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524 commits

Author SHA1 Message Date
Jure Grabnar
20120bf2e6 Add test for empty search key 2019-07-15 08:44:02 +02:00
Jure Grabnar
015dae1a05 Fix old tests 2019-07-15 08:27:34 +02:00
Urban Rotnik
5cf100a787 Show 'published_on' instead of 'created_on' on external_protocols list 2019-07-12 16:56:07 +02:00
Anton Ignatov
ffd415d409 Inital refactor for Assets model 2019-07-12 15:02:06 +02:00
Anton Ignatov
57a273d5d0 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 11:34:41 +02:00
Jure Grabnar
ed5eb39bb2 Fix tests for GET show on protocols.io 2019-07-10 19:20:40 +02:00
Urban Rotnik
b9bec32316 Add tests for StepComponents 2019-07-10 12:48:08 +02:00
Urban Rotnik
be77746aef Fix description styling of components 2019-07-09 13:41:51 +02:00
Jure Grabnar
05f2210002
SCI-3650, SCI-3655 Fix empty file name, empty description when… (#1892) 
SCI-3650, SCI-3655 Fix empty file name, empty description when parsing tables
 2019-07-09 10:24:03 +02:00
Jure Grabnar
ae7da78bff
Merge pull request #1897 from jbargu/jg_sci_3646 
[SCI-3646] Add paging functionality to external protocols
 2019-07-08 13:06:19 +02:00
Miha Mencin
ab9b7a7429
Merge pull request #1902 from biosistemika/release-1.16.6 
Merge 'release-1.16.6' into 'master'
 2019-07-08 12:49:40 +02:00
aignatov-bio
291563c80e
Fix tests for 1.16.6 release (#1903) 
* Fix tests for 1.16.6 release
 2019-07-08 11:09:24 +02:00
Oleksii Kriuchykhin
9d926dc956 Refactor TinyMce assets, user avatars, zip files [SCI-3539] 2019-07-05 16:56:05 +02:00
Jure Grabnar
6e1d4c205c Add tests for page_id for search service 2019-07-04 16:02:29 +02:00
Jure Grabnar
9f42f6f24b Fix normalizer tests caused by pagination 2019-07-04 15:45:09 +02:00
Jure Grabnar
20134c9f8a
Features/protocolsio integration (#1893) 
Features/protocolsio integration
 2019-07-03 17:32:20 +02:00
Jure Grabnar
8866d98512 Fix empty file name on protocols.io 
Closes SCI-3650
 2019-07-03 16:11:51 +02:00
Miha Mencin
b709c0ec3c fix the normalized protocol fixture 2019-07-03 11:49:01 +02:00
Anton Ignatov
c9ae9f056e Merge branch 'okriuchykhin-ok_SCI_3539' into features/marvinjs-integration 2019-07-01 10:44:29 +02:00
Anton Ignatov
390002f40f Merge branch 'ok_SCI_3539' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_3539 2019-07-01 10:12:26 +02:00
Anton Ignatov
6be227b2d3 Merge branch 'master' of https://github.com/biosistemika/scinote-web into features/marvinjs-integration 2019-06-28 10:47:38 +02:00
Jure Grabnar
9be4fc2470 Fix tests 2019-06-28 02:19:06 +02:00
Urban Rotnik
9cb4454537 New implementation for attachments creation 2019-06-27 17:02:06 +02:00
Jure Grabnar
82fb8ebd2e
Implement protocols.io error handling (#1869) 
Implement protocols.io error handling
 2019-06-27 16:35:55 +02:00
Jure Grabnar
7fc1243e48 Add ProtocolNormalizer errors tests 2019-06-27 14:59:03 +02:00
Jure Grabnar
06b8d1fda7 Update ApiClient tests 
Closes SCI-3434
 2019-06-27 14:54:19 +02:00
Mojca Lorber
9fd83d54a0 Put network error handeling into api and refactor errors 2019-06-26 14:04:03 +02:00
aignatov-bio
83bc9eb22f
Merge pull request #1839 from aignatov-bio/ai-sci-3369-activity-for-edited-image-annotation 
Adding new activities for image editing [SCI-3369]
 2019-06-24 10:31:39 +02:00
Anton Ignatov
7e5c39d3e4 Merge branch 'master' into features/marvinjs-integration 2019-06-21 14:51:45 +02:00
Anton Ignatov
6530786f17 Fix tests 2019-06-20 16:05:19 +02:00
aignatov-bio
a00ec02983
Add tests for edit WOPI activities [SCI-3238] (#1822) 
* Add tests for edit wopi activities
 2019-06-20 09:31:29 +02:00
Anton Ignatov
6f1f6e297c Fix tests 2019-06-19 15:40:27 +02:00
Urban Rotnik
bf6041e13d Update sanitization of html descriptions 2019-06-19 11:05:22 +02:00
Urban Rotnik
7e69375016 Drop header column and row when extract tables 2019-06-19 10:47:38 +02:00
Urban Rotnik
2a579f2240 Add Warnings, Before start and Guidelinese to protocol description 2019-06-19 09:02:42 +02:00
Mojca Lorber
ebcaa4b014 Implement protocols.io error handling for api client and normalizer 2019-06-18 14:01:57 +02:00
Urban Rotnik
c691ad80b5 Add fields to query params for ApiClient 2019-06-17 12:24:16 +02:00
Urban Rotnik
88d96c0938 Use service in controller 2019-06-17 12:24:15 +02:00
Urban Rotnik
7fad5fc594 Add search service and normalizer for list 2019-06-17 12:24:15 +02:00
Jure Grabnar
4f6397b5b9 Add form to external_sources#new action 
Closes SCI-3532
 2019-06-17 12:24:15 +02:00
Jure Grabnar
c8b8bcffdb Add external_protocols#show action 2019-06-17 12:24:14 +02:00
Jure Grabnar
f7c6f78925 Add external_protocols#index action 2019-06-17 12:24:14 +02:00
Jure Grabnar
2a61075156 Add ExternalProtocols#create action and tests 2019-06-17 12:24:14 +02:00
Jure Grabnar
9baa66c998 Refactor OnlineSources -> ExternalProtocols 2019-06-17 12:24:13 +02:00
Jure Grabnar
eb0d677a36 Refactor pio_protocol -> built_protocol 2019-06-17 12:24:13 +02:00
Jure Grabnar
94e7fe1e6c OnlineSourcesController skeleton and #new action tested 2019-06-17 12:24:13 +02:00
Urban Rotnik
0d43ecdfab Import protocol service after object is built 2019-06-17 12:24:11 +02:00
Jure Grabnar
eb275c4d12 Add tests for BuildProtocolService and fix bugs 2019-06-17 12:24:11 +02:00
Jure Grabnar
362b0cd45d Hound fixes 2019-06-17 12:24:11 +02:00
Jure Grabnar
640f6c1211 Fix tests after BuildProtocolFromClientService refactor 
Closes SCI-3544
 2019-06-17 12:24:11 +02:00
Jure Grabnar
1e8627c450 Refactor ImportProtocol service to BuildProtocolService 
Closes SCI-3544
 2019-06-17 12:24:10 +02:00
Urban Rotnik
92c24451d9 Moved normalized_single_protocol.json 2019-06-17 12:24:10 +02:00
Urban Rotnik
a15596a126 Add ImportProtocolService 2019-06-17 12:24:10 +02:00
Urban Rotnik
2bb4f558b7 View rendering simplified, small improvements 2019-06-17 12:24:09 +02:00
Urban Rotnik
807104035c Add StepBuilder, TableBuilder, AssetBuilder for PIO, normalized updated 2019-06-17 12:24:09 +02:00
Urban Rotnik
6a4deb0201 Add ProtocolIntermediateObject 2019-06-17 12:24:09 +02:00
Urban Rotnik
aadf2eecb4 Basic data normalizer for ProtocolIO 2019-06-17 12:24:08 +02:00
Urban Rotnik
ec49388283 Add protocol base normalizer class 2019-06-17 12:24:08 +02:00
Jure Grabnar
c1cee07a63 Extract API client constants to constants.rb 2019-06-17 12:24:08 +02:00
Jure Grabnar
5685709f48 Implement API client for protocols.io 
Closes SCI-3357
 2019-06-17 12:24:07 +02:00
Anton Ignatov
f480c0eb8d Adding new activtiies for image editing 2019-06-14 16:15:30 +02:00
Oleksii Kriuchykhin
109793c7fb Upgrade to Rails 5.2.3 and add ActiveStorage [SCI-3539] 2019-06-13 12:10:44 +02:00
Urban Rotnik
bbe0062bfd Small fixes for factories 2019-06-10 12:24:05 +02:00
Urban Rotnik
1bae169ab0 Delete duplicaed user_project factory 2019-06-10 12:24:05 +02:00
Urban Rotnik
965b7eb58b Add missing factories 2019-06-10 12:24:04 +02:00
Urban Rotnik
f19eeba8dc Add factory valid check for User's associations 2019-06-10 12:24:04 +02:00
Urban Rotnik
ba340f7bee Add valid factory check for Table, Tag, Team 2019-06-10 12:24:03 +02:00
Urban Rotnik
9348886fb1 Minior changes in SystemNotifications tests 2019-06-10 12:24:03 +02:00
Urban Rotnik
15cbd8864c Add valid factory check to Steps models 2019-06-10 12:24:03 +02:00
Urban Rotnik
1e60102a7d Add valid factory check for Sample(s) models 2019-06-10 12:24:02 +02:00
Urban Rotnik
c66aa29227 Add valid factory check for Result(s) models 2019-06-10 12:24:02 +02:00
Urban Rotnik
3adf2bb736 Add factories and validation tests for repositories and related models 
Repositories, cells, columns, values (date, text, asset, list), rows, items
 2019-06-10 12:24:02 +02:00
Urban Rotnik
a7558d83be Add valid factory check for Project, MyModules, notification, protocol 2019-06-10 12:24:01 +02:00
Urban Rotnik
3348b81b14 Checklist, checklist_item, activity, experiment spec and factories updated 2019-06-10 12:24:01 +02:00
Urban Rotnik
6321c0f5c0 Assets spec and factories updated 2019-06-10 12:24:01 +02:00
Alex Kriuchykhin
36255f82ed
Merge pull request #1817 from okriuchykhin/ok_SCI_3522 
Add system notifications service to health check endpoint [SCI-3522]
 2019-06-04 14:41:43 +02:00
Oleksii Kriuchykhin
2842ea381e Fix tests for health check endpoint [SCI-3522] 2019-05-31 16:48:10 +02:00
Luka Murn
98234287f5 Fix failing permission_eval_spec test 2019-05-31 10:33:55 +02:00
Anton Ignatov
c9a29b12ba Merge branch 'master' into features/marvinjs-integration 2019-05-31 10:27:14 +02:00
Oleksii Kriuchykhin
0fd7a4e8f1 Fix failing tests [SCI-3412] 2019-05-27 17:32:21 +02:00
Anton Ignatov
259b75a6ba Merge branch 'master' into features/marvinjs-integration 2019-05-16 09:28:48 +02:00
Anton Ignatov
652fba0e23 Merge branch 'master-with-note-section' 2019-05-13 11:08:11 +02:00
Alex Kriuchykhin
2a7f70929a
Merge pull request #1717 from okriuchykhin/ok_SCI_3368 
Improve clean up of Export All files [SCI-3368]
 2019-05-09 13:37:56 +02:00
Anton Ignatov
dcf94e78e1 Merge branch 'master-with-note-section' into feature/marvinjs-integration 2019-05-08 14:03:41 +02:00
Urban Rotnik
62bc0520e9 Update method last_sync_timestamp from Last to First user 2019-05-08 08:38:11 +02:00
Urban Rotnik
2364c2653f Add bulk insert for UserSystemNotifications, New service for sending emails 2019-05-08 08:38:10 +02:00
Oleksii Kriuchykhin
84712de9ca Fix failing tests [SCI-3368] 2019-05-07 16:42:06 +02:00
Anton Ignatov
d36160386f Merge branch 'master' into master-with-note-section 2019-05-07 13:26:55 +02:00
Anton Ignatov
88e67a16c2 Merge branch 'master-with-note-section' into feature/marvinjs-integration 2019-05-02 16:16:03 +02:00
Oleksii Kriuchykhin
4522e6bf06 Update Ruby to 2.5.5, Rails to 5.1.7 and Devise to 4.6.2 [SCI-3401] 2019-04-30 17:04:48 +02:00
Anton Ignatov
7c55fcf0cf Merge branch 'master' into master-with-note-section 2019-04-30 12:07:59 +02:00
aignatov-bio
687b53feb1
Add new tag activtiies [SCI-3341] (#1712) 
* Add new tag activtiies
 2019-04-30 10:23:09 +02:00
Anton Ignatov
c1214c84f5 Fix factories markup 2019-04-28 19:52:30 +02:00
Anton Ignatov
f80d881847 Fix markup 2019-04-28 19:11:41 +02:00
Anton Ignatov
fe620c4a63 Add marvin model and controller 2019-04-26 22:59:38 +02:00
Mojca Lorber
9e04eb8ea1 Fixes upon Urbans request 2019-04-26 11:34:53 +02:00
Oleksii Kriuchykhin
260782e233 Update tests for new rich text enabled fileds [SCI-3264] 2019-04-24 13:45:29 +02:00
Oleksii Kriuchykhin
7c91b4a255 Merge remote-tracking branch 'scinote/master-with-note-section' into ok_SCI_3266 2019-04-23 17:01:13 +02:00
Oleksii Kriuchykhin
c7a707f9db Fix task clonning with TinyMCE images [SCI-3266] 2019-04-23 15:16:40 +02:00
Anton Ignatov
aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
aignatov-bio
6ac620feb3
Migration for old tinymce assets [SCI-3176] (#1663) 
* adding rake task

* Addign test for update images

* Adding tests for tiny mce model
 2019-04-19 15:24:54 +02:00
aignatov-bio
a75c4c2f91
Update Result API for new tiny mce image format (#1674) 2019-04-19 14:44:16 +02:00
Mojca Lorber
208b7c9939 Fix hound 2019-04-19 13:56:21 +02:00
Mojca Lorber
36e7cfe5c4 Change failing tests 2019-04-19 13:37:52 +02:00
Mojca Lorber
b00cf07684 Add activity for importing inventory items 2019-04-18 15:18:10 +02:00
Oleksii Kriuchykhin
96cf7b4de2 Fix failing tests [SCI-3177] 2019-04-17 12:58:47 +02:00
Urban Rotnik
22af36dd2d Fix for exports_left, fix for some edge cases 2019-04-16 09:59:02 +02:00
Urban Rotnik
caccf8d9f0 Reset counter for export in last 24 hours 
Fix for check if user has avaiable exports, bit refactored increas_counter method.
 2019-04-10 10:56:33 +02:00
Anton Ignatov
94efd2e649 Fix tests 2019-04-02 16:04:50 +02:00
Urban Rotnik
86ddbc68b6 fixup! Show date actual value without link 2019-04-02 14:21:06 +02:00
Anton Ignatov
c9f9523210 Remove src when save description and rename token tag 2019-04-02 13:41:32 +02:00
Urban Rotnik
8eaeeee9f8 Show date actual value without link 2019-04-02 13:15:34 +02:00
aignatov-bio
e6102c72c7
Adding missed activities [SCI-3253] (#1614) 
* Adding missed activties

* Adding test for activities
 2019-04-02 11:50:37 +02:00
Urban Rotnik
b91f08fe99 Add activity for copying Inventory and Invetory item 2019-04-01 15:40:00 +02:00
Jure Grabnar
e165459ef5
Merge pull request #1574 from jbargu/jg_sci_3149_3163 
Valid smart annotation links of smart annotation imported within protocol [SCI-3149, 3163]
 2019-04-01 14:32:54 +02:00
Jure Grabnar
ebc2d8ee75 Fix experiment_spec test using the old variable 
Closes SCI-3244
 2019-04-01 12:50:35 +02:00
Mojca Lorber
f06358b2ae Implement missing tests for global activities (task and protocol activities) 2019-03-27 11:24:44 +01:00
Miha Mencin
4a87216a3d
Merge branch 'master' into features/global-activities 2019-03-25 14:35:24 +01:00
Jure Grabnar
f3e6a35121 Update PermissionEval tests with team check 2019-03-21 10:45:21 +01:00
Mojca Lorber
c55e314ed5 Refactor upon the review requests 2019-03-20 21:34:47 +01:00
Anton Ignatov
5d6f009ee8 fix error for delay deleting 2019-03-20 15:20:31 +01:00
Anton Ignatov
55c93922ea markup fixes 2019-03-20 14:46:54 +01:00
Anton Ignatov
07c2819163 refactoring tinymce image uploading 2019-03-20 14:46:54 +01:00
Jure Grabnar
5de51f9c58 Prevent smart annotations accessing other teams when importing protocol 
Closes SCI-3163
 2019-03-20 12:58:22 +01:00
Mojca Lorber
4f9814b884 Merge branch 'features/global-activities' of github.com:biosistemika/scinote-web into ml-sci-3021 2019-03-20 11:03:00 +01:00
Mojca Lorber
7757096693 Results activities refactoring 2019-03-19 15:33:57 +01:00
Mojca Lorber
1418abc8d7 Reports activities refactoring 2019-03-19 15:33:57 +01:00
Mojca Lorber
d1e38e5bc9 Project activities refactoring 2019-03-19 15:33:57 +01:00
Mojca Lorber
70eebca5ee experiment activities refactoring 2019-03-19 15:33:57 +01:00
Urban Rotnik
fe35c805b7 Add model breadcrumbs, update activities_helper 2019-03-19 14:01:06 +01:00
Urban Rotnik
c65d1af18d Fix failing tests 2019-03-13 09:53:34 +01:00
Urban Rotnik
b6a8556601 Add activities for exporting Projects, Inventory items 2019-03-12 09:15:06 +01:00
Urban Rotnik
e7b57aa4f7 Add creating activities for Team actions 2019-03-12 09:15:06 +01:00
Urban Rotnik
3f18166320 Add Task and TaskTags activities 2019-03-12 09:15:06 +01:00
Urban Rotnik
7a05e817ef Add new Protocol steps activities 2019-03-12 09:15:06 +01:00
Urban Rotnik
b33e95e18a New Protocols actions logging 2019-03-12 09:14:53 +01:00
Urban Rotnik
cfe2888bea Repository columns actions loggin 2019-03-12 09:11:00 +01:00
Urban Rotnik
32422c00eb RepositoryRows actions loggin 2019-03-12 09:11:00 +01:00
Urban Rotnik
2a7bbac733 Repository actions logging 2019-03-12 09:11:00 +01:00
Urban Rotnik
976831e7d3 Edit and Archive experiment activity logging 2019-03-12 09:11:00 +01:00
Urban Rotnik
b8e84b5685 Add logic for saving message items values and types 2019-03-11 08:37:22 +01:00
Urban Rotnik
9ed3313f0f Create project activity refactored 2019-03-11 08:36:15 +01:00
Urban Rotnik
117944117b Add service for activity creation 2019-03-11 08:36:15 +01:00
Miha Mencin
51b3aea49a added uniquness validator and index on user_projects and user_teams relations 
finxing typo, fixied failing test

fixing mistakenly commited file

fixing schema to include bigint migration
 2019-02-27 15:09:47 +01:00
Urban Rotnik
5a123d26ac Activity model update 2019-02-26 07:15:05 +01:00
Urban Rotnik
3ad6cee766 Fix tests, remove nullable field 2019-02-25 16:50:38 +01:00
Urban Rotnik
5b5c6c7122 Changes to Activity model 2019-02-25 16:49:55 +01:00
Miha Mencin
bcd0b433b6
Merge pull request #1514 from biosistemika/features/system-notifications 
Features/system notifications
 2019-02-21 16:38:58 +01:00
aignatov-bio
5f78d83f9c
Changing status from unread to read system notification is not correct one [SCI-3077 and SCI-3075] (#1513) 
* fix dropdown apperance

* Remove search and fix duplicate bug

* Fix specs for new method
 2019-02-21 16:15:13 +01:00
aignatov-bio
5fdba554d2
Merge pull request #1510 from biosistemika/features/system-notifications 
Features/system notifications
 2019-02-20 17:22:57 +01:00