class MyModulesController < ApplicationController include SampleActions include TeamsHelper include InputSanitizeHelper before_action :load_vars, only: %I[show update destroy description due_date protocols results samples activities activities_tab assign_samples unassign_samples delete_samples toggle_task_state samples_index archive complete_my_module repository repository_index assign_repository_records unassign_repository_records] before_action :load_vars_nested, only: %I[new create] before_action :load_repository, only: %I[assign_repository_records unassign_repository_records] before_action :check_edit_permissions, only: %I[update description due_date] before_action :check_destroy_permissions, only: :destroy before_action :check_view_info_permissions, only: :show before_action :check_view_activities_permissions, only: %I[activities activities_tab] before_action :check_view_protocols_permissions, only: :protocols before_action :check_view_results_permissions, only: :results before_action :check_view_samples_permissions, only: %I[samples samples_index] before_action :check_view_archive_permissions, only: :archive before_action :check_assign_samples_permissions, only: :assign_samples before_action :check_unassign_samples_permissions, only: :unassign_samples before_action :check_complete_my_module_perimission, only: :complete_my_module before_action :check_assign_repository_records_permissions, only: :assign_repository_records before_action :check_unassign_repository_records_permissions, only: :unassign_repository_records layout 'fluid'.freeze # Define submit actions constants (used in routing) ASSIGN_SAMPLES = 'Assign'.freeze UNASSIGN_SAMPLES = 'Unassign'.freeze # Action defined in SampleActions DELETE_SAMPLES = 'Delete'.freeze def show respond_to do |format| format.json { render :json => { :html => render_to_string({ :partial => "show.html.erb" }) } } end end # Description modal window in full-zoom canvas def description respond_to do |format| format.html format.json { render json: { html: render_to_string({ partial: "description.html.erb" }), title: t('my_modules.description.title', module: escape_input(@my_module.name)) } } end end def activities @last_activity_id = params[:from].to_i || 0 @per_page = 10 @activities = @my_module.last_activities(@last_activity_id, @per_page +1 ) @more_activities_url = "" @overflown = @activities.length > @per_page @activities = @my_module.last_activities(@last_activity_id, @per_page) if @activities.count > 0 @more_activities_url = url_for( controller: 'my_modules', action: 'activities', format: :json, from: @activities.last.id) end respond_to do |format| format.html format.json { # 'activites' partial includes header and form for adding older # activities. 'list' partial is used for showing more activities. partial = "activities.html.erb" if @activities.last.id > 0 partial = "my_modules/activities/list_activities.html.erb" end render :json => { :per_page => @per_page, :results_number => @activities.length, :more_url => @more_activities_url, :html => render_to_string({ :partial => partial }) } } end end # Different controller for showing activities inside tab def activities_tab @activities = @my_module.last_activities(1, @per_page) respond_to do |format| format.html format.json { render :json => { :html => render_to_string({ :partial => "activities.html.erb" }) } } end end # Due date modal window in full-zoom canvas def due_date respond_to do |format| format.html format.json { render json: { html: render_to_string({ partial: "due_date.html.erb" }), title: t('my_modules.due_date.title', module: escape_input(@my_module.name)) } } end end def update @my_module.assign_attributes(my_module_params) @my_module.last_modified_by = current_user description_changed = @my_module.description_changed? restored = false if @my_module.archived_changed?(from: false, to: true) saved = @my_module.archive(current_user) if saved # Currently not in use Activity.create( type_of: :archive_module, project: @my_module.experiment.project, experiment: @my_module.experiment, my_module: @my_module, user: current_user, message: t( 'activities.archive_module', user: current_user.full_name, module: @my_module.name ) ) end elsif @my_module.archived_changed?(from: true, to: false) saved = @my_module.restore(current_user) if saved restored = true Activity.create( type_of: :restore_module, project: @my_module.experiment.project, experiment: @my_module.experiment, my_module: @my_module, user: current_user, message: t( 'activities.restore_module', user: current_user.full_name, module: @my_module.name ) ) end else saved = @my_module.save if saved and description_changed then Activity.create( type_of: :change_module_description, project: @my_module.experiment.project, experiment: @my_module.experiment, my_module: @my_module, user: current_user, message: t( "activities.change_module_description", user: current_user.full_name, module: @my_module.name ) ) end end respond_to do |format| if restored format.html do flash[:success] = t( 'my_modules.module_archive.restored_flash', module: @my_module.name ) redirect_to module_archive_experiment_path(@my_module.experiment) end elsif saved format.json { alerts = [] alerts << 'alert-green' if @my_module.completed? unless @my_module.completed? alerts << 'alert-red' if @my_module.is_overdue? alerts << 'alert-yellow' if @my_module.is_one_day_prior? end render json: { status: :ok, due_date_label: render_to_string( partial: "my_modules/due_date_label.html.erb", locals: { my_module: @my_module } ), module_header_due_date_label: render_to_string( partial: "my_modules/module_header_due_date_label.html.erb", locals: { my_module: @my_module } ), description_label: render_to_string( partial: "my_modules/description_label.html.erb", locals: { my_module: @my_module } ), alerts: alerts } } else format.json { render json: @my_module.errors, status: :unprocessable_entity } end end end def protocols @protocol = @my_module.protocol current_team_switch(@protocol.team) end def results current_team_switch(@my_module .experiment .project .team) end def samples @samples_index_link = samples_index_my_module_path(@my_module, format: :json) @team = @my_module.experiment.project.team end def repository @repository = Repository.find_by_id(params[:repository_id]) render_403 if @repository.nil? || !can_read_team?(@repository.team) end def archive @archived_results = @my_module.archived_results current_team_switch(@my_module .experiment .project .team) end # Submit actions def assign_samples if params[:sample_ids].present? samples = [] params[:sample_ids].each do |id| sample = Sample.find_by_id(id) sample.last_modified_by = current_user sample.save if sample samples << sample end end task_names = [] new_samples = [] @my_module.downstream_modules.each do |my_module| new_samples = samples.select { |el| my_module.samples.exclude?(el) } my_module.samples.push(*new_samples) task_names << my_module.name end if new_samples.any? Activity.create( type_of: :assign_sample, project: @my_module.experiment.project, experiment: @my_module.experiment, my_module: @my_module, user: current_user, message: I18n.t( 'activities.assign_sample', user: current_user.full_name, tasks: task_names.join(', '), samples: new_samples.map(&:name).join(', ') ) ) end end redirect_to samples_my_module_path(@my_module) end def unassign_samples if params[:sample_ids].present? samples = [] params[:sample_ids].each do |id| sample = Sample.find_by_id(id) sample.last_modified_by = current_user sample.save if sample && @my_module.samples.include?(sample) samples << sample end end task_names = [] @my_module.downstream_modules.each do |my_module| task_names << my_module.name my_module.samples.destroy(samples & my_module.samples) end if samples.any? Activity.create( type_of: :unassign_sample, project: @my_module.experiment.project, experiment: @my_module.experiment, my_module: @my_module, user: current_user, message: I18n.t( 'activities.unassign_sample', user: current_user.full_name, tasks: task_names.join(', '), samples: samples.map(&:name).join(', ') ) ) end end redirect_to samples_my_module_path(@my_module) end # AJAX actions def samples_index @team = @my_module.experiment.project.team respond_to do |format| format.html format.json do render json: ::SampleDatatable.new(view_context, @team, nil, @my_module, nil, current_user) end end end # AJAX actions def repository_index @repository = Repository.find_by_id(params[:repository_id]) if @repository.nil? || !can_read_team?(@repository.team) render_403 else respond_to do |format| format.html format.json do render json: ::RepositoryDatatable.new(view_context, @repository, @my_module, current_user) end end end end # Submit actions def assign_repository_records if params[:selected_rows].present? && params[:repository_id].present? records_names = [] params[:selected_rows].each do |id| record = RepositoryRow.find_by_id(id) next if !record || @my_module.repository_rows.include?(record) record.last_modified_by = current_user record.save records_names << record.name MyModuleRepositoryRow.create!( my_module: @my_module, repository_row: record, assigned_by: current_user ) end if records_names.any? Activity.create( type_of: :assign_repository_record, project: @project, experiment: @experiment, my_module: @my_module, user: current_user, message: I18n.t( 'activities.assign_repository_records', user: current_user.full_name, task: @my_module.name, repository: @repository.name, records: records_names.join(', ') ) ) flash = I18n.t('repositories.assigned_records_flash', records: records_names.join(', ')) respond_to do |format| format.json { render json: { flash: flash }, status: :ok } end else respond_to do |format| format.json do render json: { flash: t('repositories.no_records_assigned_flash') }, status: :bad_request end end end end end def unassign_repository_records if params[:selected_rows].present? && params[:repository_id].present? records = [] params[:selected_rows].each do |id| record = RepositoryRow.find_by_id(id) next unless record && @my_module.repository_rows.include?(record) record.last_modified_by = current_user record.save records << record end @my_module.repository_rows.destroy(records & @my_module.repository_rows) if records.any? Activity.create( type_of: :unassign_repository_record, project: @project, experiment: @experiment, my_module: @my_module, user: current_user, message: I18n.t( 'activities.unassign_repository_records', user: current_user.full_name, task: @my_module.name, repository: @repository.name, records: records.map(&:name).join(', ') ) ) flash = I18n.t('repositories.unassigned_records_flash', records: records.map(&:name).join(', ')) respond_to do |format| format.json { render json: { flash: flash }, status: :ok } end else respond_to do |format| format.json do render json: { flash: t('repositories.no_records_unassigned_flash') }, status: :bad_request end end end end end # Complete/uncomplete task def toggle_task_state respond_to do |format| if can_complete_module(@my_module) @my_module.completed? ? @my_module.uncomplete : @my_module.complete completed = @my_module.completed? if @my_module.save task_completion_activity # Render new button HTML if completed new_btn_partial = 'my_modules/state_button_uncomplete.html.erb' else new_btn_partial = 'my_modules/state_button_complete.html.erb' end format.json do render json: { new_btn: render_to_string(partial: new_btn_partial), completed: completed, module_header_due_date_label: render_to_string( partial: 'my_modules/module_header_due_date_label.html.erb', locals: { my_module: @my_module } ), module_state_label: render_to_string( partial: 'my_modules/module_state_label.html.erb', locals: { my_module: @my_module } ) } end else format.json { render json: {}, status: :unprocessable_entity } end else format.json { render json: {}, status: :unauthorized } end end end def complete_my_module respond_to do |format| if @my_module.uncompleted? && @my_module.check_completness_status @my_module.complete @my_module.save task_completion_activity format.json do render json: { task_button_title: t('my_modules.buttons.uncomplete'), module_header_due_date_label: render_to_string( partial: 'my_modules/module_header_due_date_label.html.erb', locals: { my_module: @my_module } ), module_state_label: render_to_string( partial: 'my_modules/module_state_label.html.erb', locals: { my_module: @my_module } ) }, status: :ok end else format.json { render json: {}, status: :unprocessable_entity } end end end private def task_completion_activity completed = @my_module.completed? str = 'activities.uncomplete_module' str = 'activities.complete_module' if completed message = t(str, user: current_user.full_name, module: @my_module.name) Activity.create( user: current_user, project: @project, experiment: @experiment, my_module: @my_module, message: message, type_of: completed ? :complete_task : :uncomplete_task ) end def load_vars @my_module = MyModule.find_by_id(params[:id]) if @my_module @experiment = @my_module.experiment @project = @my_module.experiment.project if @experiment else render_404 end end def load_repository @repository = Repository.find_by_id(params[:repository_id]) render_404 unless @repository && can_read_team?(@repository.team) end def check_edit_permissions unless can_edit_module(@my_module) render_403 end end def check_destroy_permissions unless can_archive_module(@my_module) render_403 end end def check_view_info_permissions unless can_view_module_info(@my_module) render_403 end end def check_view_activities_permissions unless can_view_module_activities(@my_module) render_403 end end def check_view_protocols_permissions unless can_view_module_protocols(@my_module) render_403 end end def check_view_results_permissions unless can_view_results_in_module(@my_module) render_403 end end def check_view_samples_permissions unless can_view_module_samples(@my_module) render_403 end end def check_view_archive_permissions unless can_view_module_archive(@my_module) render_403 end end def check_assign_samples_permissions unless can_add_samples_to_module(@my_module) render_403 end end def check_unassign_samples_permissions unless can_delete_samples_from_module(@my_module) render_403 end end def check_assign_repository_records_permissions render_403 unless can_assign_repository_records(@my_module, @repository) end def check_unassign_repository_records_permissions render_403 unless can_unassign_repository_records(@my_module, @repository) end def check_complete_my_module_perimission render_403 unless can_complete_module(@my_module) end def my_module_params params.require(:my_module).permit(:name, :description, :due_date, :archived) end end