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569 commits

Author SHA1 Message Date
Oleksii Kriuchykhin
73be1181ac Fix failing tests for repository states [SCI-4070] 2019-11-29 10:19:05 +01:00
Oleksii Kriuchykhin
338b710d81 Refactor inventory edit mode [SCI-4070] 2019-11-29 10:19:05 +01:00
Mojca Lorber
9d4796cf90 refactor repository column javascript 2019-11-29 10:17:44 +01:00
Urban Rotnik
c00a837105 Add models for RepositoryStatus column type 2019-11-29 10:16:43 +01:00
Oleksii Kriuchykhin
f5abb7c767 Add connected accounts section to settings [SCI-4106] 2019-11-27 23:16:25 +01:00
aignatov-bio
68284c10da Add task description and task protocol description activities 2019-11-27 14:37:53 +01:00
Oleksii Kriuchykhin
6b20a10473 Refactor Azure configuration [SCI-4098] 2019-11-26 15:09:40 +01:00
aignatov-bio
56ae32323c Add autosave for protocol keywords and user preferences 2019-11-20 14:57:53 +01:00
Anton Ignatov
fc70ce24f8 Refactor side filters for global activities 2019-11-18 13:59:54 +01:00
Oleksii Kriuchykhin
ab691efdb2 Fix LinkedIn sign-up [SCI-4047] 2019-10-29 16:20:19 +01:00
Alex Kriuchykhin
16dc2d0fe0
Merge pull request #2130 from jbargu/jg_sci_3920 
[SCI-3920] Add omniauth initializer
 2019-10-29 10:29:26 +01:00
Oleksii Kriuchykhin
2637aed853 Fix code styling [SCI-3990][SCI-3993] 2019-10-17 13:38:36 +02:00
Oleksii Kriuchykhin
53402c9ce1 Fix images in reports, impove speed of report generation [SCI-3990][SCI-3993] 2019-10-17 13:30:14 +02:00
Oleksii Kriuchykhin
3d9c2282f3 Implement JPEG quality extraction for ActiveStorage [SCI-3959] 2019-10-08 10:42:55 +02:00
Jure Grabnar
3c40d58d74 Add omniauth initializer 
Close SCI-3920
 2019-10-07 08:31:41 +02:00
Oleksii Kriuchykhin
260fcd6e89 Remove Paperclip from codebase [SCI-3908] 2019-10-02 19:45:14 +02:00
Oleksii Kriuchykhin
b841d3dd6b Add override for ActiveStorage downloader to handle missing file checksums [SCI-3888] 2019-09-18 15:34:49 +02:00
Oleksii Kriuchykhin
7181365f7d Allow use of libvips through env variable [SCI-3881] 2019-09-18 09:49:02 +02:00
Oleksii Kriuchykhin
4639d4d1d0 Temporary disable Vips image processor [SCI-3881] 2019-09-17 16:25:37 +02:00
Oleksii Kriuchykhin
3509543e7b Merge branch 'master' into ok_SCI_3881 2019-09-16 11:56:49 +02:00
Oleksii Kriuchykhin
bc38c6b29e Fix failing test [SCI-3745] 2019-09-16 10:26:13 +02:00
Oleksii Kriuchykhin
c068901b00 Upgrade Rails to 6.0 [SCI-3745] 2019-09-12 17:24:08 +02:00
Oleksii Kriuchykhin
c65c0cf356 Make previewable document filter more strict [SCI-3817] 2019-09-04 10:39:04 +02:00
Oleksii Kriuchykhin
267c53c2d2 Refactor inventory sharing logic [SCI-3803] 2019-08-29 17:21:49 +02:00
Oleksii Kriuchykhin
3918c893db Fix new office file creation [SCI-3778] 2019-08-21 13:26:11 +02:00
Urban Rotnik
89f289660b Add share_with_all feature to service, add new activities 2019-08-14 11:03:15 +02:00
Miha Mencin
d1ecdedd59 SCI-3768 remove .freeze from multiple constants 2019-08-12 22:31:47 +02:00
Urban Rotnik
7719b825e3 Update wording for sharing activities, rename button, add view-only paragraph 2019-08-09 14:15:51 +02:00
Urban Rotnik
32783576c1 Add controller action 'multiple_update' 
Add controller action, add update permission activity, add JS for handling ajax req
 2019-08-09 14:15:50 +02:00
Urban Rotnik
171cdb319b Add ShareInventory activities 2019-08-09 14:13:01 +02:00
Urban Rotnik
f569411bc7 Add TeamRepository model 2019-08-09 14:12:59 +02:00
aignatov-bio
6e5f078dea
Add activities for marvinJS [SCI-3630] (#1950) 
* Add marvinJs activities to step and results

* Add activities for TinyMCE marvinJS assets

* Fix markup
 2019-08-09 09:47:07 +02:00
Oleksii Kriuchykhin
973efa55e1 Merge branch 'master' into ok_SCI_3678 2019-08-08 11:17:07 +02:00
Jure Grabnar
a372d4056d Add last_published protocols.io endpoint 2019-07-14 19:24:53 +02:00
Urban Rotnik
5cf100a787 Show 'published_on' instead of 'created_on' on external_protocols list 2019-07-12 16:56:07 +02:00
Anton Ignatov
7831b0a089 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 15:00:07 +02:00
aignatov-bio
4bae87e3f7
Styling changes in DOCX report [SCI-3633] (#1899) 
* Styling changes in DOCX report

* Update result comments in docx report

* Fix markup
 2019-07-12 13:48:14 +02:00
Anton Ignatov
57a273d5d0 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 11:34:41 +02:00
aignatov-bio
26ef970a1e
Add academy button (#1924) 2019-07-12 11:15:34 +02:00
Oleksii Kriuchykhin
64b7a5646a Implement custom document file previewer [SCI-3677] 2019-07-10 14:37:23 +02:00
mlorb
23270393b0
Merge branch 'master' into ml-sci-3634 2019-07-09 14:38:00 +02:00
Mojca Lorber
7bb82e2fc2 Fix eternal protocols tab visuals 2019-07-09 14:35:40 +02:00
aignatov-bio
1a75a31647
Remove webinar button [SCI-3664] (#1906) 
* Remove webinar button

* Remove constants and i18n
 2019-07-09 14:01:09 +02:00
Oleksii Kriuchykhin
a1941a21dc Futher refactoring of old Paperclip methods [SCI-3539] 2019-07-09 10:28:15 +02:00
Jure Grabnar
ae7da78bff
Merge pull request #1897 from jbargu/jg_sci_3646 
[SCI-3646] Add paging functionality to external protocols
 2019-07-08 13:06:19 +02:00
aignatov-bio
0d1ec0d4ed
Fix I18n and constants in DOCX report (#1901) 2019-07-08 12:51:26 +02:00
Oleksii Kriuchykhin
9d926dc956 Refactor TinyMce assets, user avatars, zip files [SCI-3539] 2019-07-05 16:56:05 +02:00
Jure Grabnar
dc7fee51fa Add Show more protocols functionality to external protocols 
Closes SCI-3646
 2019-07-04 15:35:18 +02:00
Jure Grabnar
20134c9f8a
Features/protocolsio integration (#1893) 
Features/protocolsio integration
 2019-07-03 17:32:20 +02:00
Oleksii Kriuchykhin
028e647f4d Upgrade to Rails 5.2.3 [SCI-3651] 2019-07-03 11:15:13 +02:00
Miha Mencin
4efb0b5a4a SCI-3645 added descending sorting by name 2019-07-02 17:42:55 +02:00
Oleksii Kriuchykhin
4ea6b56582 Fix Step and Result file previews [SCI-3539] 2019-07-01 23:30:20 +02:00
Anton Ignatov
1f40fa69fc Merge branch 'features/marvinjs-integration' of https://github.com/biosistemika/scinote-web into features/marvinjs-integration 2019-07-01 11:51:27 +02:00
aignatov-bio
a08d93376c
Add promo modal when MarvinJS disabled (#1872) 2019-07-01 11:51:13 +02:00
Anton Ignatov
c9ae9f056e Merge branch 'okriuchykhin-ok_SCI_3539' into features/marvinjs-integration 2019-07-01 10:44:29 +02:00
aignatov-bio
2793777463
Features/docx report (#1873) 
* Initial setup for docx report

* Add render for project, experiment, my_module

* Implement converter for RTE fields

* Add all report elements

* fix markup

* Change headers, remove empty blocks, refactored repository draw

* Add smart annotations support

* Fix justify fields

* Prepare for addons integration

* Fix markup

* Add comments to GemFile

* Fix TinyMCE error

* Change UI for new report download selector

* Fix file error in inventory cell for docx

* Fix i18n object for header
 2019-07-01 10:14:16 +02:00
Anton Ignatov
390002f40f Merge branch 'ok_SCI_3539' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_3539 2019-07-01 10:12:26 +02:00
Anton Ignatov
6be227b2d3 Merge branch 'master' of https://github.com/biosistemika/scinote-web into features/marvinjs-integration 2019-06-28 10:47:38 +02:00
Oleksii Kriuchykhin
5acb16d43e Update Asset helper methods [SCI-3539] 2019-06-28 08:17:09 +02:00
Jure Grabnar
0a77cedaf8 Fix sorting of external protocols and start showing results 2019-06-27 22:48:56 +02:00
Anton Ignatov
7e5c39d3e4 Merge branch 'master' into features/marvinjs-integration 2019-06-21 14:51:45 +02:00
Jure Grabnar
b3c3b68dc2 Add external preview to External Protocols tab 
Closes SCI-3563
 2019-06-19 22:54:20 +02:00
Anton Ignatov
a843a016a0 Fix markup and naming 2019-06-19 15:19:47 +02:00
Urban Rotnik
bf6041e13d Update sanitization of html descriptions 2019-06-19 11:05:22 +02:00
Urban Rotnik
c691ad80b5 Add fields to query params for ApiClient 2019-06-17 12:24:16 +02:00
Urban Rotnik
7fad5fc594 Add search service and normalizer for list 2019-06-17 12:24:15 +02:00
Urban Rotnik
a15596a126 Add ImportProtocolService 2019-06-17 12:24:10 +02:00
Urban Rotnik
aadf2eecb4 Basic data normalizer for ProtocolIO 2019-06-17 12:24:08 +02:00
Jure Grabnar
c1cee07a63 Extract API client constants to constants.rb 2019-06-17 12:24:08 +02:00
Anton Ignatov
f480c0eb8d Adding new activtiies for image editing 2019-06-14 16:15:30 +02:00
aignatov-bio
52a2f5cd0e
Add recent protocols dropdown to task page [SCI-3417] (#1800) 
* Add recent protocols dropdown to task page
 2019-06-13 15:47:29 +02:00
Oleksii Kriuchykhin
109793c7fb Upgrade to Rails 5.2.3 and add ActiveStorage [SCI-3539] 2019-06-13 12:10:44 +02:00
Jure Grabnar
27edafaafb Fix unlinked file in processing image quality 2019-06-09 09:20:43 +02:00
Oleksii Kriuchykhin
e543a849d4 Add document file preview generation with LibreOffice [SCI-3145] 2019-06-05 14:52:30 +02:00
Oleksii Kriuchykhin
01a5a17bb4 Update Handsontable to 6.2.2 [SCI-3526] 2019-06-04 14:31:37 +02:00
Anton Ignatov
c9a29b12ba Merge branch 'master' into features/marvinjs-integration 2019-05-31 10:27:14 +02:00
Luka Murn
3a2bf2ce8a
Merge pull request #1780 from Ducz0r/lm-perform-wopi-checks-on-startup 
Add a startup check for WOPI_ENABLED == true variables
 2019-05-22 16:56:55 +02:00
Luka Murn
5c88e9ab7e Fix 'if..' logic to work properly when WOPI_ENABLED is undefined 2019-05-22 16:36:23 +02:00
aignatov-bio
2de2ead723
Refactor avatar image appearance across Scinote [SCI-3482] (#1787) 
* Refactor avatar appearance across Scinote
 2019-05-21 15:19:44 +02:00
Luka Murn
4136aa0575 Add a startup check for WOPI_ENABLED == true variables 2019-05-18 10:22:53 +02:00
Anton Ignatov
259b75a6ba Merge branch 'master' into features/marvinjs-integration 2019-05-16 09:28:48 +02:00
Miha Mencin
5ff344c208
Merge pull request #1746 from biosistemika/lm-sci-3426 
Changes to create new office file button [SCI-3426]
 2019-05-13 10:55:58 +02:00
aignatov-bio
d3aa6371cd
Fix report saving [SCI-3443] (#1753) 
* Fix report saving

* Fix the report saving by using the reports' structures

* Remove uneccesary yarn.lock (mistake)
 2019-05-13 10:55:08 +02:00
aignatov-bio
0b194eb3b1
Revert "Fix report saving (#1748)" (#1752) 
This reverts commit 3db6129808.
 2019-05-13 09:09:36 +02:00
aignatov-bio
3db6129808
Fix report saving (#1748) 2019-05-13 08:58:47 +02:00
Luka Murn
890df8803e Add file name validation to create new Office file modal window 2019-05-10 18:19:32 +02:00
Anton Ignatov
88e67a16c2 Merge branch 'master-with-note-section' into feature/marvinjs-integration 2019-05-02 16:16:03 +02:00
Anton Ignatov
7c55fcf0cf Merge branch 'master' into master-with-note-section 2019-04-30 12:07:59 +02:00
aignatov-bio
687b53feb1
Add new tag activtiies [SCI-3341] (#1712) 
* Add new tag activtiies
 2019-04-30 10:23:09 +02:00
Anton Ignatov
2847ec7609 Add env variable and check for MarvinJS available 2019-04-28 17:08:18 +02:00
Anton Ignatov
40c1c9aef7 Add marvin js modal 2019-04-26 18:24:21 +02:00
aignatov-bio
dc7fddc60a
Improve task tags (#1708) 2019-04-26 15:38:33 +02:00
Oleksii Kriuchykhin
7c91b4a255 Merge remote-tracking branch 'scinote/master-with-note-section' into ok_SCI_3266 2019-04-23 17:01:13 +02:00
Oleksii Kriuchykhin
c7a707f9db Fix task clonning with TinyMCE images [SCI-3266] 2019-04-23 15:16:40 +02:00
Urban Rotnik
11a7a975af Merge branch 'features/scinote-improvements' into master-with-note-section 2019-04-23 14:50:03 +02:00
Anton Ignatov
aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
aignatov-bio
6b45dcd475
Update eln export for new tinyMCE image format (#1680) 2019-04-19 14:44:40 +02:00
Mojca Lorber
b00cf07684 Add activity for importing inventory items 2019-04-18 15:18:10 +02:00
aignatov-bio
7ef7e2397f
Change activity filter order and reduce custom date label size [SCI-3301] (#1651) 
* Change activity filter order and reduce custom date label size

* Fix hound
 2019-04-09 14:18:22 +02:00
Mojca Lorber
501c46bc92 Remove activities that belong to addons 2019-04-05 16:25:22 +02:00
Jure Grabnar
613843d095 Temp commit 2019-04-04 16:58:55 +02:00
Jure Grabnar
7136294386 Remove archive_task from the list of activity_types 
Closes SCI-3288
 2019-04-03 19:13:00 +02:00
Oleksii Kriuchykhin
9e91e9e59d Improve large image saving after editing [SCI-3289] 2019-04-03 16:31:56 +02:00
Jure Grabnar
22d193114e Add asset to activity message item type 
Closes SCI-3283
 2019-04-02 16:10:20 +02:00
aignatov-bio
e6102c72c7
Adding missed activities [SCI-3253] (#1614) 
* Adding missed activties

* Adding test for activities
 2019-04-02 11:50:37 +02:00
Urban Rotnik
b91f08fe99 Add activity for copying Inventory and Invetory item 2019-04-01 15:40:00 +02:00
Mojca Lorber
3c69225d6b Change activities for task protocols 2019-03-29 15:09:20 +01:00
aignatov-bio
5c8f976ad1
Adding missed project comment activities [SCI-3250] (#1612) 
* Adding missed project comment activities

* Fix markup
 2019-03-29 11:45:31 +01:00
aignatov-bio
b51dcc9d75
Adding children selector to global activities subjects [SCI-3247] (#1605) 
* Adding children selector to global activities subjects

* Fix naming, add seperate check for project id
 2019-03-29 09:26:27 +01:00
Mojca Lorber
f06358b2ae Implement missing tests for global activities (task and protocol activities) 2019-03-27 11:24:44 +01:00
aignatov-bio
54fd3a748b
Adding activity groups [SCI-3203] (#1588) 
* Adding activty groups
 2019-03-26 15:29:21 +01:00
Miha Mencin
4a87216a3d
Merge branch 'master' into features/global-activities 2019-03-25 14:35:24 +01:00
aignatov-bio
9fff93ab0e
Merge pull request #1576 from biosistemika/image-editor-prototype 
Feature/Image annotation
 2019-03-22 16:31:00 +01:00
Anton Ignatov
4ec0a3c871 Update TinyMCE image loader for new fields 2019-03-22 10:52:26 +01:00
Mojca Lorber
4f9814b884 Merge branch 'features/global-activities' of github.com:biosistemika/scinote-web into ml-sci-3021 2019-03-20 11:03:00 +01:00
Mojca Lorber
cd7a87348f Protocol activities refactoring, without tests 2019-03-19 16:12:07 +01:00
Mojca Lorber
1418abc8d7 Reports activities refactoring 2019-03-19 15:33:57 +01:00
Urban Rotnik
fe35c805b7 Add model breadcrumbs, update activities_helper 2019-03-19 14:01:06 +01:00
aignatov-bio
6eae12efab
Updating permission check for image editing [SCI - 3153, 3159] (#1568) 
*Add permission check for assets editing

* Add check for image format
 2019-03-19 13:52:57 +01:00
Luka Murn
fc4b271803 Fix stack trace trimming on WOPI middleware 2019-03-14 08:34:04 +01:00
Urban Rotnik
32422c00eb RepositoryRows actions loggin 2019-03-12 09:11:00 +01:00
Urban Rotnik
1a3c97b978 Add new enum values for Activity type_of 2019-03-12 09:11:00 +01:00
Oleksii Kriuchykhin
af94f79f0d Submit image as FormData [SCI-2879] 2019-03-11 15:13:08 +01:00
Oleksii Kriuchykhin
89e968c410 Add tui.image-editor [SCI-2815] 2019-03-11 15:08:15 +01:00
Urban Rotnik
b8e84b5685 Add logic for saving message items values and types 2019-03-11 08:37:22 +01:00
Oleksii Kriuchykhin
0b87e8e1e4 Merge branch 'features/global-activities' into ok_SCI_3024_v3 2019-03-08 10:29:51 +01:00
Oleksii Kriuchykhin
0c99ea9c5c Fix local storage file download links [SCI-3048] 2019-03-07 16:46:05 +01:00
aignatov-bio
ec2dbb897f
Adding side pane filter and top pane tags [SCI - 3008, 3009, 3010, 3011, 3012, 3018, 3019, 3020] (#1521) 
* Adding side pane filtering and top pane
 2019-03-06 10:34:04 +01:00
Oleksii Kriuchykhin
0930277c4e Add views and helpers for global activities individual cards [SCI-2994][SCI-3024] 2019-02-27 16:02:53 +01:00
Oleksii Kriuchykhin
74a60d443d Merge branch 'features/global-activities' into ok_SCI_3014_v2 2019-02-26 13:46:25 +01:00
Oleksii Kriuchykhin
61147b480c Add main global activities bussiness logic [SCI-3014] 2019-02-26 11:01:15 +01:00
Urban Rotnik
5a123d26ac Activity model update 2019-02-26 07:15:05 +01:00
Urban Rotnik
7b6c6c414d Merge branch 'master' into features/templates 2019-02-19 14:46:15 +01:00
Urban Rotnik
5b55860dea Add scheduler 2019-02-13 15:48:15 +01:00
Oleksii Kriuchykhin
da30d187a6 Create templates project when syncing templates if team doesn't have it [SCI-3039] 2019-02-13 15:17:33 +01:00
aignatov-bio
5c85595ab4
System Notifications - View All Page [SCI-2956 and SCI-3001] (#1482) 
* System notification view and notification partial (SCI 2956 and SCI 3001)
 2019-02-13 13:06:14 +01:00
Oleksii Kriuchykhin
cc92de3726 Merge latest features/templates [SCI-2939] 2019-01-30 10:43:54 +01:00
Urban Rotnik
863e3873c2 Comment for depricated NotificationType 2019-01-29 11:40:26 +01:00
Oleksii Kriuchykhin
bd2efa55ac Add templates business logic [SCI-2939] 2019-01-25 10:55:08 +01:00
Urban Rotnik
6cf4717ab3 Add envirnoments to run app without docker, reorder Gemfile 
- Reorder Gemfile into alphabet order (rule by Rubocop)
- Add extra ENV variable for custom DB settings locally
- Add extra ENV for disable spoof check on Paperclip
 2019-01-18 16:01:09 +01:00
Alex Kriuchykhin
b530cea771
Merge pull request #1438 from okriuchykhin/ok_SCI_2776 
Add counters to task inventories dropdown [SCI-2776]
 2019-01-11 16:27:22 +01:00
Alex Kriuchykhin
c2b38af91e
Merge pull request #1439 from okriuchykhin/ok_SCI_2888 
Rename CORE_API_V1_PREVIEW env. variable to CORE_API_V1_ENABLED [SCI-2888]
 2019-01-10 11:05:07 +01:00
Oleksii Kriuchykhin
6a64b23f90 Rename CORE_API_V1_PREVIEW env. variable to CORE_API_V1_ENABLED [SCI-2888] 2019-01-04 10:44:38 +01:00
Oleksii Kriuchykhin
534866467b Add counters to task inventories dropdown [SCI-2776] 2019-01-03 14:11:00 +01:00
Oleksii Kriuchykhin
2769add4d9 Disable edit button for unsupported WOPI formats [SCI-2904] 2018-12-31 18:10:12 +01:00
Oleksii Kriuchykhin
3277ab1422 Fix default value setting for rack attack [SCI-2864] 2018-12-17 15:15:56 +01:00
Alex Kriuchykhin
a4b75f00d2
Merge pull request #1400 from okriuchykhin/ok_SCI_2727 
Make AWS access key variables optional [SCI-2727]
 2018-11-28 14:45:45 +01:00
Oleksii Kriuchykhin
32d00cb2b9 Make AWS access key variables optional [SCI-2727] 2018-11-28 10:41:05 +01:00
Alex Kriuchykhin
5ce6a9babd
Merge pull request #1399 from okriuchykhin/ok_SCI_2727 
Add subfolder option to S3 bucket config [SCI-2727]
 2018-11-27 17:46:36 +01:00
Oleksii Kriuchykhin
32536db171 Add subfolder option to S3 bucket config [SCI-2727] 2018-11-27 14:58:34 +01:00