class ExperimentsController < ApplicationController include SampleActions include TeamsHelper include InputSanitizeHelper include ActionView::Helpers::TextHelper include ApplicationHelper include Rails.application.routes.url_helpers before_action :set_experiment, except: %i(new create) before_action :set_project, only: %i(new create samples_index samples module_archive clone_modal move_modal delete_samples) before_action :load_projects_tree, only: %i(canvas samples module_archive) before_action :check_view_permissions, only: %i(canvas module_archive) before_action :check_manage_permissions, only: :edit before_action :check_archive_permissions, only: :archive before_action :check_clone_permissions, only: %i(clone_modal clone) before_action :check_move_permissions, only: %i(move_modal move) layout 'fluid'.freeze # Action defined in SampleActions DELETE_SAMPLES = 'Delete'.freeze def new @experiment = Experiment.new respond_to do |format| format.json do render json: { html: render_to_string( partial: 'new_modal.html.erb' ) } end end end def create @experiment = Experiment.new(experiment_params) @experiment.created_by = current_user @experiment.last_modified_by = current_user @experiment.project = @project if @experiment.save experiment_annotation_notification Activity.create( type_of: :create_experiment, project: @experiment.project, experiment: @experiment, user: current_user, message: I18n.t( 'activities.create_experiment', user: current_user.full_name, experiment: @experiment.name ) ) flash[:success] = t('experiments.create.success_flash', experiment: @experiment.name) respond_to do |format| format.json do render json: { path: canvas_experiment_url(@experiment) }, status: :ok end end else respond_to do |format| format.json do render json: @experiment.errors, status: :unprocessable_entity end end end end def canvas @project = @experiment.project @active_modules = @experiment.active_modules .includes(:tags, :inputs, :outputs) current_team_switch(@project.team) end def edit respond_to do |format| format.json do render json: { html: render_to_string( partial: 'edit_modal.html.erb' ) } end end end def update render_403 && return unless if experiment_params[:archived] == 'false' can_restore_experiment?(@experiment) else can_manage_experiment?(@experiment) end old_text = @experiment.description @experiment.update_attributes(experiment_params) @experiment.last_modified_by = current_user if @experiment.save experiment_annotation_notification(old_text) Activity.create( type_of: :edit_experiment, project: @experiment.project, experiment: @experiment, user: current_user, message: I18n.t( 'activities.edit_experiment', user: current_user.full_name, experiment: @experiment.name ) ) @experiment.touch(:workflowimg_updated_at) flash[:success] = t('experiments.update.success_flash', experiment: @experiment.name) respond_to do |format| format.json do render json: {}, status: :ok end format.html do redirect_to project_path(@experiment.project) end end else flash[:alert] = t('experiments.update.error_flash') respond_to do |format| format.json do render json: @experiment.errors, status: :unprocessable_entity end format.html do redirect_back(fallback_location: root_path) end end end end def archive @experiment.archived = true @experiment.archived_by = current_user @experiment.archived_on = DateTime.now if @experiment.save Activity.create( type_of: :archive_experiment, project: @experiment.project, experiment: @experiment, user: current_user, message: I18n.t( 'activities.archive_experiment', user: current_user.full_name, experiment: @experiment.name ) ) flash[:success] = t('experiments.archive.success_flash', experiment: @experiment.name) redirect_to project_path(@experiment.project) else flash[:alert] = t('experiments.archive.error_flash') redirect_back(fallback_location: root_path) end end # GET: clone_modal_experiment_path(id) def clone_modal @projects = @experiment.projects_with_role_above_user(current_user) respond_to do |format| format.json do render json: { html: render_to_string( partial: 'clone_modal.html.erb' ) } end end end # POST: clone_experiment(id) def clone project = Project.find_by_id(params[:experiment].try(:[], :project_id)) # Try to clone the experiment success = true if @experiment.projects_with_role_above_user(current_user).include?(project) cloned_experiment = @experiment.deep_clone_to_project(current_user, project) success = cloned_experiment.valid? # Create workflow image cloned_experiment.delay.generate_workflow_img if success else success = false end if success Activity.create( type_of: :clone_experiment, project: project, experiment: @experiment, user: current_user, message: I18n.t( 'activities.clone_experiment', user: current_user.full_name, experiment_new: cloned_experiment.name, experiment_original: @experiment.name ) ) flash[:success] = t('experiments.clone.success_flash', experiment: @experiment.name) redirect_to canvas_experiment_path(cloned_experiment) else flash[:error] = t('experiments.clone.error_flash', experiment: @experiment.name) redirect_to project_path(@experiment.project) end end # GET: move_modal_experiment_path(id) def move_modal @projects = @experiment.moveable_projects(current_user) respond_to do |format| format.json do render json: { html: render_to_string( partial: 'move_modal.html.erb' ) } end end end # POST: move_experiment(id) def move project = Project.find_by_id(params[:experiment].try(:[], :project_id)) old_project = @experiment.project # Try to move the experiment success = true if @experiment.moveable_projects(current_user).include?(project) success = @experiment.move_to_project(project) else success = false end if success Activity.create( type_of: :move_experiment, project: project, experiment: @experiment, user: current_user, message: I18n.t( 'activities.move_experiment', user: current_user.full_name, experiment: @experiment.name, project_new: project.name, project_original: old_project.name ) ) flash[:success] = t('experiments.move.success_flash', experiment: @experiment.name) respond_to do |format| format.json do render json: { path: canvas_experiment_url(@experiment) }, status: :ok end end else respond_to do |format| format.json do render json: { message: t('experiments.move.error_flash', experiment: escape_input(@experiment.name)) }, status: :unprocessable_entity end end end end def module_archive end def samples @samples_index_link = samples_index_experiment_path(@experiment, format: :json) @team = @experiment.project.team end def samples_index @team = @experiment.project.team respond_to do |format| format.html format.json do render json: ::SampleDatatable.new(view_context, @team, nil, nil, @experiment, current_user) end end end def updated_img respond_to do |format| format.json do if @experiment.workflowimg_updated_at.to_i >= params[:timestamp].to_time.to_i render json: {}, status: 200 else render json: {}, status: 404 end end end end def fetch_workflow_img respond_to do |format| format.json do render json: { workflowimg: render_to_string( partial: 'projects/show/workflow_img.html.erb' ) } end end end private def set_experiment @experiment = Experiment.find_by_id(params[:id]) render_404 unless @experiment end def set_project @project = Project.find_by_id(params[:project_id]) || @experiment.project render_404 unless @project end def experiment_params params.require(:experiment).permit(:name, :description, :archived) end def load_projects_tree # Switch to correct team current_team_switch(@experiment.project.team) unless @experiment.project.nil? @projects_tree = current_user.projects_tree(current_team, nil) end def check_view_permissions render_403 unless can_read_experiment?(@experiment) end def check_manage_permissions render_403 unless can_manage_experiment?(@experiment) end def check_archive_permissions render_403 unless can_archive_experiment?(@experiment) end def check_clone_permissions render_403 unless can_clone_experiment?(@experiment) end def check_move_permissions render_403 unless can_move_experiment?(@experiment) end def experiment_annotation_notification(old_text = nil) smart_annotation_notification( old_text: old_text, new_text: @experiment.description, title: t('notifications.experiment_annotation_title', experiment: @experiment.name, user: current_user.full_name), message: t('notifications.experiment_annotation_message_html', project: link_to(@experiment.project.name, project_url(@experiment.project)), experiment: link_to(@experiment.name, canvas_experiment_url(@experiment))) ) end end