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9474 commits 70 branches 179 tags 165 MiB
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303 commits

Author SHA1 Message Date
aignatov-bio f77902f6d4 Add tinymce table support to docx 2020-07-15 09:44:25 +02:00
aignatov-bio 39b5651283 Revert FontAwesome in reports to CDN 2020-07-14 09:44:03 +02:00
aignatov-bio f8c6d9f260 Fix markup 2020-07-13 14:31:57 +02:00
aignatov-bio a7fac38fcb Improve pdf reports 2020-07-13 14:29:59 +02:00
Urban Rotnik 5d067077b1 Add logo and timestamp to PDF and Doc reports 2020-07-08 10:48:29 +02:00
Urban Rotnik 69d086ba32 Scope snapshots to project 2020-06-03 22:58:22 +02:00
Oleksii Kriuchykhin d774a82762 Fix handling of snapshots of deleted repositories in reports [SCI-4698] 2020-05-29 16:30:27 +02:00
Oleksii Kriuchykhin 7a95355e81 Add extra check for repository presence in report [SCI-4698] 2020-05-29 11:39:07 +02:00
Oleksii Kriuchykhin b430d507cf Fix handling of deleted repositories in reports [SCI-4698] 2020-05-27 12:15:19 +02:00
Urban Rotnik df8fe20d03 Keep reportElements up to date with active snapshots and repositories 2020-05-25 13:19:33 +02:00
Urban Rotnik 359517eb17 Add deleted repositories to report 2020-05-25 13:19:30 +02:00
Urban Rotnik 2b493ce6f6 Refactor assigned rows 2020-05-25 13:19:29 +02:00
Urban Rotnik 9536939b3b Show snapshot rows in report 2020-05-25 13:19:28 +02:00
Oleksii Kriuchykhin 15a793a343 Fix start date interpolation in reports [SCI-4504] 2020-03-31 18:44:43 +02:00
Oleksii Kriuchykhin 3c53be1f9a Add start date to the task [SCI-4504] 2020-03-31 14:17:14 +02:00
aignatov-bio da4b55ceea Fix protocol and report create modals after dashboard redirect 2020-03-19 19:43:20 +01:00
aignatov-bio 95fca105eb Add quickstart layout and create task modal 2020-02-28 14:34:34 +01:00
aignatov-bio 5953c2543d Fix typo and boostrap load order 2020-01-08 12:07:33 +01:00
aignatov-bio 68646276f5 Replace bootstrap styles for button 2020-01-07 16:13:34 +01:00
aignatov-bio a281f09e7f Add reports and missed modals 2020-01-06 10:40:20 +01:00
Oleksii Kriuchykhin 7a89cae56f Fix TinyMCE images and avatars for export all [SCI-4107] 2019-12-05 13:27:17 +01:00
Oleksii Kriuchykhin 53402c9ce1 Fix images in reports, impove speed of report generation [SCI-3990][SCI-3993] 2019-10-17 13:30:14 +02:00
Oleksii Kriuchykhin 3509543e7b Merge branch 'master' into ok_SCI_3881 2019-09-16 11:56:49 +02:00
Luka Murn a6ca155fa7 Rename repository module report element to have new CSS class 2019-08-23 16:05:42 +02:00
aignatov-bio 5515bac773
Add assigned items from shared inventories to report (#2002) 2019-08-23 11:28:09 +02:00
Oleksii Kriuchykhin 973efa55e1 Merge branch 'master' into ok_SCI_3678 2019-08-08 11:17:07 +02:00
Luka Murn 83bb89fdf5 Cherry-picked commit from ZZ (and LM)'s various changes 2019-07-26 10:13:14 +02:00
Jure Grabnar 5847a8b05c Convert HOT table after it was initialized 
Closes SCI-3704
 2019-07-23 14:17:22 +02:00
aignatov-bio 3c32fe0895
Fix formulas in table report (#1934) 2019-07-15 13:27:27 +02:00
mlorb 5bc8eb7392
Merge pull request #1921 from mlorb/ml-sci-3641 
Fix page redirect and add success flash msg after protocols.io import [SCI-3641]
 2019-07-12 15:52:40 +02:00
aignatov-bio 4bae87e3f7
Styling changes in DOCX report [SCI-3633] (#1899) 
* Styling changes in DOCX report

* Update result comments in docx report

* Fix markup
 2019-07-12 13:48:14 +02:00
Anton Ignatov 57a273d5d0 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 11:34:41 +02:00
Mojca Lorber f8afc92606 Fix page redirect and add success flash msg after protocols.io import action 2019-07-11 09:50:39 +02:00
Oleksii Kriuchykhin a1941a21dc Futher refactoring of old Paperclip methods [SCI-3539] 2019-07-09 10:28:15 +02:00
aignatov-bio 4fe3119bd2
Fix step description RTE images in report preview (#1888) 2019-07-08 15:23:44 +02:00
aignatov-bio 01a01157d3
Replace Handson table in reports with simple table [SCI-3636] (#1895) 
* Replace handsone table in reports with simple table

* Add result tables
 2019-07-08 13:19:12 +02:00
aignatov-bio 2793777463
Features/docx report (#1873) 
* Initial setup for docx report

* Add render for project, experiment, my_module

* Implement converter for RTE fields

* Add all report elements

* fix markup

* Change headers, remove empty blocks, refactored repository draw

* Add smart annotations support

* Fix justify fields

* Prepare for addons integration

* Fix markup

* Add comments to GemFile

* Fix TinyMCE error

* Change UI for new report download selector

* Fix file error in inventory cell for docx

* Fix i18n object for header
 2019-07-01 10:14:16 +02:00
Anton Ignatov 390002f40f Merge branch 'ok_SCI_3539' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_3539 2019-07-01 10:12:26 +02:00
Oleksii Kriuchykhin 5acb16d43e Update Asset helper methods [SCI-3539] 2019-06-28 08:17:09 +02:00
aignatov-bio 7a3eedf461
Adding missing avatars to comments (#1838) 2019-06-14 16:20:13 +02:00
aignatov-bio d3aa6371cd
Fix report saving [SCI-3443] (#1753) 
* Fix report saving

* Fix the report saving by using the reports' structures

* Remove uneccesary yarn.lock (mistake)
 2019-05-13 10:55:08 +02:00
aignatov-bio 71b3228310
Update protocol preview style [SCI-3416] (#1729) 
* Update protocol appearance
 2019-05-13 10:45:12 +02:00
aignatov-bio 0b194eb3b1
Revert "Fix report saving (#1748)" (#1752) 
This reverts commit 3db6129808.
 2019-05-13 09:09:36 +02:00
aignatov-bio 3db6129808
Fix report saving (#1748) 2019-05-13 08:58:47 +02:00
aignatov-bio 1a860037f7
Update reports for new RTE [SCI-3263] (#1691) 
* Update reports for new RTE
 2019-04-25 16:16:43 +02:00
Urban Rotnik 11a7a975af Merge branch 'features/scinote-improvements' into master-with-note-section 2019-04-23 14:50:03 +02:00
Anton Ignatov aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
Jure Grabnar 1295c0583a Archived results are now separated in exported project 
Closes SCI-3179
 2019-04-17 16:37:21 +02:00
Urban Rotnik 26cf8271a1 Change step header, remove vertical line 2019-04-05 10:57:38 +02:00
Jure Grabnar 26848ecaef Refactor step position + 1 into a method 2019-04-03 13:07:30 +02:00
Oleksii Kriuchykhin 98e58ff7eb Add global activities to reports [SCI-3255] 2019-04-01 11:26:51 +02:00
Miha Mencin 1b19e67c07 Revert "Step header changes, removed vertical line" 
This reverts commit b0f0ded87d.
 2019-03-27 10:21:40 +01:00
Urban Rotnik b0f0ded87d Step header changes, removed vertical line 
SCI-3134
 2019-03-25 17:25:13 +01:00
Anton Ignatov 4ec0a3c871 Update TinyMCE image loader for new fields 2019-03-22 10:52:26 +01:00
Anton Ignatov 07c2819163 refactoring tinymce image uploading 2019-03-20 14:46:54 +01:00
Urban Rotnik 686f10cbd0 Refactor instance method 'ordered_modules' to scope 2019-01-18 16:56:33 +01:00
Urban Rotnik 1b70f42817 Refactor 'Experiment.modules_without_group' to Module's scope 2019-01-18 16:54:00 +01:00
Oleksii Kriuchykhin ec28db6f4f Fix image URLs in export all document [SCI-2931] 2019-01-10 14:19:40 +01:00
Luka Murn 65adc7a556 Fix 2 minor visual bugs in reports 2018-12-12 11:15:32 +01:00
Alex Kriuchykhin 20e2cbf0ca
Merge pull request #1391 from okriuchykhin/ok_SCI_2880 
Fix smart annotations rendering issues [SCI-2880]
 2018-11-28 09:47:20 +01:00
Oleksii Kriuchykhin 2e00f1546a Fix handsontable initialization [SCI-2882] 2018-11-26 14:11:46 +01:00
Oleksii Kriuchykhin b926cadba4 Fix smartannotations rendering issues [SCI-2880] 2018-11-23 15:07:08 +01:00
Matej Zrimšek 57dbd63aa3 Add archive badge for archived projetcs/experiments/modules in export-all PDF [SCI-2817] 2018-11-12 01:34:00 +01:00
Matej Zrimšek 48a6a64502 Move PDF generation and export logic of export all PDF to the model 2018-10-14 22:52:54 +02:00
Matej Zrimšek 69f3a919db Some specification and syntax fixes [SCI-2641] 2018-10-12 07:42:17 +02:00
Matej Zrimšek d970576d60 Switch between generating report PDF and export all PDF [SCI-2641] 2018-10-12 07:40:21 +02:00
Matej Zrimšek c0dc4f6951 Add hyperlinks to inventories' *.csv files in export all PDF [SCI-2641] 2018-10-12 07:40:21 +02:00
Matej Zrimšek 7152d2f0f1 Fix/update file naming convection for exported files [SCI-2641] 2018-10-12 07:40:21 +02:00
Matej Zrimšek 6f77c4772c Minor fix for assets & tables naming in export all PDF 2018-10-12 07:40:21 +02:00
Matej Zrimšek 0ebce8e283 Add relative links (not working) to files and tables into the PDF [SCI-2641] 2018-10-12 07:40:21 +02:00
Alex Kriuchykhin 75a48291e1
Merge pull request #1272 from okriuchykhin/ok_SCI_2654 
Fix report elements sorting [SCI-2654]
 2018-08-22 14:20:54 +02:00
Oleksii Kriuchykhin 62d99a4372 Fix report elements sorting [SCI-2654] 2018-08-20 14:46:23 +02:00
Zanz2 dfcaa40f1a
Merge branch 'master' into zz_refactor_icons_sci_2445_v2 2018-08-14 13:33:43 +02:00
Zanz2 45a4c1c598 changed the icons as per last comment in jira issue 2018-08-14 13:26:48 +02:00
Oleksii Kriuchykhin b2bd1cb849 Upgrade to Turbolinks 5 [SCI-2253] 2018-07-27 17:26:46 +02:00
Oleksii Kriuchykhin 6669beaf0e Change icons throughout the rest of application [SCI-2445] 2018-07-27 15:27:08 +02:00
Oleksii Kriuchykhin 13c374d9b3 Add hooks to new report modal [SCI-2377] 2018-06-14 15:26:06 +02:00
Luka Murn 9a4fdd166e Merge branch 'lm-sci-2431-fix' of https://github.com/Ducz0r/scinote-web into Ducz0r-lm-sci-2431-fix 
Conflicts:
	app/views/projects/index.html.erb
 2018-06-12 17:44:42 +02:00
zmagod 51e024e3d7 adds data-hooks to reports and search results [fixes SCI-2374] 2018-06-07 14:29:40 +02:00
Luka Murn e0a3b5a941 Fix Save PDF to repository modal window 2018-06-06 16:29:07 +02:00
Luka Murn c76b926387
Delete _report_sidebar.html.erb 
This file is no longer needed from my research.
 2018-05-25 11:04:05 +02:00
Zmago Devetak 280a926554
Merge pull request #1159 from ZmagoD/zd_SCI_2372 
adds data-hook in save_PDF_to_inventory modal [fixes SCI-2372]
 2018-05-24 16:05:56 +02:00
zmagod 06f1daf7a9 rename data-hook 2018-05-24 16:02:56 +02:00
mlorb c4ecfc4d38 Change icons throughout sciNote - navigation, project, task cards 2018-05-22 16:55:58 +02:00
zmagod e97a98f189 adds data-hook in save_PDF_to_inventory modal [fixes SCI-2372] 2018-05-22 14:18:40 +02:00
zmagod e019767e90 refactor save_pdf_to_inventory_item service 2018-05-17 13:17:19 +02:00
zmagod b125863baf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2371 2018-05-17 11:25:33 +02:00
zmagod ca0c8cbb71 fixes typos, fixes pdf rendering 2018-05-17 11:21:34 +02:00
zmagod 4573655ec8 adds save PDF report to inventory feature [fixes SCI-2371] 2018-05-16 09:31:19 +02:00
mlorb ed27a7a62a some extra restyling/unifying off app 2018-05-11 18:02:17 +02:00
mlorb 7df40e56c7 UI/UX restyle - fixes throughout application part one 2018-05-08 16:33:42 +02:00
mlorb d2c0ae241e
Merge pull request #1121 from mlorb/ml-sci-2244 
Update buttons positions and wording throughout app [SCI-2244]
 2018-05-03 11:05:15 +02:00
zmagod e9642cadad Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2304 2018-04-26 14:26:30 +02:00
mlorb 88d5ba369d
Merge branch 'ux-release-1' into ml-sci-2244 2018-04-26 14:07:03 +02:00
Luka Murn cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
mlorb 9e11f3b220 update buttons positions and wording throughout app 2018-04-25 13:57:12 +02:00
zmagod 503ad1ba20 removes samples from views [fixes SCI-2304] 2018-04-24 08:26:55 +02:00
zmagod 199a2a23bf fixes per @mlorb 's request 2018-04-23 12:26:21 +02:00
zmagod e96b690a5b removes reports link from secondary navigation, fix bug with turbolinks 2018-04-20 11:57:52 +02:00
zmagod dafa29d4bf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2124 2018-04-20 10:33:15 +02:00
zmagod 9d282d1800 adds new reports index page [fixes SCI-2124] 2018-04-18 16:47:52 +02:00
mlorb cc34376253 update reports show page to work with new navigation 2018-04-18 14:40:53 +02:00
Zmago Devetak e30b2261a8
Merge pull request #1077 from ZmagoD/zd_SCI_2279 
fixes tiny_mce pdf report in filesystem storage mode [fixes SCI-2279]
 2018-04-05 16:52:16 +02:00
zmagod 218f421dff fixes smart annotation avatar bug in pdf reports[fixes SCI-2282] 2018-04-05 15:31:25 +02:00
zmagod c0cc6c293a fixes tiny_mce pdf report in filesystem storage mode [fixes SCI-2279] 2018-04-05 13:15:32 +02:00
Oleksii Kriuchykhin f656ad1561 Fix fa icons [SCI-2217] 2018-03-30 17:03:44 +02:00
Oleksii Kriuchykhin cc5d8550b1 Refactor file preview modal [SCI-2217] 2018-03-30 11:50:28 +02:00
mlorb bc06542ed7 refactor project navigation 2018-03-22 11:41:33 +01:00
Matej Zrimšek 5bda53eebf Overall refactoring of all canaid permissions and code related to their calls. 2018-02-16 10:54:06 +01:00
Matej Zrimšek e36ec69ca9 Project level permissions refactoring (mostly names). 2018-02-14 13:16:32 +01:00
Matej Zrimšek 13e9a2a132 Corrected some project level permissions; minor refactoring. 2018-02-14 13:16:32 +01:00
Matej Zrimšek d423700e84 Used permissions where they were missing. 2018-02-14 13:16:32 +01:00
Matej Zrimšek 321ddc2916 Grouped existing project permissions and used 'canaid' gem. 2018-02-14 13:09:45 +01:00
zmagod ad742ac2d1 adds nil check in ste_table_element for table name [fixes SCI-2009] 2018-02-05 16:27:04 +01:00
zmagod f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
mlorb a0b2d3f5ef refactor read_team permission 2017-12-14 14:18:14 +01:00
zmagod 066c782cd2 Merge branch 'master' of https://github.com/biosistemika/scinote-web into disable_tiny_mce_asset_unless_step 2017-11-24 16:29:32 +01:00
zmagod 3dc3ed906f fixes bug with embedded images [fixes SCI.1624] 2017-10-02 18:06:42 +02:00
Oleksii Kriuchykhin 6824f9a8bc Improve memory utulization in PDF report generator [SCI-1482] 2017-10-02 11:29:22 +02:00
zmagod 7b9410f02f fixes smart annotations bug in reports [fixes SCI-1328] 2017-06-27 11:26:32 +02:00
zmagod 2b2f513366 fixes export pdf error on production 2017-06-22 16:40:50 +02:00
Matej Zrimšek d49524a26f Set correct repository icon on reports and done some needed refactoring with this. [SCI-1378] 2017-06-20 16:10:50 +02:00
Luka Murn 02dd6636ba Allow saving & editing of reports with repository elements 
Closes SCI-1279.
 2017-06-07 16:55:00 +02:00
Luka Murn b5f6d1da94 Allow custom repositories to be added to reports 2017-06-07 16:54:32 +02:00
mz3944 6b8c8deb16 Merge pull request #634 from mz3944/mz-SCI-414 
Uncompleted steps not added to Reports
 2017-05-23 09:58:05 +02:00
Matej Zrimšek 20265ddd69 Readded result content modal for report creation and updated checkbox hierarchy logic accordingly. [fixes SCI-487] 2017-05-17 18:18:57 +02:00
Matej Zrimšek f78c80b148 Added possibility to add uncompleted steps to report. [closes SCI-414] 2017-05-17 13:25:21 +02:00
Matej Zrimšek 2c6f888cbc Replace present? with more efficient exitst? for report content adding modal. [fixes SCI-487] 2017-05-15 18:56:41 +02:00
Matej Zrimšek 901558c733 Made checkbox logic sitewide available and applied it to other content adding modals in report aswell. [fixes SCI-487] 2017-05-15 18:20:42 +02:00
Matej Zrimšek ba693c65a8 Fixed adding contents to report logic and removed unneeded code. [fixes SCI-487] 2017-05-15 18:20:42 +02:00
Matej Zrimšek dbb79ebab1 Refactoring of specific modals for adding content to report and fixing their inconsistencies. [fixes SCI-487] 2017-05-15 17:43:12 +02:00
Matej Zrimšek b97cb91840 Refactoring of modal for adding content to report. [fixes SCI-487] 2017-05-15 17:43:12 +02:00
Matej Zrimšek 27cfd55ea5 Simplified popup modal for adding contents to report. [fixes SCI-487] 2017-05-15 17:43:12 +02:00
Zmago Devetak 4b816f5322 Merge pull request #568 from ZmagoD/zd_SCI_1119 
Add images to fields with rich text formatting
 2017-05-08 13:06:58 +02:00
zmagod b22350136f adds label to step in report [fixes SCI-488] 2017-05-05 09:45:18 +02:00
Matej Zrimšek a5cffd06f3 Removed all tutorial data from ERB, so that all tutorial code is in JS. [needed for fixing SCI-719] 2017-04-25 16:03:50 +02:00
zmagod 86c6ae3b03 display tinyMCE images in reports 2017-04-25 09:53:35 +02:00
zmagod c25df63a14 add tinymce img importer and refactor input sanitize helper 2017-04-19 09:11:52 +02:00
zmagod 4635a3320d Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1003_add_extends 2017-03-24 16:09:28 +01:00
zmagod c244e69e81 fixed report comments bug [fixes SCI-1100] 2017-03-17 16:59:40 +01:00
zmagod 5d372851d3 fixes reports comment bug [fixes SCI-1100] 2017-03-14 16:24:02 +01:00
zmagod 5c2e9a4b04 adds extends and fixes report methods 2017-03-08 14:14:03 +01:00
Mojca Lorber f84611f558 fix report - checklist items are in separate row than checkboxes 2017-02-22 15:51:26 +01:00
Oleksii Kriuchykhin cf8566df33 Add task complete/uncomplete functionality [SCI-999] 2017-02-10 14:27:20 +01:00
zmagod e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
Luka Murn 0baaf12de3 Re-display images & checkboxes in PDF reports 
Closes SCI-953.
 2017-01-26 10:46:58 +01:00
Oleksii Kriuchykhin c55f3cb99c Add flag to disable simple_format in custom_auto_link [SCI-940] 2017-01-25 17:18:19 +01:00
Oleksii Kriuchykhin 310d8c1920 Refactor smart annotation/auto_link/simple_format rendering [SCI-940] 2017-01-25 17:18:19 +01:00
zmagod 72e13beee3 renamed organizations in views 2017-01-25 12:01:23 +01:00
Luka Murn 53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00