@import "colors";
@import "mixins";

/** Layout **/

body,
#activity-modal,
#main-nav,
#notifications,
#notifications .alert {
  min-width: 320px;
}

// Word wrapping everywhere, except for table header of "datatables.js"
body,
table.dataTable td {
  text-overflow: ellipsis;
  word-break: break-word;
}

// All tables are fixed, except for table of "datatables.js"
table {
  table-layout: fixed;
}

#alert-container {
  margin-bottom: 20px;
}

#main-nav {
  margin-bottom: 0;
}

#project-archive-btn {
  margin-left: 15px;
}

#projects-toolbar {
  margin: 15px 0;
}

#projects-toolbar .form-group {
  width: 100%;
}

.form-inline {
  .form-group .dropdown {
    display: inline-block;
  }
}

#fluid-content {
  padding-left: 15px;
  padding-right: 15px;
  padding-top: 80px;
}

.spacer {
  margin-left: 0.5em;
  margin-right: 0.5em;
}

#content-wrapper {
  margin-top: 50px;

  &.alert-shown {
    margin-top: 102px;
  }
}

.center-block-narrow {
  max-width: 400px;
}

#notifications-dropdown {
  .fa-bell {
    font-size: 15px;
  }

  #count-notifications {
    background-color: $color-theme-primary;
    border-radius: 5px;
    color: $color-wild-sand;
    font-size: 12px;
    font-weight: bold;
    margin-left: 10px;
    margin-top: -10px;
    padding-left: 4px;
    padding-right: 4px;
    position: fixed;
    z-index: 999999;
    display: none;
  }
}

@media(max-width:768px) {
  #count-notifications {
    position: absolute !important;
    margin-left: -4px !important;
    margin-top: 10px !important;
  }
}

.dropdown-notifications {
  max-height: 500px;
  min-width: 450px;
  overflow-x: hidden;
  overflow-y: scroll;
  padding-bottom: 0;
  padding-top: 0;

  .notification {
    border-bottom: 1px solid $color-alto;
    padding-bottom: 10px;
    padding-top: 10px;

    &:hover {
      background-color: $color-concrete;
    }
  }

  .unseen {
    border-left: 4px solid $color-theme-primary;
  }

  .text-center {
    margin-left: 10px;
    padding-top: 10px;
  }

  .assignment {
    background-color: $color-theme-primary;
    border-radius: 50%;
    color: $color-wild-sand;
    font-size: 15px;
    padding: 7px;
  }

  .system_message {
    background-color: $color-theme-secondary;
    border-radius: 50%;
    color: $color-wild-sand;
    font-size: 13px;
    padding: 7px 10px;
  }

  .notifications-dropdown-header {
    background-color: $color-theme-primary;
    color: $color-wild-sand;
    font-weight: bold;
    padding: 8px;
  }

  .notifications-dropdown-footer {
    background-color: $color-mystic;
    padding: 8px;
    text-align: center;
  }

}

#search-menu {
  padding-right: 0;

  .nav {
    position: relative;
    z-index: 1000;
  }
}

#search-content {
 padding-left: 0;
}

#search-container {
  padding-left: 45px;
}

.well-search-checklist {
  background-color: $color-concrete !important;
  margin-bottom: 5px;
}

.blockquote-search {
  font-size: 14px;
  margin-bottom: 10px;
}

.vertical-spacer-one-half {
  display: inline-block;
  width: 1.5em;
}

// Global invisible setter (hide element, but keep its size)
.invisible {
  visibility: hidden !important;
}

/** Skin **/


@import url(https://fonts.googleapis.com/css?family=Open+Sans:400,600,700,400italic&subset=latin,latin-ext);

body {
  background-color: $color-concrete;
  color: $color-emperor;
  font-family: "Open Sans",Arial,Helvetica,sans-serif;
  font-size: 13px;
}

a {
  color: $color-theme-primary;
}

.jumbotron {
  background-color: inherit;
}

.alert {
  border-radius: 0;
  margin-bottom: 0;
  opacity: 1;
  width: 100%;

  &.alert-hidden {
    display: none;
  }

  a#hide-alert {
    margin-left: 15px;
  }

  &.alert-floating {
    position: fixed;
    top: 50px;
    z-index: 1000;
  }
}

.badge {
  background-color: $color-theme-primary;
  font-size: 11px;
  border-radius: 5px;
}

.badge-indicator,
.btn .badge-indicator {
  margin-left: -8px;
  top: 3px;
}

.handle-move {
  cursor: move;
  cursor: -webkit-grabbing;
}

.bg-primary {
  background-color: $color-theme-primary;
}

/* this rule is strict because the order of css files is not correct */
.bootstrap-select:not([class*="col-"]):not([class*="form-control"]):not(.input-group-btn) {
  width: 100% !important;
}

.btn {
  border-radius: 1.5em;
}

.btn-primary {
  background-color: $color-theme-secondary;
  border-color: darken($color-theme-secondary, 5%);

  &.active,
  &.focus,
  &.active.focus {
    background-color: darken($color-theme-secondary, 20%);
    border-color: darken($color-theme-secondary, 25%);

    &:hover {
      background-color: darken($color-theme-secondary, 25%);
      border-color: darken($color-theme-secondary, 30%);
    }
  }

  &:active,
  &:focus,
  &:active:focus,
  &:active:hover,
  &:focus:hover,
  &:active:focus:hover {
    background-color: darken($color-theme-secondary, 20%);
    border-color: darken($color-theme-secondary, 25%);
  }

  &:hover {
    background-color: darken($color-theme-secondary, 5%);
    border-color: darken($color-theme-secondary, 10%);
  }
}

.btn-open-file {
  position: relative;
  overflow: hidden;

  & > input[type=file] {
    position: absolute;
    top: 0;
    right: 0;
    min-width: 100%;
    min-height: 100%;
    font-size: 100px;
    text-align: right;
    filter: alpha(opacity=0);
    opacity: 0;
    outline: none;
    background: white;
    cursor: inherit;
    display: block;
  }
}

mark,.mark {
  background-color: $color-candlelight;
}

.label-default {
  background-color: $color-alto;
}

.label-primary {
  background-color: $color-theme-primary;
}

.circle {
  @extend .badge;
  background-color: $color-theme-primary;
  border-radius: 1em;

  &.disabled {
    background-color: $color-silver-chalice;
  }
}

.navbar {
  border-radius: 0;
}

.navbar-default {
  background-color: $color-white;
  border-color: $color-alto;
}

.navbar-default .navbar-brand {
  background-color: $color-theme-primary;
  font-size: 23px;

  & > img {
    margin-top: -4px;
    max-width: 132px;
    max-height: 26px;

    &.with-version {
      margin-top: -10px;
    }
  }

  & > span.version {
    font-size: 0.6em;
    color: $color-white;
    float: right;
  }

  &:hover,
  &:focus,
  &:focus:active,
  &:focus:visited {
    background-color: $color-theme-primary;
  }
}

a[data-toggle="tooltip"] {
  color: inherit;
  border-bottom: 1px dashed $color-emperor;

  &:hover {
    text-decoration: none;
    cursor: help;
  }
}

.nav-tabs {
  margin-bottom: 15px;

  & > li.has-error {
    & > a {
      color: $color-apple-blossom;

      &:hover {
        color: $color-mojo;
      }
    }
  }
}

.nav-tabs-less {
  margin-bottom: 0;
}

.nav-pills {
  & > li {
    a {
      color: $color-theme-primary;
    }

    &:not(.active):hover a {
      background-color: $color-alto;
    }

    &.active a {
      color: $color-white;
      background-color: $color-theme-primary;
    }
  }
}

.breadcrumb {
  background-color: transparent;
  padding: 15px;
  margin-bottom: 0;
  text-overflow: ellipsis;
  overflow: hidden;
}

.nav-tabs-less > li.active > a {
  &,&:hover,&:focus {
    color: $color-theme-secondary;
    background-color: transparent;
    border-color: transparent;
  }
}

.tag.label.label-info {
  font-size: 100%;
  background-color: $color-theme-primary;
}

#secondary-navigation {
  white-space: nowrap;
  overflow: hidden
}

.navbar-secondary {
  background: $color-concrete !important;
  margin-left: -280px;
  padding-left: 295px;
  padding-right: 15px;
  margin-bottom: 0;
  border-color: transparent;
  z-index: 500;
  position: fixed;
  width: 100%;

  .container-fluid {
    border-left: 0;
    border-top: 0;
    border-right: 0;
    border-bottom: 4px solid $color-silver;
    padding-right: 0;
  }

  ul.nav {
    margin-right: 0;

    & > li {
      text-transform: uppercase;

      & > a {
        color: $color-gray;

        span {
          //width: 14px;
        }
      }
      &.active {
        @include box-shadow(0 4px 0 $color-theme-primary);

        &> a {
          font-weight: bold;
          color: $color-emperor;
        }
      }
    }
  }
}

.navbar-secondary {
  -webkit-transition: all 0.5s ease;
  -moz-transition: all 0.5s ease;
  -o-transition: all 0.5s ease;
  transition: all 0.5s ease;
}

.navbar-without-sidebar{
  padding-left: 15px;
  margin-left: 0px;
  -webkit-transition: all 0.5s ease;
  -moz-transition: all 0.5s ease;
  -o-transition: all 0.5s ease;
  transition: all 0.5s ease;
}

/** Chat bubble */
.chat-bubble {
  background-color: $color-white;
  border-radius: 1em;
  padding: 10px;
}

/** Search */
.nav-search {
  li.disabled {
    opacity: 0.8;

    .badge {
      background-color: $color-emperor;
      opacity: 0.8;
    }
  }
}

/** Settings */
.nav-settings {
  margin-top: 15px;
  margin-bottom: 0;
}

.tab-pane-settings {
  background-color: $color-white;
  padding: 15px;
  border-left: 1px solid $color-alto;
  border-right: 1px solid $color-alto;
  border-bottom: 1px solid $color-alto;
  margin-bottom: 50px;
}

.breadcrumb-organizations {
  background-color: $color-concrete;
  margin-bottom: 15px;
}

.notification-settings-labels {
  line-height: 3em;
  margin-top: 40px;
}

.notification-settings-container {
  margin-top: 50px;
  margin-bottom: 50px;

  .col-xs-2 {
    padding-top: 20px;
  }

  .col-xs-3 {
    padding-top: 30px;
  }

  .btn-group {
    margin-top: 15px;
  }

  .assignment {
    background-color: $color-theme-primary;
    border-radius: 50%;
    color: $color-wild-sand;
    font-size: 15px;
    margin-left: 20px;
    margin-right: 15px;
    padding: 7px;
  }

  .img-circle {
    margin-left: 20px;
    margin-right: 15px;
  }
}

// Help link
#help-link {
  padding: 13px;

  .glyphicon.glyphicon-info-sign {
    font-size: 16px;
    margin-top: 4px;
  }
}

/** Add users modal  */
.btn-group-existing-users {
  width: 100%;

  label.btn {
    text-align: center;

    &.btn-title {
      color: $color-white;
      cursor: inherit;
      background-color: $color-theme-primary;

      &:focus, &:active, &:hover {
        box-shadow: none;
        background-color: $color-theme-primary;
        border-color: #adadad;
      }
    }
  }
}
.existing-users-smalltext {
  width: 100%;
  text-align: center;
}

/** Users datatable */
.panel-organization-users .panel-body {
  padding-bottom: 0;
}

.users-datatable {
  margin-bottom: 20px;

  #users-table_filter {
    float: right;
    margin-top: 19px;
  }

  #users-table_paginate {
    float: right;
  }

  .dropdown-organizations-user {
    .dropdown-menu li.user-organization-role {
      & > :first-child {
        padding-left: 10px;
      }

      &:not(.disabled) span.glyphicon {
        color: transparent !important;
      }
    }
  }
}

/** Protocols management */
.breadcrumb-protocols-manager {
  overflow: visible;
  margin-top: 15px;
  margin-bottom: 15px;
  background-color: $color-white;
}

.tab-pane-protocols {
  & > div.protocols-description {
    margin-bottom: 15px;
  }

  & > .btn-group {
    margin-right: 30px;
  }
}
@media(max-width:768px) {
  .tab-pane-protocols > .btn-group {
    margin-right: 5px;
  }
}

@media(max-width:768px) {
  .navbar-secondary ul.breadcrumb {
    margin-left: 15px;
  }
}

.protocols-datatable table {
  tbody tr.selected {
    & > td:nth-child(3), td:nth-child(4) {
      color: $color-emperor;
      & a {
        color: $color-emperor;
      }
    }
  }
}

.well-protocols-results {
  margin-top: 15px;
  margin-bottom: 0;
  background-color: $color-concrete !important;

  & > ul {
    list-style: none;
    padding-left: 0;
    margin-bottom: 0;

    & > li {
      margin: 2px 0;
    }
  }
}

.linked-children-datatable {
  clear: right;

  table thead {
    display: none;
  }

  table tbody tr .breadcrumb {
    padding: 0 5px;

    & li + li::before {
      content: "> ";
    }
  }

  .dataTables_paginate {
    float: right;
  }
}

a.edit-name-link small {
    margin-left: 5px;
    display: none;
}
a.edit-name-link:hover small {
    display: initial;
}

#edit-protocol-metadata-modal {
  & div.bootstrap-tagsinput {
    width: 100%;
    min-height: 64px;
  }
}

ul.no-style {
  list-style: none;
  margin: 0;
  padding: 0;
}

ul.double-line > li {
  margin-bottom: 1em;
}

.page-header {
  border-color: $color-alto;
}

.pagination > .active > a,
.pagination > .active > a:hover,
.pagination > .active > a:focus,
.pagination > .active > span,
.pagination > .active > span:hover,
.pagination > .active > span:focus {
  background-color: $color-theme-primary;
}

.pagination > li > a,
.pagination > li > span {
  color: $color-theme-primary;
}

.panel-default > .panel-heading {
  background-color: $color-mystic;

  &>.panel-title {
    overflow: hidden;
    text-overflow: ellipsis;
    white-space: nowrap;
  }
}

.panel-project {
  .panel-heading {
    background-color: $color-theme-primary;
    color: $color-white;
  }
}

.panel-archive {
  .panel-heading {
    background-color: darken($color-mystic, 5%);
    color: lighten($color-mine-shaft, 15%);
  }
}

.panel-options {
  position: relative;
  bottom: 6px;
}

.panel-footer {
  padding: 0 15px;
}

.panel-footer-scinote {
  background: linear-gradient(to bottom, $color-concrete, $color-white 10px);
  padding: 0;

  hr {
    margin-top: 10px;
    margin-bottom: 10px;
  }

  .btn-link {
    color: $color-silver-chalice;
  }

  .btn-link:hover {
    color: darken($color-silver-chalice, 15%);
  }

  .tab-content {
    ul {
      margin-bottom: 15px;
    }

    li {
      padding-left: 15px;
      padding-right: 15px;
    }

    .manage-users-link {
      padding-left: 15px;
    }
  }

  .content-module-info {
    max-height: 250px;
    overflow: auto;
  }

  .content-comments {
    max-height: 250px;
    overflow: auto;
  }

  .content-activities {
    max-height: 250px;
    overflow: auto;
  }

  .content-users {
    max-height: 250px;
    overflow: auto;
  }

  .content-notifications {
    max-height: 250px;
    overflow: auto;

    li.notification.alert-red > .date-time {
      font-weight: bold;
      color: $color-milano-red;
    }
    li.notification.alert-yellow > .date-time {
      font-weight: bold;
      color: $color-candlelight;
    }
  }
}

/* Accordion panel */
.panel-accordion {
  border: 0;
  border-radius: 0;
  margin-bottom: 0;

  &> .panel-heading {
    background-color: $color-mystic;
    border-bottom: 1px solid $color-alto;

    .panel-title > a {
      &:hover, &:focus {
        text-decoration: none;
      }

      & > span {
        @include rotate(90deg);
      }
    }
  }
  & .panel-body {
    background-color: $color-white;
    padding: 0;
  }
}

.form-control.bootstrap-select {
  background-color: inherit;
  @include box-shadow(inherit);
}

.panel-heading .dropdown {
  bottom: 8px;
  left: 8px;
}

#activity-modal {
  .modal-body {
    background-color: $color-concrete;
    color: $color-mine-shaft;
  }
}

/** Activity list resembling Bootstrap wells */
ul.content-activities {

  li.activity-item {
    border-radius: .25em;
    background-color: $color-white;
    border: 1px solid $color-concrete;

    .activity-item-date {
      min-width: 150px;
      display: table-cell;
      vertical-align: middle;
      border-top-left-radius: .25em;
      border-bottom-left-radius: .25em;
      border: 3px solid $color-alto;
      background-color: $color-alto;
      padding-left: 10px;
      padding-right: 10px;
      vertical-align: top;
    }
    .activity-item-text {
      display: table-cell;
      padding: 3px 10px;
      text-align: justify;
    }
  }
  li.activity-date-item {
    font-size: 1.4em;

    & > span {
      padding-left: 2em;
      padding-right: 2em;
    }
  }
}

ul.content-module-activities {

  li.activity-item {
    margin-bottom: 15px;

    .activity-item-date {
      font-size: 1.2em;
      background-color: $color-theme-primary;
      border-color: $color-theme-primary;
      color: $color-white;
      padding-top: 5px;
      padding-bottom: 5px;
    }
    .activity-item-text {
      padding-top: 5px;
      padding-bottom: 5px;
    }
  }

}

.step {
  .panel-heading a[data-toggle] {
    color: inherit;
  }

  &.not-completed {
    .badge-num > span.badge {
      background-color: $color-silver;
    }
  }

}

.well {
  background-color: $color-white;
}

.well-sm {
  border-radius: 0;
}

.panel-protocol-status {
  display: inline-block;
  margin-bottom: 5px;

  & > .panel-body {
    padding: 5px 5px 5px 15px;
  }
}

.load-from-repository-protocols-datatable {
  clear: right;

  & .dataTables_wrapper .dataTables_filter {
    float: right;
    margin-top: 15px;
  }
}

/* Import protocol/s modal */
#import-protocol-modal .modal-dialog {
  width: 70%;
}

.import-protocols-modal-preview-container {
  height: 300px;
  overflow-y: scroll;
  width: 100%;

  .eln-table {
    text-align: center;
    height: 21px;
  }

  .badge-preview {
    background-color:#c5c5c5;
    border-radius: 2em;
    float: left;
    font-size: 20px;
    padding: 5px 14px;
    position: relative;
    top: -10px;
  }
}

/* Steps and Results */
#steps {
  background-image: url("data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAACgAAAABCAYAAACsXeyTAAAAIUlEQVQImWNgoD5gZGBgMILSjKRo/P//vwiSGQwMDAwMAEnaA0jgHoquAAAAAElFTkSuQmCC");
  background-repeat: repeat-y;
  background-position: -3px 0;
}

.badge-icon {
  font-size: 1.4em;
  float: left;
  padding: 6px 10px;

  & + .well-sm {
    margin-left: 38px;
  }
}

.step,
.result {
  .panel {
    margin-left: 38px;
  }

  .row {
    padding: 0 20px;
  }

  .badge-num {
    position: absolute;

    & > .badge {
      border-radius: 2em;
      float: left;
      font-size: 23.4px;
      padding: 6px 11px;
      position: relative;
      top: 2px;
    }

    .size-digit-2 {
      font-size: 18px;
      padding: 8px;
    }

    .size-digit-3 {
      font-size: 14px;
      padding: 10px 6px;
    }

    & > .badge.icon {
      font-size: 16.5px;
      padding: 9px;
    }
  }

  .panel-heading a[data-toggle] {
    color: inherit;
  }

  .content-comments {
    max-height: 250px;
    overflow: auto;
    padding: 0 15px;
  }
}

.hot-table {
  margin-bottom: 25px;
}

.step-result-hot-table {
  max-height: 400px;
  overflow: hidden;
  width: 100%;
}

.btn-greyed {
  background-color: $color-silver-chalice;
  border-color: $color-silver-chalice;
  color: $color-white;

  &:hover,
  &:focus {
    background-color: darken($color-silver-chalice, 15%);
    border-color: darken($color-silver-chalice, 15%);
    color: $color-white;
  }
}
/* Data table */

table.dataTable {
  background-color: $color-alabaster;
  table-layout: initial;
  text-overflow: initial;
  width: 100%;
  word-break: initial;

  thead {
    background-color: $color-gray;
  }

  thead > tr > th {
    border-bottom-width: 0;
    border-left: 2px solid $color-alabaster;
    color: $color-white;
    font-weight: normal;
  }

  thead > tr > th:first-child {
    border-left: none;
  }

  thead > tr > th,
  thead > tr > td {
    padding: 6px;
  }

  tbody > tr.selected,
  tbody > tr > .selected {
    background-color: $color-alto !important;
    color: $color-emperor !important;
  }

  .sorting_desc,
  .sorting_asc {
    background-color: $color-theme-primary;
  }
}

/* Helpers */
.line-wrap {
  overflow: hidden;
  text-overflow: ellipsis;
  white-space: nowrap;
  max-width: 100%;

  &.short {
    position: relative;
    top: 6px;
    max-width: 78%;
  }
}

/* Sample group color picker */
.btn-group-sample-group-color {
  .btn-group > .btn {
    border-radius: 0 !important;
  }
}

#samples_length {
  display: inline-block;
}

.toolbarButtons {
  display: inline-block;
  padding-left: 20px;
}

/* Pills with arrow */

.nav-stacked-arrow > li > a {
    border-radius: 2px;
}
.nav-stacked-arrow > li.active > a:after,
.nav-stacked-arrow > li.active > a:hover:after,
.nav-stacked-arrow > li.active > a:focus:after {
    content: '';
    position: absolute;
    left: 100%;
    top: 50%;
    margin-top: -19px;
    border-top: 19px solid transparent;
    border-left: 13px solid #37A0D9;
    border-bottom: 19px solid transparent;
}

.nav-stacked-arrow > li.active > a:hover:after {
  border-left: 13px solid #337ab7;
}

/* Overlay to disable interaction while loading ajax */
.loading-overlay {
  position: fixed;
  top: 0;
  left: 0;
  right: 0;
  bottom: 0;
  z-index: 1000000000;
  cursor: wait;
}

.loading-overlay-center {
  position: fixed;
  left:50%;
  top:50%;
  z-index: 1000000000;
}

html.turbolinks-progress-bar::before {
  background-color: $color-mojo !important;
}

/* Loading animation for ajax events, inspired by Codrops */
#loading-animation {
  position: fixed;
  top: 0;
  left: 0;
  z-index: -1;
  width: 100%;
  height: 3px;
  background: $color-mojo;
  -webkit-transform: translate3d(-100%, 0, 0);
  transform: translate3d(-100%, 0, 0);
  pointer-events: none;
}

#loading-animation.animate {
  z-index: 10000000;
  opacity: 0;
  -webkit-transition: -webkit-transform 5s ease-in, opacity 1s 5s;
  transition: transform 5s ease-in, opacity 1s 5s;
  -webkit-transform: translate3d(0%, 0, 0);
  transform: translate3d(0%, 0, 0);
}

/* Custom settings for intro-js */
.introjs-tooltip {
  opacity: 1 !important;
}

.custom .introjs-button {
  font-weight: bold;
  text-transform: uppercase;
}

.custom .introjs-prevbutton {
  display: none;
}

.custom .introjs-disabled {
  display: none;
}

.custom .introjs-skipbutton {
  border-radius: 0;
  color: $color-theme-primary;
  background-color: $color-white;
  background-image: none;
  border: none;
}

.disabled-next .introjs-nextbutton {
  display: none;
}

.introjs-tooltipReferenceLayer {
  z-index: 999999 !important;

  &.max {
    z-index: 99999999 !important;
  }
}

.modal-tooltip {
  cursor: help;
  position: relative;
  display: inline-block;
  border-bottom: 1px dotted $color-alto;
}

.modal-tooltip .modal-tooltiptext {
  visibility: hidden;
  display: block;
  width: auto;
  background-color: $color-alto;
  color: $color-mine-shaft;
  text-align: center;
  padding: 5px;
  border-radius: 6px;
  position: absolute;
  z-index: 999999;
}

.modal-tooltip:hover .modal-tooltiptext {
  visibility: visible;
}

.asset-loading-spinner {
  width: 20px;
  height: 20px;
  display: inline-block;
  margin-right: 5px;
}


// Comments

.comment-more {
  margin-left: 15px;
}

.dropdown.dropdown-comment {
  display: inline-block;

  [data-role="comment-options"] {
    color: $color-emperor;
  }
}

.dropdown-menu.dropdown-menu-fixed {
  left: auto;
  position: fixed;
  top: auto;

  li:not(.dropdown-header):hover {
    background-color: $color-wild-sand;
  }
}

.edit-comment-form {
  .help-block {
    display: inline;
  }
}