# frozen_string_literal: true class Protocol < ApplicationRecord ID_PREFIX = 'PT' include ArchivableModel include PrefixedIdModel SEARCHABLE_ATTRIBUTES = ['protocols.name', 'protocols.description', 'protocols.authors', 'protocol_keywords.name', PREFIXED_ID_SQL].freeze REPOSITORY_TYPES = %i(in_repository_published_original in_repository_draft in_repository_published_version).freeze include SearchableModel include RenamingUtil include SearchableByNameModel include Assignable include PermissionCheckableModel include TinyMceImages after_create :auto_assign_protocol_members, if: :visible? after_destroy :decrement_linked_children after_save :update_user_assignments, if: -> { saved_change_to_visibility? && in_repository? } after_save :update_linked_children skip_callback :create, :after, :create_users_assignments, if: -> { in_module? } enum visibility: { hidden: 0, visible: 1 } enum protocol_type: { unlinked: 0, linked: 1, in_repository_published_original: 2, in_repository_draft: 3, in_repository_published_version: 4 } auto_strip_attributes :name, :description, nullify: false # Name is required when its actually specified (i.e. :in_repository? is true) validates :name, length: { maximum: Constants::NAME_MAX_LENGTH } validates :description, length: { maximum: Constants::RICH_TEXT_MAX_LENGTH } validates :team, presence: true validates :protocol_type, presence: true validate :prevent_update, on: :update, if: lambda { # skip check if only public role of visibility changed (changes.keys | %w(default_public_user_role_id visibility)).length != 2 && in_repository_published? && !protocol_type_changed?(from: 'in_repository_draft') && !archived_changed? } with_options if: :in_module? do validates :my_module, presence: true validates :archived_by, absence: true validates :archived_on, absence: true end with_options if: :linked? do validate :linked_parent_type_constrain validates :added_by, presence: true validates :parent, presence: true validates :parent_updated_at, presence: true end with_options if: :in_repository? do validates :name, presence: true validates :added_by, presence: true validates :my_module, absence: true validates :parent_updated_at, absence: true validate :version_number_constraint end with_options if: :in_repository_published_version? do validates :parent, presence: true validate :versions_same_name_constrain end with_options if: :in_repository_draft? do # Only one draft can exist for each protocol validate :ensure_single_draft validate :versions_same_name_constrain end with_options if: -> { in_repository? && !parent } do |protocol| # Active protocol must have unique name inside its team protocol .validates_uniqueness_of :name, case_sensitive: false, scope: :team, conditions: lambda { where( protocol_type: [ Protocol.protocol_types[:in_repository_published_original], Protocol.protocol_types[:in_repository_draft] ], parent_id: nil ) } end with_options if: -> { in_repository? && archived? && !previous_version } do |protocol| protocol.validates :archived_by, presence: true protocol.validates :archived_on, presence: true end belongs_to :added_by, class_name: 'User', inverse_of: :added_protocols, optional: true belongs_to :last_modified_by, class_name: 'User', optional: true belongs_to :my_module, inverse_of: :protocols, optional: true belongs_to :team, inverse_of: :protocols belongs_to :default_public_user_role, class_name: 'UserRole', optional: true belongs_to :previous_version, class_name: 'Protocol', inverse_of: :next_version, optional: true belongs_to :parent, class_name: 'Protocol', optional: true belongs_to :archived_by, class_name: 'User', inverse_of: :archived_protocols, optional: true belongs_to :restored_by, class_name: 'User', inverse_of: :restored_protocols, optional: true belongs_to :published_by, class_name: 'User', inverse_of: :published_protocols, optional: true has_many :linked_children, class_name: 'Protocol', foreign_key: 'parent_id' has_one :next_version, class_name: 'Protocol', foreign_key: 'previous_version_id', inverse_of: :previous_version, dependent: :destroy has_one :latest_published_version, lambda { in_repository_published_version.select('DISTINCT ON (parent_id) *') .order(:parent_id, version_number: :desc) }, class_name: 'Protocol', foreign_key: 'parent_id' has_one :draft, -> { in_repository_draft.select('DISTINCT ON (parent_id) *').order(:parent_id) }, class_name: 'Protocol', foreign_key: 'parent_id' has_many :published_versions, -> { in_repository_published_version }, class_name: 'Protocol', foreign_key: 'parent_id' has_many :protocol_protocol_keywords, inverse_of: :protocol, dependent: :destroy has_many :protocol_keywords, through: :protocol_protocol_keywords has_many :steps, inverse_of: :protocol, dependent: :destroy def self.search(user, include_archived, query = nil, page = 1, _current_team = nil, options = {}) team_ids = Team.joins(:user_teams) .where(user_teams: { user_id: user.id }) .distinct .pluck(:id) module_ids = MyModule.search(user, include_archived, nil, Constants::SEARCH_NO_LIMIT) .pluck(:id) where_str = '(protocol_type IN (?) AND my_module_id IN (?)) OR ' \ '(protocol_type = ? AND protocols.team_id IN (?) AND ' \ 'added_by_id = ?) OR (protocol_type = ? AND protocols.team_id IN (?))' if include_archived where_str += ' OR (protocol_type = ? AND protocols.team_id IN (?) ' \ 'AND added_by_id = ?)' new_query = Protocol .where( where_str, [Protocol.protocol_types[:unlinked], Protocol.protocol_types[:linked]], module_ids, Protocol.protocol_types[:in_repository_private], team_ids, user.id, Protocol.protocol_types[:in_repository_public], team_ids, Protocol.protocol_types[:in_repository_archived], team_ids, user.id ) else new_query = Protocol .where( where_str, [Protocol.protocol_types[:unlinked], Protocol.protocol_types[:linked]], module_ids, Protocol.protocol_types[:in_repository_private], team_ids, user.id, Protocol.protocol_types[:in_repository_public], team_ids ) end new_query = new_query .distinct .joins('LEFT JOIN protocol_protocol_keywords ON ' \ 'protocols.id = protocol_protocol_keywords.protocol_id') .joins('LEFT JOIN protocol_keywords ' \ 'ON protocol_keywords.id = ' \ 'protocol_protocol_keywords.protocol_keyword_id') .where_attributes_like(SEARCHABLE_ATTRIBUTES, query, options) # Show all results if needed if page == Constants::SEARCH_NO_LIMIT new_query else new_query.limit(Constants::SEARCH_LIMIT).offset((page - 1) * Constants::SEARCH_LIMIT) end end def self.viewable_by_user(user, teams) where(my_module: MyModule.viewable_by_user(user, teams)) .or(where(team: teams) .where('protocol_type = 3 OR '\ '(protocol_type = 2 AND added_by_id = :user_id)', user_id: user.id)) end def self.filter_by_teams(teams = []) teams.blank? ? self : where(team: teams) end def insert_step(step, position) ActiveRecord::Base.transaction do steps.where('position >= ?', position).desc_order.each do |s| s.update!(position: s.position + 1) end step.position = position step.protocol = self step.save! end step end def created_by in_module? ? my_module.created_by : added_by end def published_versions_with_original team.protocols .in_repository_published_version .where(parent: self) .or(team.protocols.in_repository_published_original.where(id: id)) end def initial_draft? in_repository_draft? && parent.blank? end def latest_published_version_or_self latest_published_version || self end def permission_parent in_module? ? my_module : team end def linked_modules MyModule.joins(:protocols).where('protocols.parent_id = ?', id) end def linked_experiments(linked_mod) Experiment.where('id IN (?)', linked_mod.pluck(:experiment_id).uniq) end def linked_projects(linked_exp) Project.where('id IN (?)', linked_exp.pluck(:project_id).uniq) end def self.new_blank_for_module(my_module) Protocol.new( team: my_module.experiment.project.team, protocol_type: :unlinked, my_module: my_module ) end # Deep-clone given array of assets def self.deep_clone_assets(assets_to_clone) ActiveRecord::Base.no_touching do assets_to_clone.each do |src_id, dest_id| src = Asset.find_by(id: src_id) dest = Asset.find_by(id: dest_id) dest.destroy! if src.blank? && dest.present? next unless src.present? && dest.present? # Clone file src.duplicate_file(dest) end end end def self.clone_contents(src, dest, current_user, clone_keywords, only_contents = false) dest.update(description: src.description, name: src.name) unless only_contents src.clone_tinymce_assets(dest, dest.team) # Update keywords if clone_keywords src.protocol_keywords.each do |keyword| ProtocolProtocolKeyword.create( protocol: dest, protocol_keyword: keyword ) end end # Copy steps src.steps.each do |step| step.duplicate(dest, current_user, step_position: step.position) end end def in_repository_active? in_repository? && active? end def in_repository? in_repository_published? || in_repository_draft? end def in_repository_published? in_repository_published_original? || in_repository_published_version? end def in_module? unlinked? || linked? end def linked_no_diff? linked? && updated_at == parent_updated_at && parent.updated_at == parent_updated_at end def newer_than_parent? linked? && parent.updated_at == parent_updated_at && updated_at > parent_updated_at end def parent_newer? linked? && updated_at == parent_updated_at && parent.updated_at > parent_updated_at end def parent_and_self_newer? linked? && parent.updated_at > parent_updated_at && updated_at > parent_updated_at end def number_of_steps steps.count end def completed_steps steps.where(completed: true) end def first_step_id steps.find_by(position: 0)&.id end def space_taken st = 0 steps.find_each do |step| st += step.space_taken end st end def make_private(user) # Don't update "updated_at" timestamp self.record_timestamps = false self.added_by = user self.published_on = nil self.archived_by = nil self.archived_on = nil self.restored_by = nil self.restored_on = nil self.protocol_type = Protocol.protocol_types[:in_repository_private] result = save if result Activities::CreateActivityService .call(activity_type: :move_protocol_in_repository, owner: user, subject: self, team: team, message_items: { protocol: id, storage: I18n.t('activities.protocols.team_to_my_message') }) end result end def archive(user) return nil unless can_destroy? # We keep published_on present, so we know (upon restoring) # where the protocol was located self.archived_by = user self.archived_on = Time.now self.restored_by = nil self.restored_on = nil self.archived = true result = save # Update all module protocols that had # parent set to this protocol if result reload Protocol.where( parent: self, protocol_type: %i(in_repository_draft in_repository_published_version) ).update( archived_by: user, archived_on: archived_on, restored_by: nil, restored_on: nil, archived: true ) Activities::CreateActivityService .call(activity_type: :archive_protocol_in_repository, owner: user, subject: self, team: team, message_items: { protocol: id }) end result end def restore(user) self.archived_by = nil self.archived_on = nil self.restored_by = user self.restored_on = Time.now self.archived = false result = save if result reload Protocol.where( parent: self, protocol_type: %i(in_repository_draft in_repository_published_version) ).update( archived_by: nil, archived_on: nil, restored_by: user, restored_on: restored_on, archived: false ) Activities::CreateActivityService .call(activity_type: :restore_protocol_in_repository, owner: user, subject: self, team: team, message_items: { protocol: id }) end result end def update_keywords(keywords, user) result = true begin Protocol.transaction do self.record_timestamps = false # First, destroy all keywords protocol_protocol_keywords.destroy_all if keywords.present? keywords.each do |kw_name| kw = ProtocolKeyword.find_or_create_by(name: kw_name, team: team) protocol_keywords << kw end update(last_modified_by: user) end end rescue StandardError result = false end result end def unlink self.parent = nil self.parent_updated_at = nil self.protocol_type = Protocol.protocol_types[:unlinked] save! end def update_parent(current_user) ActiveRecord::Base.no_touching do # First, destroy parent's step contents parent.destroy_contents parent.reload # Now, clone step contents Protocol.clone_contents(self, parent, current_user, false) end # Lastly, update the metadata parent.reload parent.record_timestamps = false parent.updated_at = updated_at parent.save! self.record_timestamps = false self.parent_updated_at = updated_at save! end def update_from_parent(current_user, source) ActiveRecord::Base.no_touching do # First, destroy step contents destroy_contents # Now, clone parent's step contents Protocol.clone_contents(source, self, current_user, false) end # Lastly, update the metadata reload self.record_timestamps = false self.updated_at = source.published_on self.parent_updated_at = source.published_on self.added_by = current_user self.last_modified_by = current_user self.parent = source self.linked_at = Time.zone.now save! end def load_from_repository(source, current_user) ActiveRecord::Base.no_touching do # First, destroy step contents destroy_contents # Now, clone source's step contents Protocol.clone_contents(source, self, current_user, false) end # Lastly, update the metadata reload self.name = source.name self.record_timestamps = false self.updated_at = source.published_on self.parent = source self.parent_updated_at = source.published_on self.added_by = current_user self.last_modified_by = current_user self.linked_at = Time.zone.now self.protocol_type = Protocol.protocol_types[:linked] save! end def copy_to_repository(clone, current_user) clone.team = team clone.protocol_type = :in_repository_draft clone.added_by = current_user clone.last_modified_by = current_user clone.description = description # Don't proceed further if clone is invalid return clone if clone.invalid? ActiveRecord::Base.no_touching do # Okay, clone seems to be valid: let's clone it clone = deep_clone(clone, current_user) end clone end def save_as_draft(current_user) parent_protocol = parent || self version = (parent_protocol.latest_published_version || self).version_number + 1 draft = dup draft.version_number = version draft.protocol_type = :in_repository_draft draft.parent = parent_protocol draft.published_by = nil draft.published_on = nil draft.version_comment = nil draft.previous_version = self draft.last_modified_by = current_user return draft if draft.invalid? ActiveRecord::Base.no_touching do draft = deep_clone(draft, current_user) end draft end def deep_clone_my_module(my_module, current_user) clone = Protocol.new_blank_for_module(my_module) clone.name = name clone.authors = authors clone.description = description clone.protocol_type = protocol_type if linked? clone.added_by = current_user clone.parent = parent clone.parent_updated_at = parent_updated_at end deep_clone(clone, current_user) end def deep_clone_repository(current_user) clone = Protocol.new( name: name, authors: authors, description: description, added_by: current_user, last_modified_by: current_user, team: team, protocol_type: :in_repository_draft, skip_user_assignments: true ) cloned = deep_clone(clone, current_user) if cloned deep_clone_user_assginments(clone) Activities::CreateActivityService .call(activity_type: :copy_protocol_in_repository, owner: current_user, subject: self, team: team, project: nil, message_items: { protocol_new: clone.id, protocol_original: id }) end cloned end def destroy_contents # Calculate total space taken by the protocol st = space_taken steps.order(position: :desc).each do |step| step.step_orderable_elements.delete_all step.destroy! end # Release space taken by the step team.release_space(st) team.save # Reload protocol reload end def can_destroy? steps.map(&:can_destroy?).all? end def create_public_user_assignments!(assigned_by) public_role = default_public_user_role || UserRole.find_predefined_viewer_role team.user_assignments.where.not(user: assigned_by).find_each do |team_user_assignment| new_user_assignment = user_assignments.find_or_initialize_by(user: team_user_assignment.user) next if new_user_assignment.manually_assigned? new_user_assignment.user_role = public_role new_user_assignment.assigned_by = assigned_by new_user_assignment.assigned = :automatically new_user_assignment.save! end end def child_version_protocols published_versions.or(Protocol.where(id: draft&.id)) end def sync_child_protocol_user_assignment(user_assignment, child_protocol_id = nil) # Copy user assignments to child protocol(s) Protocol.transaction(requires_new: true) do # Reload to ensure a potential new draft is also included in child versions reload ( # all or single child version protocol child_protocol_id ? child_version_protocols.where(id: child_protocol_id) : child_version_protocols ).find_each do |child_protocol| child_assignment = child_protocol.user_assignments.find_or_initialize_by( user: user_assignment.user ) if user_assignment.destroyed? child_assignment.destroy! if child_assignment.persisted? next end child_assignment.update!( user_assignment.attributes.slice( 'user_role_id', 'assigned', 'assigned_by_id', 'team_id' ) ) end end end private def after_user_assignment_changed(user_assignment) return unless in_repository_published_original? sync_child_protocol_user_assignment(user_assignment) end def auto_assign_protocol_members UserAssignments::ProtocolGroupAssignmentJob.perform_now( team, self, last_modified_by || created_by ) end def update_user_assignments case visibility when 'visible' create_public_user_assignments!(added_by) when 'hidden' automatic_user_assignments.where.not(user: added_by).destroy_all end end def deep_clone(clone, current_user) # Save cloned protocol first success = clone.save # Rename protocol if needed unless success rename_record(clone, :name) success = clone.save end raise ActiveRecord::RecordNotSaved unless success Protocol.clone_contents(self, clone, current_user, true, true) clone.reload clone end def update_linked_children # Increment/decrement the parent's nr of linked children if saved_change_to_parent_id? unless parent_id_before_last_save.nil? p = Protocol.find_by_id(parent_id_before_last_save) p.record_timestamps = false p.decrement!(:nr_of_linked_children) end unless parent_id.nil? parent.record_timestamps = false parent.increment!(:nr_of_linked_children) end end end def decrement_linked_children parent.decrement!(:nr_of_linked_children) if parent.present? end def prevent_update errors.add(:base, I18n.t('activerecord.errors.models.protocol.unchangable')) end def linked_parent_type_constrain unless parent.in_repository_published? errors.add(:base, I18n.t('activerecord.errors.models.protocol.wrong_parent_type')) end end def version_parent_type_constrain unless parent.in_repository_published_original? errors.add(:base, I18n.t('activerecord.errors.models.protocol.wrong_parent_type')) end end def draft_parent_type_constrain unless parent.in_repository_published_original? errors.add(:base, I18n.t('activerecord.errors.models.protocol.wrong_parent_type')) end end def versions_same_name_constrain if parent.present? && !parent.name.eql?(name) errors.add(:base, I18n.t('activerecord.errors.models.protocol.wrong_version_name')) end end def version_number_constraint if Protocol.where(protocol_type: Protocol::REPOSITORY_TYPES) .where.not(id: id) .where(version_number: version_number) .where('(parent_id = :parent_id OR id = :parent_id)', parent_id: (parent_id || id)).any? errors.add(:base, I18n.t('activerecord.errors.models.protocol.wrong_version_number')) end end def ensure_single_draft if parent&.draft && parent.draft.id != id errors.add(:base, I18n.t('activerecord.errors.models.protocol.wrong_parent_draft_number')) end end end