class MyModulesController < ApplicationController include SampleActions include OrganizationsHelper before_action :load_vars, only: [ :show, :edit, :update, :destroy, :description, :due_date, :protocols, :results, :samples, :activities, :activities_tab, :assign_samples, :unassign_samples, :delete_samples, :samples_index, :archive] before_action :load_markdown, only: [ :results ] before_action :load_vars_nested, only: [:new, :create] before_action :check_edit_permissions, only: [ :edit, :update, :description, :due_date ] before_action :check_destroy_permissions, only: [:destroy] before_action :check_view_info_permissions, only: [:show] before_action :check_view_activities_permissions, only: [:activities, :activities_tab] before_action :check_view_protocols_permissions, only: [:protocols] before_action :check_view_results_permissions, only: [:results] before_action :check_view_samples_permissions, only: [:samples, :samples_index] before_action :check_view_archive_permissions, only: [:archive] before_action :check_assign_samples_permissions, only: [:assign_samples] before_action :check_unassign_samples_permissions, only: [:unassign_samples] layout "fluid" # Define submit actions constants (used in routing) ASSIGN_SAMPLES = 'Assign' UNASSIGN_SAMPLES = 'Unassign' # Action defined in SampleActions DELETE_SAMPLES = 'Delete' def show respond_to do |format| format.html format.json { render :json => { :html => render_to_string({ :partial => "show.html.erb" }) } } end end # Description modal window in full-zoom canvas def description respond_to do |format| format.html format.json { render json: { html: render_to_string({ partial: "description.html.erb" }), title: t("my_modules.description.title", module: @my_module.name) } } end end def activities @last_activity_id = params[:from].to_i || 0 @per_page = 10 @activities = @my_module.last_activities(@last_activity_id, @per_page +1 ) @more_activities_url = "" @overflown = @activities.length > @per_page @activities = @my_module.last_activities(@last_activity_id, @per_page) if @activities.count > 0 @more_activities_url = url_for( controller: 'my_modules', action: 'activities', format: :json, from: @activities.last.id) end respond_to do |format| format.html format.json { # 'activites' partial includes header and form for adding older # activities. 'list' partial is used for showing more activities. partial = "activities.html.erb" if @activities.last.id > 0 partial = "my_modules/activities/list_activities.html.erb" end render :json => { :per_page => @per_page, :results_number => @activities.length, :more_url => @more_activities_url, :html => render_to_string({ :partial => partial }) } } end end # Different controller for showing activities inside tab def activities_tab @activities = @my_module.last_activities(1, @per_page) respond_to do |format| format.html format.json { render :json => { :html => render_to_string({ :partial => "activities.html.erb" }) } } end end # Due date modal window in full-zoom canvas def due_date respond_to do |format| format.html format.json { render json: { html: render_to_string({ partial: "due_date.html.erb" }), title: t("my_modules.due_date.title", module: @my_module.name) } } end end def edit session[:return_to] ||= request.referer end def update @my_module.assign_attributes(my_module_params) @my_module.last_modified_by = current_user description_changed = @my_module.description_changed? if @my_module.archived_changed?(from: false, to: true) saved = @my_module.archive(current_user) if saved # Currently not in use Activity.create( type_of: :archive_module, project: @my_module.experiment.project, my_module: @my_module, user: current_user, message: t( 'activities.archive_module', user: current_user.full_name, module: @my_module.name ) ) end elsif @my_module.archived_changed?(from: true, to: false) saved = @my_module.restore(current_user) if saved Activity.create( type_of: :restore_module, project: @my_module.experiment.project, my_module: @my_module, user: current_user, message: t( 'activities.restore_module', user: current_user.full_name, module: @my_module.name ) ) end else saved = @my_module.save if saved and description_changed then Activity.create( type_of: :change_module_description, project: @my_module.experiment.project, my_module: @my_module, user: current_user, message: t( "activities.change_module_description", user: current_user.full_name, module: @my_module.name ) ) end end respond_to do |format| if saved format.html { flash[:success] = t("my_modules.update.success_flash", module: @my_module.name) redirect_to(:back) } format.json { alerts = [] alerts << "alert-red" if @my_module.is_overdue? alerts << "alert-yellow" if @my_module.is_one_day_prior? render json: { status: :ok, due_date_label: render_to_string( partial: "my_modules/due_date_label.html.erb", locals: { my_module: @my_module } ), module_header_due_date_label: render_to_string( partial: "my_modules/module_header_due_date_label.html.erb", locals: { my_module: @my_module } ), description_label: render_to_string( partial: "my_modules/description_label.html.erb", locals: { my_module: @my_module } ), alerts: alerts } } else format.html { render :edit } format.json { render json: @my_module.errors, status: :unprocessable_entity } end end end def protocols @protocol = @my_module.protocol current_organization_switch(@protocol.organization) end def results current_organization_switch(@my_module .experiment .project .organization) end def samples @samples_index_link = samples_index_my_module_path(@my_module, format: :json) @organization = @my_module.experiment.project.organization end def archive @archived_results = @my_module.archived_results current_organization_switch(@my_module .experiment .project .organization) end # Submit actions def assign_samples if params[:sample_ids].present? samples = [] params[:sample_ids].each do |id| sample = Sample.find_by_id(id) sample.last_modified_by = current_user sample.save if sample samples << sample end end @my_module.get_downstream_modules.each do |my_module| new_samples = samples.select { |el| my_module.samples.exclude?(el) } my_module.samples.push(*new_samples) end end redirect_to samples_my_module_path(@my_module) end def unassign_samples if params[:sample_ids].present? samples = [] params[:sample_ids].each do |id| sample = Sample.find_by_id(id) sample.last_modified_by = current_user sample.save if sample samples << sample end end @my_module.get_downstream_modules.each do |my_module| my_module.samples.destroy(samples & my_module.samples) end end redirect_to samples_my_module_path(@my_module) end # AJAX actions def samples_index @organization = @my_module.experiment.project.organization respond_to do |format| format.html format.json { render json: ::SampleDatatable.new(view_context, @organization, nil, @my_module) } end end private def load_vars @direct_upload = ENV['PAPERCLIP_DIRECT_UPLOAD'] == "true" @my_module = MyModule.find_by_id(params[:id]) if @my_module @experiment = @my_module.experiment @project = @my_module.experiment.project if @experiment else render_404 end end # Initialize markdown parser def load_markdown @markdown = Redcarpet::Markdown.new( Redcarpet::Render::HTML.new( filter_html: true, no_images: true ) ) end def check_edit_permissions unless can_edit_module(@my_module) render_403 end end def check_destroy_permissions unless can_archive_module(@my_module) render_403 end end def check_view_info_permissions unless can_view_module_info(@my_module) render_403 end end def check_view_activities_permissions unless can_view_module_activities(@my_module) render_403 end end def check_view_protocols_permissions unless can_view_module_protocols(@my_module) render_403 end end def check_view_results_permissions unless can_view_results_in_module(@my_module) render_403 end end def check_view_samples_permissions unless can_view_module_samples(@my_module) render_403 end end def check_view_archive_permissions unless can_view_module_archive(@my_module) render_403 end end def check_assign_samples_permissions unless can_add_samples_to_module(@my_module) render_403 end end def check_unassign_samples_permissions unless can_delete_samples_from_module(@my_module) render_403 end end def my_module_params params.require(:my_module).permit(:name, :description, :due_date, :archived) end end