
Oleksii Kriuchykhin
67b0c78593 Improve samples import speed [SCI-101] 2017-07-24 17:33:13 +02:00
Oleksii Kriuchykhin
6d56e6b72e Remove redundant self [SCI-1487] 2017-07-20 11:51:42 +02:00
Oleksii Kriuchykhin
6c33b46f6a Improve import of repository records plus tsv file import fixes [SCI-1487] 2017-07-20 11:44:10 +02:00
Oleksii Kriuchykhin
ece27b2652 Fix importing files with empty header cells and error messages improvements [SCI-1484] 2017-07-18 14:54:35 +02:00
Nbernot
d746ae2549 Removes parentheses around if conditions 2017-07-11 13:33:47 +02:00
Luka Murn
9f60ece25f Merge branch 'master' into rails-5.1 
Conflicts:
	app/models/repository.rb
	app/models/repository_row.rb
	app/views/projects/index.html.erb
	app/views/shared/_secondary_navigation.html.erb
 2017-07-06 15:12:15 +02:00
zmagod
750c82a80f setup testing tools [fixes SCI-1400] 2017-07-06 09:07:05 +02:00
Nejc Bernot
803934e07d Changes the host for the download and redirect paths 2017-07-05 10:23:10 +02:00
Nejc Bernot
91fe7fe4ad Changes the completely NOT ruby code 2017-07-04 17:13:59 +02:00
Luka Murn
e3b9c1c644 Woops, almost forgot on this one 2017-07-04 15:00:14 +02:00
Luka Murn
8d68769d09 Hound is Love, Hound is Life 2017-07-04 14:47:58 +02:00
Luka Murn
91cddce8a6 Fixes DEPRECATION WARNING-s for Rails 5.1.2 
This just fixes the warning messages occured during click-through
of the application. I didn't systematically search code for all
potential problems (I couldn't find the list of all deprecations
anyway).

Closes SCI-1427.
 2017-07-04 14:35:51 +02:00
Nejc Bernot
bd9904adb3 Adds support for business servers 
If the WOPI_BUSINESS_USERS environmental variable is set and true, indicates to Office online that all users are business users when trying to view/edit files
 2017-07-04 14:27:43 +02:00
Zmago Devetak
5f4006fe4a Merge pull request #723 from ZmagoD/zd_SCI_1408 
Fixes bugs on canvas [fixes SCI-1408]
 2017-07-04 11:16:04 +02:00
okriuchykhin
75c887ce7d Merge pull request #721 from okriuchykhin/ok_SCI_1412 
Fix activities [SCI-1412]
 2017-07-04 10:59:08 +02:00
Oleksii Kriuchykhin
b234c07c13 Fix datatables [SCI-1409] 2017-07-03 15:33:50 +02:00
zmagod
311270ff49 refactor 2017-07-03 15:32:02 +02:00
zmagod
fd13921720 fixes repeat tutorial [fixes SCI-1410] 2017-06-29 11:00:50 +02:00
zmagod
bef5a085c4 Fixes bugs on canvas [fixes SCI-1408] 2017-06-29 10:29:41 +02:00
Oleksii Kriuchykhin
e474cda03a Fix activities [SCI-1412] 2017-06-28 16:49:50 +02:00
Zmago Devetak
502eb5c211 fixes tabs 2017-06-28 15:40:15 +02:00
zmagod
d8a3fdea20 fixes hound 2017-06-28 15:29:10 +02:00
zmagod
525c9770ac fixes experiment page [fixes SCI-1395] 2017-06-28 15:21:32 +02:00
zmagod
71aa05bb0e refactor 2017-06-27 14:58:49 +02:00
okriuchykhin
d126391940 Merge pull request #710 from okriuchykhin/ok_SCI_1356 
Add global search in custom repositories [SCI-1356]
 2017-06-27 13:41:53 +02:00
Oleksii Kriuchykhin
f2f57de264 Fix changing protocol ownership logic when removing user from the team [SCI-1415] 2017-06-26 15:30:18 +02:00
Oleksii Kriuchykhin
e038bc58fa Add global search in custom repositories [SCI-1356] 2017-06-23 16:12:56 +02:00
zmagod
819f47b450 setup sciNote for Rails 5.1 2017-06-23 15:19:08 +02:00
zmagod
703be13fb0 removes imported repository row if the row value is not valid [fixes SCI-1393] 2017-06-22 15:21:36 +02:00
zmagod
28129ebb73 refactor 2017-06-21 17:39:20 +02:00
zmagod
bad52ceff1 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1336 2017-06-21 15:56:07 +02:00
zmagod
18fd5b00ba fix hound 2017-06-21 15:01:55 +02:00
zmagod
f66fb49b56 adds import records to repositories [fixes SCI-1336] 2017-06-21 14:45:50 +02:00
zmagod
f64e1ac713 fix locales 2017-06-21 09:31:39 +02:00
Matej Zrimšek
6c7987681c Updating repository table state of every user belonging to the team of the repository, when custom column is removed or added. [SCI-1384] 2017-06-20 14:52:41 +02:00
zmagod
70fa681519 split the import service 2017-06-19 14:05:37 +02:00
Zmago Devetak
21577cd0e9 Merge pull request #664 from ZmagoD/zd_SCI_1315 
removes the delete function of uncompleted steps [fixes SCI-1315]
 2017-06-13 09:32:26 +02:00
zmagod
a865253a2e first run 2017-06-13 08:10:10 +02:00
Matej Zrimšek
e3db79b3cc Added repository permissions check when exporting repository records. Minor repositories refactoring and code style fixing. [SCI-1275] 2017-06-12 17:49:42 +02:00
Matej Zrimšek
4ea8972a6c Fixed rebasing mistake. [SCI-1275] 2017-06-09 19:48:20 +02:00
rekonder
ede744849b Export repository [aj-SCI-1275] 2017-06-09 19:44:28 +02:00
Luka Murn
e26337d5ee Merge pull request #671 from biosistemika/custom-repositories 
Merge custom-repositories into master
 2017-06-09 18:46:47 +02:00
zmagod
5f8606c9c5 removes the delete function of uncompleted steps [fixes SCI-1315] 2017-06-08 14:03:06 +02:00
Luka Murn
810599bef2 Fix en.yml localization bug 2017-06-08 13:36:37 +02:00
Luka Murn
2ab31aba2f Merge pull request #660 from Ducz0r/lm-sci-1270 
Copy repository functionality [SCI-1270]
 2017-06-08 11:45:57 +02:00
Luka Murn
61eb52f86f Implement GUI for copying repositories 
Closes SCI.1270.
 2017-06-07 19:11:25 +02:00
Luka Murn
b94d2c5c03 Implement 'copy' method on Repository object 2017-06-07 18:28:07 +02:00
Luka Murn
42f7b4f68d Hound is love, Hound is life 2017-06-07 18:22:15 +02:00
Luka Murn
9e45d197df Change some stuff for repos to work, fix some bugs 
Closes SCI-1279.
 2017-06-07 18:07:49 +02:00
Luka Murn
02dd6636ba Allow saving & editing of reports with repository elements 
Closes SCI-1279.
 2017-06-07 16:55:00 +02:00
Luka Murn
b5f6d1da94 Allow custom repositories to be added to reports 2017-06-07 16:54:32 +02:00
Luka Murn
bb20d2661f Add association between repository rows & my modules 2017-06-07 16:54:32 +02:00
Oleksii Kriuchykhin
ad8dd6d740 PR fixes [SCI-1274] 2017-06-07 15:23:25 +02:00
Oleksii Kriuchykhin
8b1190060e Add custom repository table [SCI-1274] 2017-06-07 15:23:25 +02:00
Matej Zrimšek
5aba15e220 Made repository names case insensitive. [fix 1269] 2017-06-05 10:38:04 +02:00
zmagod
b527afd12b generates samples csv file in background job [fixes SCI-1278] 2017-05-29 14:42:55 +02:00
Oleksii Kriuchykhin
e99e3edb7b Add repositories dropdown to task navigation [SCI-1273] 2017-05-18 14:21:00 +02:00
Oleksii Kriuchykhin
85e81e9ea2 Improve repository models and migration [SCI-1267] 2017-05-17 10:04:07 +02:00
Oleksii Kriuchykhin
0dc0c7d096 Add validation of text_value length [SCI-1267] 2017-05-16 15:57:21 +02:00
Oleksii Kriuchykhin
72a651c7de Add migrations and models for custom repositories [SCI-1267] 2017-05-16 15:27:36 +02:00
okriuchykhin
8e523782d9 Merge pull request #619 from okriuchykhin/ok_SCI_617 
Fixes error when cloning experiments with long names [SCI-617]
 2017-05-12 16:53:38 +02:00
okriuchykhin
a8bbc3c3ba Merge pull request #615 from okriuchykhin/ok_SCI_1008 
Fix task and step ordering in reports [SCI-1008]
 2017-05-12 16:44:57 +02:00
Oleksii Kriuchykhin
79efb34191 Fixes error when clonning experiments with long names [SCI-617] 2017-05-12 11:07:11 +02:00
Oleksii Kriuchykhin
bb8c7c342c Add additional info to samples info modal [SCI-960] 2017-05-11 22:20:06 +02:00
Oleksii Kriuchykhin
5d55720aad Fix steps ordering in reports [SCI-1008] 2017-05-11 15:56:33 +02:00
Zmago Devetak
9911c0d148 Merge pull request #613 from ZmagoD/zd_SCI_1241_v3 
replace all ActionController::Base.helpers.sanitize calls with custom…
 2017-05-11 14:30:26 +02:00
zmagod
80a0af8c9f replace all ActionController::Base.helpers.sanitize calls with custom sanitize_input method [fixes SCI-1241] 2017-05-11 11:36:47 +02:00
Oleksii Kriuchykhin
a5926726ce Add notifications counter badge to project card [SCI-1253] 2017-05-10 17:28:37 +02:00
zmagod
2081e0a94b Merge branch 'master' of https://github.com/biosistemika/scinote-web into release-1.10.1 2017-05-10 15:14:17 +02:00
Zmago Devetak
ff0f85fce8 Merge pull request #592 from ZmagoD/zd_SCI_160 
removes TempFile after 7 days [fixes SCI-160]
 2017-05-10 09:32:18 +02:00
zmagod
04ee24d553 refactor 2017-05-09 14:05:21 +02:00
zmagod
2d69896897 fixes pdf export and image size [fixes SCI-1247] 2017-05-09 13:59:59 +02:00
okriuchykhin
ccc640f2bc Merge pull request #593 from okriuchykhin/ok_SCI_1158 
Add advanced search options [SCI-1158]
 2017-05-09 10:23:34 +02:00
Oleksii Kriuchykhin
bd5a48b9c8 Improve code style [SCI-1158] 2017-05-08 18:00:14 +02:00
Zmago Devetak
4b816f5322 Merge pull request #568 from ZmagoD/zd_SCI_1119 
Add images to fields with rich text formatting
 2017-05-08 13:06:58 +02:00
Oleksii Kriuchykhin
a3f847a232 Fix hound [SCI-1158] 2017-05-08 10:22:54 +02:00
Oleksii Kriuchykhin
0ee7e11620 Add advanced search options [SCI-1158] 2017-05-05 16:41:23 +02:00
zmagod
f079a097c5 removes TempFile after 7 days [fixes SCI-160] 2017-05-05 14:54:22 +02:00
zmagod
8d0c22327b adds asc order to checklists [fixes SCI-1228] 2017-05-04 15:17:34 +02:00
zmagod
acc5594f1b add popup for approval to complete the Task [fixes SCI-1200] 2017-05-04 12:41:22 +02:00
okriuchykhin
5ec41c0d0a Merge pull request #576 from okriuchykhin/ok_SCI_763 
Add additional sanitization to search parameters in datatables [SCI-763]
 2017-04-26 13:44:15 +02:00
zmagod
0e383109a1 refactor query 2017-04-26 13:32:03 +02:00
Oleksii Kriuchykhin
9055894d07 Add additional sanitization to search parameters in datatables [SCI-763] 2017-04-25 17:37:42 +02:00
zmagod
615bbb9967 make search for users case insensitive [fixes SCI-1192] 2017-04-25 15:33:51 +02:00
Luka Murn
92159b734f Merge pull request #559 from Ducz0r/lm-sci-1175-fix 
Fix encoding when cloning tables [SCI-1175]
 2017-04-25 14:38:34 +02:00
zmagod
ed24448817 adds relation to team, adds rake task to delete obsolete images [fixes SCI-1203] 2017-04-25 14:24:05 +02:00