mirror of
https://github.com/scinote-eln/scinote-web.git
synced 2024-09-20 14:45:56 +08:00
631 lines
22 KiB
Ruby
631 lines
22 KiB
Ruby
# frozen_string_literal: true
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class ExperimentsController < ApplicationController
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include TeamsHelper
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include InputSanitizeHelper
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include ActionView::Helpers::TextHelper
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include ApplicationHelper
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include Rails.application.routes.url_helpers
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include Breadcrumbs
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before_action :load_project, only: %i(index create archive_group restore_group move)
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before_action :load_experiment, except: %i(create archive_group restore_group
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inventory_assigning_experiment_filter actions_toolbar index move)
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before_action :load_experiments, only: :move
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before_action :check_read_permissions, except: %i(index edit archive clone move new
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create archive_group restore_group
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inventory_assigning_experiment_filter actions_toolbar)
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before_action :check_canvas_read_permissions, only: %i(canvas)
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before_action :check_create_permissions, only: %i(create move)
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before_action :check_manage_permissions, only: :batch_clone_my_modules
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before_action :check_update_permissions, only: :update
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before_action :check_archive_permissions, only: :archive
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before_action :check_clone_permissions, only: %i(clone_modal clone)
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before_action :set_inline_name_editing, only: %i(index canvas module_archive)
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before_action :set_breadcrumbs_items, only: %i(index canvas module_archive)
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before_action :set_navigator, only: %i(index canvas module_archive)
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layout 'fluid'
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def index
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respond_to do |format|
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format.json do
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experiments = Lists::ExperimentsService.new(@project.experiments,
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params.merge(project: @project),
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user: current_user).call
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render json: experiments, each_serializer: Lists::ExperimentSerializer, user: current_user,
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meta: pagination_dict(experiments)
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end
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format.html do
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render 'experiments/index'
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end
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end
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end
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def assigned_users
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render json: User.where(id: @experiment.user_assignments.select(:user_id)),
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each_serializer: UserSerializer,
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user: current_user
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end
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def create
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@experiment = Experiment.new(experiment_params)
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@experiment.created_by = current_user
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@experiment.last_modified_by = current_user
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@experiment.project = @project
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if @experiment.save
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experiment_annotation_notification
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log_activity(:create_experiment, @experiment)
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flash[:success] = t('.success_flash',
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experiment: @experiment.name)
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render json: { path: my_modules_experiment_url(@experiment) }, status: :ok
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else
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render json: @experiment.errors, status: :unprocessable_entity
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end
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end
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def canvas
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@project = @experiment.project
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@active_modules = unless @experiment.archived_branch?
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@experiment.my_modules.active.order(:name)
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.left_outer_joins(:designated_users, :task_comments)
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.preload(:tags, outputs: :to)
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.preload(:my_module_status, :my_module_group, user_assignments: %i(user user_role))
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.select('COUNT(DISTINCT users.id) as designated_users_count')
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.select('COUNT(DISTINCT comments.id) as task_comments_count')
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.select('my_modules.*').group(:id)
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end
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save_view_type('canvas')
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end
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def my_modules
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view_state = @experiment.current_view_state(current_user)
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view_type = view_state.state['my_modules']['view_type'] || 'canvas'
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redirect_to view_mode_redirect_url(view_type)
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end
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def view_type
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view_state = @experiment.current_view_state(current_user)
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view_state.state['my_modules']['view_type'] = view_type_params
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view_state.save!
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redirect_to view_mode_redirect_url(view_type_params)
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end
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def update
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old_text = @experiment.description
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@experiment.assign_attributes(experiment_params)
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@experiment.last_modified_by = current_user
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name_changed = @experiment.name_changed?
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description_changed = @experiment.description_changed?
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if @experiment.save
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experiment_annotation_notification(old_text) if old_text
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activity_type = if experiment_params[:archived] == 'false'
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:restore_experiment
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elsif name_changed && !description_changed
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:rename_experiment
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else
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:edit_experiment
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end
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log_activity(activity_type, @experiment)
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render json: { message: t('experiments.update.success_flash', experiment: @experiment.name) }, status: :ok
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else
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render json: { errors: @experiment.errors }, status: :unprocessable_entity
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end
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end
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def archive
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@experiment.archive(current_user)
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if @experiment.save
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log_activity(:archive_experiment, @experiment)
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flash[:success] = t('experiments.archive.success_flash',
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experiment: @experiment.name)
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redirect_to project_path(@experiment.project)
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else
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flash[:alert] = t('experiments.archive.error_flash')
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redirect_back(fallback_location: root_path)
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end
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end
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def archive_group
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experiments = @project.experiments.active.where(id: params[:experiment_ids])
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counter = 0
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experiments.each do |experiment|
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next unless can_archive_experiment?(experiment)
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experiment.transaction do
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experiment.archived_on = DateTime.now
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experiment.archive!(current_user)
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log_activity(:archive_experiment, experiment)
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counter += 1
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rescue StandardError => e
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Rails.logger.error e.message
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raise ActiveRecord::Rollback
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end
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end
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if counter.positive?
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render json: { message: t('experiments.archive_group.success_flash', number: counter) }
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else
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render json: { message: t('experiments.archive_group.error_flash') }, status: :unprocessable_entity
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end
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end
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def restore_group
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experiments = @project.experiments.archived.where(id: params[:experiment_ids])
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counter = 0
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experiments.each do |experiment|
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next unless can_restore_experiment?(experiment)
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experiment.transaction do
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experiment.restore!(current_user)
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log_activity(:restore_experiment, experiment)
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counter += 1
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rescue StandardError => e
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Rails.logger.error e.message
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raise ActiveRecord::Rollback
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end
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end
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if counter.positive?
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render json: { message: t('experiments.restore_group.success_flash', number: counter) }
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else
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render json: { message: t('experiments.restore_group.error_flash') }, status: :unprocessable_entity
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end
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end
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def projects_to_clone
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projects = @experiment.project.team.projects.active
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.with_user_permission(current_user, ProjectPermissions::EXPERIMENTS_CREATE)
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.where('trim_html_tags(projects.name) ILIKE ?',
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"%#{ActiveRecord::Base.sanitize_sql_like(params['query'])}%")
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.map { |p| [p.id, p.name] }
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render json: { data: projects }, status: :ok
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end
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def projects_to_move
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projects = @experiment.movable_projects(current_user)
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.where('trim_html_tags(projects.name) ILIKE ?',
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"%#{ActiveRecord::Base.sanitize_sql_like(params['query'])}%")
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.map { |p| [p.id, p.name] }
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render json: { data: projects }, status: :ok
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end
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def experiments_to_move
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experiments = @experiment.project.experiments.active.where.not(id: @experiment)
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.managable_by_user(current_user).order(name: :asc).map { |e| [e.id, e.name] }
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render json: { data: experiments }, status: :ok
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end
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# POST: clone_experiment(id)
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def clone
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@project = current_team.projects.find(move_experiment_param)
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return render_403 unless can_create_project_experiments?(@project)
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service = Experiments::CopyExperimentAsTemplateService.call(experiment: @experiment,
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project: @project,
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user: current_user)
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if service.succeed?
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flash[:success] = t('experiments.clone.success_flash',
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experiment: @experiment.name)
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render json: { url: canvas_experiment_path(service.cloned_experiment) }
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else
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render json: {
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message: t('experiments.clone.error_flash',
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experiment: @experiment.name)
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}, status: :unprocessable_entity
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end
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end
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def search_tags
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tags = @experiment.project.tags.where.not(id: JSON.parse(params[:selected_tags]))
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.where_attributes_like(:name, params[:query])
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.select(:id, :name, :color)
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tags = tags.map do |tag|
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{ value: tag.id, label: escape_input(tag.name), params: { color: escape_input(tag.color) } }
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end
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if params[:query].present? && tags.select { |tag| tag[:label] == params[:query] }.blank?
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tags << { value: 0, label: escape_input(params[:query]), params: { color: nil } }
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end
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render json: tags
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end
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# POST: move_experiments(ids)
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def move
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return render_403 unless @experiments.all? { |e| can_move_experiment?(e) }
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@project.transaction do
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@experiments.each do |experiment|
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service = Experiments::MoveToProjectService
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.call(experiment_id: experiment.id,
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project_id: params[:project_id],
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user_id: current_user.id)
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raise StandardError unless service.succeed?
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end
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flash[:success] = t('experiments.table.move_success_flash', project: escape_input(@project.name))
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render json: { message: t('experiments.table.move_success_flash',
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project: escape_input(@project.name)), path: project_path(@project) }
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rescue StandardError => e
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Rails.logger.error(e.message)
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Rails.logger.error(e.backtrace.join("\n"))
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render json: {
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message: t('experiments.table.move_error_flash', project: escape_input(@project.name))
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}, status: :unprocessable_entity
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raise ActiveRecord::Rollback
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end
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rescue ActiveRecord::RecordNotFound
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render_404
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end
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def move_modules_modal
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@experiments = @experiment.project.experiments.active.where.not(id: @experiment)
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.managable_by_user(current_user).order(name: :asc)
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render json: {
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html: render_to_string(partial: 'move_modules_modal', formats: :html)
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}
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end
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def move_modules
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modules_to_move = {}
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dst_experiment = @experiment.project.experiments.find(params[:to_experiment_id])
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return render_403 unless can_manage_experiment?(dst_experiment)
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@experiment.transaction do
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params[:my_module_ids].each do |id|
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my_module = @experiment.my_modules.find(id)
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return render_403 unless can_move_my_module?(my_module)
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modules_to_move[id] = dst_experiment.id
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end
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# Make sure that locks are acquired always in the same order
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if dst_experiment.id < @experiment.id
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dst_experiment.lock! && @experiment.lock!
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else
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@experiment.lock! && dst_experiment.lock!
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end
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@experiment.move_modules(modules_to_move, current_user)
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@experiment.workflowimg.purge
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render json: { message: t('experiments.table.modal_move_modules.success_flash',
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experiment: escape_input(dst_experiment.name)) }
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rescue StandardError => e
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Rails.logger.error(e.message)
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Rails.logger.error(e.backtrace.join("\n"))
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render json: {
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message: t('experiments.table.modal_move_modules.error_flash', experiment: escape_input(dst_experiment.name))
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}, status: :unprocessable_entity
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raise ActiveRecord::Rollback
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end
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rescue ActiveRecord::RecordNotFound
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render_404
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end
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def module_archive
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@project = @experiment.project
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@my_modules = @experiment.archived_branch? ? @experiment.my_modules : @experiment.my_modules.archived
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@my_modules = @my_modules.with_granted_permissions(current_user, MyModulePermissions::READ_ARCHIVED)
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.left_outer_joins(:designated_users, :task_comments)
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.preload(:tags, outputs: :to)
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.preload(:my_module_status, :my_module_group, user_assignments: %i(user user_role))
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.select('COUNT(DISTINCT users.id) as designated_users_count')
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.select('COUNT(DISTINCT comments.id) as task_comments_count')
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.select('my_modules.*').group(:id)
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end
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def fetch_workflow_img
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unless @experiment.workflowimg_exists?
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Experiment.no_touching do
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Experiments::GenerateWorkflowImageService.call(experiment: @experiment)
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end
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end
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render json: {
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workflowimg_url: rails_blob_path(@experiment.workflowimg, only_path: true),
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}
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end
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def inventory_assigning_experiment_filter
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viewable_experiments = Experiment.viewable_by_user(current_user, current_team)
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assignable_my_modules = MyModule.repository_row_assignable_by_user(current_user)
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project = Project.viewable_by_user(current_user, current_team)
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.joins(experiments: :my_modules)
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.where(experiments: { id: viewable_experiments })
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.where(my_modules: { id: assignable_my_modules })
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.find_by(id: params[:project_id])
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return render_404 if project.blank?
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experiments = project.experiments
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.active
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.joins(:my_modules)
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.where(experiments: { id: viewable_experiments })
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.where(my_modules: { id: assignable_my_modules })
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.order(:name)
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.distinct
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.pluck(:id, :name)
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return render plain: [].to_json if experiments.blank?
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render json: experiments
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end
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def assigned_users_to_tasks
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users = current_team.users.where(id: @experiment.my_modules.joins(:user_my_modules).select(:user_id))
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.search(false, params[:query]).map do |u|
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{ value: u.id, label: escape_input(u.name), params: { avatar_url: avatar_path(u, :icon_small) } }
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end
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render json: users, status: :ok
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end
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def archive_my_modules
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my_modules = @experiment.my_modules.where(id: params[:my_modules])
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counter = 0
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my_modules.each do |my_module|
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next unless can_archive_my_module?(my_module)
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my_module.transaction do
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connect_my_modules_before_archive(my_module)
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my_module.archive!(current_user)
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log_my_module_activity(:archive_module, my_module)
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counter += 1
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rescue StandardError => e
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Rails.logger.error e.message
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raise ActiveRecord::Rollback
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end
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end
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if counter.positive?
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render json: { message: t('experiments.table.archive_group.success_flash', number: counter) }
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else
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render json: { message: t('experiments.table.archive_group.error_flash') }, status: :unprocessable_entity
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end
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end
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def batch_clone_my_modules
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MyModule.transaction do
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@my_modules =
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@experiment.my_modules
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.readable_by_user(current_user)
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.where(id: params[:my_module_ids])
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@my_modules.find_each do |my_module|
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new_my_module = my_module.dup
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new_my_module.my_module_status = MyModuleStatus.first
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new_my_module.update!(
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{
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provisioning_status: :in_progress,
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name: my_module.next_clone_name,
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created_by: current_user,
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due_date: nil,
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started_on: nil,
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state: 'uncompleted',
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completed_on: nil
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}.merge(new_my_module.get_new_position)
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)
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new_my_module.designated_users << current_user
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MyModules::CopyContentJob.perform_later(current_user.id, my_module.id, new_my_module.id)
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end
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@experiment.workflowimg.purge
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end
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render(
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json: {
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provisioning_status_urls: @my_modules.map { |m| provisioning_status_my_module_url(m) }
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}
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)
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end
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def actions_toolbar
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render json: {
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actions:
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Toolbars::ExperimentsService.new(
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current_user,
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experiment_ids: JSON.parse(params[:items]).map { |i| i['id'] }
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).actions
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}
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end
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private
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def load_experiment
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@experiment = Experiment.preload(user_assignments: %i(user user_role)).find_by(id: params[:id])
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render_404 unless @experiment
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end
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def load_experiments
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@experiments = Experiment.preload(user_assignments: %i(user user_role)).where(id: params[:ids])
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render_404 unless @experiments
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end
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def load_project
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@project = Project.find_by(id: params[:project_id])
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render_404 unless @project
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current_team_switch(@project.team) if current_team != @project.team
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render_403 unless can_read_project?(@project)
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end
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def experiment_params
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params.require(:experiment).permit(:name, :description, :archived)
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end
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def move_experiment_param
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params.require(:experiment).require(:project_id)
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end
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def view_type_params
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params.require(:experiment).require(:view_type)
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end
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def save_view_type(view_type)
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view_state = @experiment.current_view_state(current_user)
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view_state.state['my_modules']['view_type'] = view_type
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view_state.save!
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end
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def check_read_permissions
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current_team_switch(@experiment.project.team) if current_team != @experiment.project.team
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render_403 unless can_read_experiment?(@experiment) ||
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(@experiment.archived? && can_read_archived_experiment?(@experiment))
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end
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def check_canvas_read_permissions
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render_403 unless can_read_experiment_canvas?(@experiment)
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end
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def check_create_permissions
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render_403 unless can_create_project_experiments?(@project)
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end
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def check_manage_permissions
|
|
render_403 unless can_manage_experiment?(@experiment)
|
|
end
|
|
|
|
def check_update_permissions
|
|
if experiment_params[:archived] == 'false'
|
|
render_403 unless can_restore_experiment?(@experiment)
|
|
else
|
|
render_403 unless can_manage_experiment?(@experiment)
|
|
end
|
|
end
|
|
|
|
def check_archive_permissions
|
|
render_403 unless can_archive_experiment?(@experiment)
|
|
end
|
|
|
|
def check_clone_permissions
|
|
render_403 unless can_clone_experiment?(@experiment)
|
|
end
|
|
|
|
def set_inline_name_editing
|
|
if @experiment
|
|
return unless can_manage_experiment?(@experiment)
|
|
|
|
@inline_editable_title_config = {
|
|
name: 'title',
|
|
params_group: 'experiment',
|
|
item_id: @experiment.id,
|
|
field_to_udpate: 'name',
|
|
path_to_update: experiment_path(@experiment)
|
|
}
|
|
else
|
|
return unless can_manage_project?(@project)
|
|
|
|
@inline_editable_title_config = {
|
|
name: 'title',
|
|
params_group: 'project',
|
|
item_id: @project.id,
|
|
field_to_udpate: 'name',
|
|
path_to_update: project_path(@project)
|
|
}
|
|
end
|
|
end
|
|
|
|
def experiment_annotation_notification(old_text = nil)
|
|
smart_annotation_notification(
|
|
old_text: old_text,
|
|
new_text: @experiment.description,
|
|
subject: @experiment,
|
|
title: t('notifications.experiment_annotation_title',
|
|
experiment: @experiment.name,
|
|
user: current_user.full_name),
|
|
message: t('notifications.experiment_annotation_message_html',
|
|
project: link_to(@experiment.project.name,
|
|
project_url(@experiment.project)),
|
|
experiment: link_to(@experiment.name,
|
|
my_modules_experiment_url(@experiment)))
|
|
)
|
|
end
|
|
|
|
def log_activity(type_of, experiment)
|
|
Activities::CreateActivityService
|
|
.call(activity_type: type_of,
|
|
owner: current_user,
|
|
team: experiment.team,
|
|
project: experiment.project,
|
|
subject: experiment,
|
|
message_items: { experiment: experiment.id })
|
|
end
|
|
|
|
def log_my_module_activity(type_of, my_module)
|
|
Activities::CreateActivityService
|
|
.call(activity_type: type_of,
|
|
owner: current_user,
|
|
team: my_module.experiment.project.team,
|
|
project: my_module.experiment.project,
|
|
subject: my_module,
|
|
message_items: { my_module: my_module.id })
|
|
end
|
|
|
|
def view_mode_redirect_url(view_type)
|
|
if params[:view_mode] == 'archived'
|
|
case view_type
|
|
when 'canvas'
|
|
module_archive_experiment_path(@experiment)
|
|
else
|
|
my_modules_path(experiment_id: @experiment, view_mode: :archived)
|
|
end
|
|
else
|
|
view_type == 'canvas' ? canvas_experiment_path(@experiment) : my_modules_path(experiment_id: @experiment)
|
|
end
|
|
end
|
|
|
|
def sort_my_modules(records, sort)
|
|
case sort
|
|
when 'due_first'
|
|
records.order(:due_date, :name)
|
|
when 'due_last'
|
|
records.order(Arel.sql("COALESCE(due_date, DATE '2100-01-01') DESC"), :name)
|
|
when 'atoz'
|
|
records.order(:name)
|
|
when 'ztoa'
|
|
records.order(name: :desc)
|
|
when 'archived_old'
|
|
records.order(Arel.sql('COALESCE(my_modules.archived_on, my_modules.archived_on) ASC'))
|
|
when 'archived_new'
|
|
records.order(Arel.sql('COALESCE(my_modules.archived_on, my_modules.archived_on) DESC'))
|
|
else
|
|
records
|
|
end
|
|
end
|
|
|
|
def connect_my_modules_before_archive(my_module)
|
|
return if my_module.my_modules.empty? || my_module.my_module_antecessors.empty?
|
|
|
|
my_module.my_modules.each do |destination_my_module|
|
|
my_module.my_module_antecessors.each do |source_my_module|
|
|
Connection.create!(input_id: destination_my_module.id, output_id: source_my_module.id)
|
|
end
|
|
end
|
|
end
|
|
|
|
def set_navigator
|
|
@navigator = if @experiment
|
|
{
|
|
url: tree_navigator_experiment_path(@experiment),
|
|
archived: (action_name == 'module_archive' || params[:view_mode] == 'archived'),
|
|
id: @experiment.code
|
|
}
|
|
else
|
|
{
|
|
url: tree_navigator_project_path(@project),
|
|
archived: (action_name == 'index' && params[:view_mode] == 'archived'),
|
|
id: @project.code
|
|
}
|
|
end
|
|
end
|
|
end
|