mirror of
https://github.com/scinote-eln/scinote-web.git
synced 2024-11-11 10:06:53 +08:00
701 lines
22 KiB
Ruby
701 lines
22 KiB
Ruby
class MyModulesController < ApplicationController
|
|
include SampleActions
|
|
include TeamsHelper
|
|
include InputSanitizeHelper
|
|
include Rails.application.routes.url_helpers
|
|
include ActionView::Helpers::UrlHelper
|
|
include ApplicationHelper
|
|
|
|
before_action :load_vars,
|
|
only: %i(show update destroy description due_date protocols
|
|
results samples activities activities_tab
|
|
assign_samples unassign_samples delete_samples
|
|
toggle_task_state samples_index archive
|
|
complete_my_module repository repository_index
|
|
assign_repository_records unassign_repository_records
|
|
unassign_repository_records_modal
|
|
assign_repository_records_modal)
|
|
before_action :load_vars_nested, only: %i(new create)
|
|
before_action :load_repository, only: %i(assign_repository_records
|
|
unassign_repository_records
|
|
unassign_repository_records_modal
|
|
assign_repository_records_modal
|
|
repository_index)
|
|
before_action :load_projects_tree, only: %i(protocols results activities
|
|
samples repository archive)
|
|
before_action :check_manage_permissions_archive, only: %i(update destroy)
|
|
before_action :check_manage_permissions, only: %i(description due_date)
|
|
before_action :check_view_permissions, only:
|
|
%i(show activities activities_tab protocols results samples samples_index
|
|
archive)
|
|
before_action :check_complete_module_permission, only: :complete_my_module
|
|
before_action :check_assign_repository_records_permissions,
|
|
only: %i(unassign_repository_records_modal
|
|
assign_repository_records_modal
|
|
assign_repository_records
|
|
unassign_repository_records
|
|
assign_samples
|
|
unassign_samples)
|
|
|
|
layout 'fluid'.freeze
|
|
|
|
# Define submit actions constants (used in routing)
|
|
ASSIGN_SAMPLES = 'Assign'.freeze
|
|
UNASSIGN_SAMPLES = 'Unassign'.freeze
|
|
|
|
# Action defined in SampleActions
|
|
DELETE_SAMPLES = 'Delete'.freeze
|
|
|
|
def show
|
|
respond_to do |format|
|
|
format.json {
|
|
render :json => {
|
|
:html => render_to_string({
|
|
:partial => "show.html.erb"
|
|
})
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
# Description modal window in full-zoom canvas
|
|
def description
|
|
respond_to do |format|
|
|
format.html
|
|
format.json {
|
|
render json: {
|
|
html: render_to_string({
|
|
partial: "description.html.erb"
|
|
}),
|
|
title: t('my_modules.description.title',
|
|
module: escape_input(@my_module.name))
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
def activities
|
|
@last_activity_id = params[:from].to_i || 0
|
|
@per_page = 10
|
|
|
|
@activities = @my_module.last_activities(@last_activity_id, @per_page + 1)
|
|
@more_activities_url = ""
|
|
|
|
@overflown = @activities.length > @per_page
|
|
|
|
@activities = @my_module.last_activities(@last_activity_id, @per_page)
|
|
|
|
if @activities.count > 0
|
|
@more_activities_url =
|
|
activities_my_module_path(@my_module, from: @activities.last.id)
|
|
end
|
|
|
|
respond_to do |format|
|
|
format.json {
|
|
# 'activites' partial includes header and form for adding older
|
|
# activities. 'list' partial is used for showing more activities.
|
|
partial = "activities.html.erb"
|
|
if @activities.last.id > 0
|
|
partial = "my_modules/activities/list_activities.html.erb"
|
|
end
|
|
render :json => {
|
|
:per_page => @per_page,
|
|
:results_number => @activities.length,
|
|
:more_url => @more_activities_url,
|
|
:html => render_to_string({
|
|
:partial => partial
|
|
})
|
|
}
|
|
}
|
|
format.html
|
|
end
|
|
end
|
|
|
|
# Different controller for showing activities inside tab
|
|
def activities_tab
|
|
@activities = @my_module.last_activities(1, @per_page)
|
|
|
|
respond_to do |format|
|
|
format.html
|
|
format.json {
|
|
render :json => {
|
|
:html => render_to_string({
|
|
:partial => "activities.html.erb"
|
|
})
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
# Due date modal window in full-zoom canvas
|
|
def due_date
|
|
respond_to do |format|
|
|
format.html
|
|
format.json {
|
|
render json: {
|
|
html: render_to_string({
|
|
partial: "due_date.html.erb"
|
|
}),
|
|
title: t('my_modules.due_date.title',
|
|
module: escape_input(@my_module.name))
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
def update
|
|
@my_module.assign_attributes(my_module_params)
|
|
@my_module.last_modified_by = current_user
|
|
description_changed = @my_module.description_changed?
|
|
|
|
if @my_module.archived_changed?(from: false, to: true)
|
|
|
|
saved = @my_module.archive(current_user)
|
|
if saved
|
|
# Currently not in use
|
|
Activity.create(
|
|
type_of: :archive_module,
|
|
project: @my_module.experiment.project,
|
|
experiment: @my_module.experiment,
|
|
my_module: @my_module,
|
|
user: current_user,
|
|
message: t(
|
|
'activities.archive_module',
|
|
user: current_user.full_name,
|
|
module: @my_module.name
|
|
)
|
|
)
|
|
end
|
|
elsif @my_module.archived_changed?(from: true, to: false)
|
|
|
|
saved = @my_module.restore(current_user)
|
|
if saved
|
|
restored = true
|
|
Activity.create(
|
|
type_of: :restore_module,
|
|
project: @my_module.experiment.project,
|
|
experiment: @my_module.experiment,
|
|
my_module: @my_module,
|
|
user: current_user,
|
|
message: t(
|
|
'activities.restore_module',
|
|
user: current_user.full_name,
|
|
module: @my_module.name
|
|
)
|
|
)
|
|
end
|
|
else
|
|
|
|
saved = @my_module.save
|
|
if saved and description_changed then
|
|
Activity.create(
|
|
type_of: :change_module_description,
|
|
project: @my_module.experiment.project,
|
|
experiment: @my_module.experiment,
|
|
my_module: @my_module,
|
|
user: current_user,
|
|
message: t(
|
|
"activities.change_module_description",
|
|
user: current_user.full_name,
|
|
module: @my_module.name
|
|
)
|
|
)
|
|
end
|
|
end
|
|
|
|
respond_to do |format|
|
|
if restored
|
|
format.html do
|
|
flash[:success] = t(
|
|
'my_modules.module_archive.restored_flash',
|
|
module: @my_module.name
|
|
)
|
|
redirect_to module_archive_experiment_path(@my_module.experiment)
|
|
end
|
|
elsif saved
|
|
format.json {
|
|
alerts = []
|
|
alerts << 'alert-green' if @my_module.completed?
|
|
unless @my_module.completed?
|
|
alerts << 'alert-red' if @my_module.is_overdue?
|
|
alerts << 'alert-yellow' if @my_module.is_one_day_prior?
|
|
end
|
|
render json: {
|
|
status: :ok,
|
|
due_date_label: render_to_string(
|
|
partial: "my_modules/due_date_label.html.erb",
|
|
locals: { my_module: @my_module }
|
|
),
|
|
module_header_due_date_label: render_to_string(
|
|
partial: "my_modules/module_header_due_date_label.html.erb",
|
|
locals: { my_module: @my_module }
|
|
),
|
|
description_label: render_to_string(
|
|
partial: "my_modules/description_label.html.erb",
|
|
locals: { my_module: @my_module }
|
|
),
|
|
alerts: alerts
|
|
}
|
|
}
|
|
else
|
|
format.json {
|
|
render json: @my_module.errors,
|
|
status: :unprocessable_entity
|
|
}
|
|
end
|
|
end
|
|
end
|
|
|
|
def protocols
|
|
@protocol = @my_module.protocol
|
|
current_team_switch(@protocol.team)
|
|
end
|
|
|
|
def results
|
|
current_team_switch(@my_module
|
|
.experiment
|
|
.project
|
|
.team)
|
|
end
|
|
|
|
def samples
|
|
@samples_index_link = samples_index_my_module_path(@my_module, format: :json)
|
|
@team = @my_module.experiment.project.team
|
|
end
|
|
|
|
def repository
|
|
@repository = Repository.find_by_id(params[:repository_id])
|
|
render_403 if @repository.nil? || !can_read_team?(@repository.team)
|
|
end
|
|
|
|
def archive
|
|
@archived_results = @my_module.archived_results
|
|
current_team_switch(@my_module
|
|
.experiment
|
|
.project
|
|
.team)
|
|
end
|
|
|
|
# Submit actions
|
|
def assign_samples
|
|
if params[:sample_ids].present?
|
|
samples = []
|
|
|
|
params[:sample_ids].each do |id|
|
|
sample = Sample.find_by_id(id)
|
|
sample.last_modified_by = current_user
|
|
sample.save
|
|
|
|
if sample
|
|
samples << sample
|
|
end
|
|
end
|
|
|
|
task_names = []
|
|
new_samples = []
|
|
@my_module.downstream_modules.each do |my_module|
|
|
new_samples = samples.select { |el| my_module.samples.exclude?(el) }
|
|
my_module.samples.push(*new_samples)
|
|
task_names << my_module.name
|
|
end
|
|
if new_samples.any?
|
|
Activity.create(
|
|
type_of: :assign_sample,
|
|
project: @my_module.experiment.project,
|
|
experiment: @my_module.experiment,
|
|
my_module: @my_module,
|
|
user: current_user,
|
|
message: I18n.t(
|
|
'activities.assign_sample',
|
|
user: current_user.full_name,
|
|
tasks: task_names.join(', '),
|
|
samples: new_samples.map(&:name).join(', ')
|
|
)
|
|
)
|
|
end
|
|
end
|
|
redirect_to samples_my_module_path(@my_module)
|
|
end
|
|
|
|
def unassign_samples
|
|
if params[:sample_ids].present?
|
|
samples = []
|
|
|
|
params[:sample_ids].each do |id|
|
|
sample = Sample.find_by_id(id)
|
|
sample.last_modified_by = current_user
|
|
sample.save
|
|
|
|
if sample && @my_module.samples.include?(sample)
|
|
samples << sample
|
|
end
|
|
end
|
|
|
|
task_names = []
|
|
@my_module.downstream_modules.each do |my_module|
|
|
task_names << my_module.name
|
|
my_module.samples.destroy(samples & my_module.samples)
|
|
end
|
|
if samples.any?
|
|
Activity.create(
|
|
type_of: :unassign_sample,
|
|
project: @my_module.experiment.project,
|
|
experiment: @my_module.experiment,
|
|
my_module: @my_module,
|
|
user: current_user,
|
|
message: I18n.t(
|
|
'activities.unassign_sample',
|
|
user: current_user.full_name,
|
|
tasks: task_names.join(', '),
|
|
samples: samples.map(&:name).join(', ')
|
|
)
|
|
)
|
|
end
|
|
end
|
|
redirect_to samples_my_module_path(@my_module)
|
|
end
|
|
|
|
# AJAX actions
|
|
def samples_index
|
|
@team = @my_module.experiment.project.team
|
|
|
|
respond_to do |format|
|
|
format.html
|
|
format.json do
|
|
render json: ::SampleDatatable.new(view_context,
|
|
@team,
|
|
nil,
|
|
@my_module,
|
|
nil,
|
|
current_user)
|
|
end
|
|
end
|
|
end
|
|
|
|
# AJAX actions
|
|
def repository_index
|
|
@draw = params[:draw].to_i
|
|
per_page = params[:length] == '-1' ? 100 : params[:length].to_i
|
|
page = (params[:start].to_i / per_page) + 1
|
|
records = RepositoryDatatableService.new(@repository,
|
|
params,
|
|
current_user,
|
|
@my_module)
|
|
@assigned_rows = records.assigned_rows
|
|
@repository_row_count = records.repository_rows.count
|
|
@columns_mappings = records.mappings
|
|
@repository_rows = records.repository_rows.page(page).per(per_page)
|
|
render 'repository_rows/index.json'
|
|
end
|
|
|
|
# Submit actions
|
|
def assign_repository_records
|
|
if params[:selected_rows].present? && params[:repository_id].present?
|
|
records_names = []
|
|
downstream = ActiveModel::Type::Boolean.new.cast(params[:downstream])
|
|
|
|
RepositoryRow
|
|
.where(id: params[:selected_rows],
|
|
repository_id: params[:repository_id])
|
|
.find_each do |record|
|
|
unless @my_module.repository_rows.include?(record)
|
|
record.last_modified_by = current_user
|
|
record.save
|
|
|
|
MyModuleRepositoryRow.create!(
|
|
my_module: @my_module,
|
|
repository_row: record,
|
|
assigned_by: current_user
|
|
)
|
|
records_names << record.name
|
|
end
|
|
|
|
next unless downstream
|
|
@my_module.downstream_modules.each do |my_module|
|
|
next if my_module.repository_rows.include?(record)
|
|
MyModuleRepositoryRow.create!(
|
|
my_module: my_module,
|
|
repository_row: record,
|
|
assigned_by: current_user
|
|
)
|
|
records_names << record.name
|
|
end
|
|
end
|
|
|
|
if records_names.any?
|
|
records_names.uniq!
|
|
Activity.create(
|
|
type_of: :assign_repository_record,
|
|
project: @project,
|
|
experiment: @experiment,
|
|
my_module: @my_module,
|
|
user: current_user,
|
|
message: I18n.t('activities.assign_repository_records',
|
|
user: current_user.full_name,
|
|
task: @my_module.name,
|
|
repository: @repository.name,
|
|
records: records_names.join(', ')
|
|
)
|
|
)
|
|
flash = I18n.t('repositories.assigned_records_flash',
|
|
records: records_names.join(', '))
|
|
flash = I18n.t('repositories.assigned_records_downstream_flash',
|
|
records: records_names.join(', ')) if downstream
|
|
respond_to do |format|
|
|
format.json { render json: { flash: flash }, status: :ok }
|
|
end
|
|
else
|
|
respond_to do |format|
|
|
format.json do
|
|
render json: {
|
|
flash: t('repositories.no_records_assigned_flash')
|
|
}, status: :bad_request
|
|
end
|
|
end
|
|
end
|
|
end
|
|
end
|
|
|
|
def unassign_repository_records
|
|
if params[:selected_rows].present? && params[:repository_id].present?
|
|
downstream = ActiveModel::Type::Boolean.new.cast(params[:downstream])
|
|
|
|
records = RepositoryRow.assigned_on_my_module(params[:selected_rows],
|
|
@my_module)
|
|
|
|
@my_module.repository_rows.destroy(records & @my_module.repository_rows)
|
|
|
|
if downstream
|
|
@my_module.downstream_modules.each do |my_module|
|
|
assigned_records = RepositoryRow.assigned_on_my_module(
|
|
params[:selected_rows],
|
|
my_module
|
|
)
|
|
my_module.repository_rows.destroy(
|
|
assigned_records & my_module.repository_rows
|
|
)
|
|
assigned_records.update_all(last_modified_by_id: current_user.id)
|
|
end
|
|
end
|
|
|
|
# update last last_modified_by
|
|
records.update_all(last_modified_by_id: current_user.id)
|
|
|
|
if records.any?
|
|
Activity.create(
|
|
type_of: :unassign_repository_record,
|
|
project: @project,
|
|
experiment: @experiment,
|
|
my_module: @my_module,
|
|
user: current_user,
|
|
message: I18n.t(
|
|
'activities.unassign_repository_records',
|
|
user: current_user.full_name,
|
|
task: @my_module.name,
|
|
repository: @repository.name,
|
|
records: records.map(&:name).join(', ')
|
|
)
|
|
)
|
|
flash = I18n.t('repositories.unassigned_records_flash',
|
|
records: records.map(&:name).join(', '))
|
|
respond_to do |format|
|
|
format.json { render json: { flash: flash }, status: :ok }
|
|
end
|
|
else
|
|
respond_to do |format|
|
|
format.json do
|
|
render json: {
|
|
flash: t('repositories.no_records_unassigned_flash')
|
|
}, status: :bad_request
|
|
end
|
|
end
|
|
end
|
|
end
|
|
end
|
|
|
|
def unassign_repository_records_modal
|
|
selected_rows = params[:selected_rows]
|
|
modal = render_to_string(
|
|
partial: 'my_modules/modals/unassign_repository_records_modal.html.erb',
|
|
locals: { my_module: @my_module,
|
|
repository: @repository,
|
|
selected_rows: selected_rows }
|
|
)
|
|
render json: { html: modal }, status: :ok
|
|
end
|
|
|
|
def assign_repository_records_modal
|
|
selected_rows = params[:selected_rows]
|
|
modal = render_to_string(
|
|
partial: 'my_modules/modals/assign_repository_records_modal.html.erb',
|
|
locals: { my_module: @my_module,
|
|
repository: @repository,
|
|
selected_rows: selected_rows }
|
|
)
|
|
render json: { html: modal }, status: :ok
|
|
end
|
|
|
|
# Complete/uncomplete task
|
|
def toggle_task_state
|
|
respond_to do |format|
|
|
if can_complete_module?(@my_module)
|
|
@my_module.completed? ? @my_module.uncomplete : @my_module.complete
|
|
completed = @my_module.completed?
|
|
if @my_module.save
|
|
task_completion_activity
|
|
|
|
# Render new button HTML
|
|
if completed
|
|
new_btn_partial = 'my_modules/state_button_uncomplete.html.erb'
|
|
else
|
|
new_btn_partial = 'my_modules/state_button_complete.html.erb'
|
|
end
|
|
|
|
format.json do
|
|
render json: {
|
|
new_btn: render_to_string(partial: new_btn_partial),
|
|
completed: completed,
|
|
module_header_due_date_label: render_to_string(
|
|
partial: 'my_modules/module_header_due_date_label.html.erb',
|
|
locals: { my_module: @my_module }
|
|
),
|
|
module_state_label: render_to_string(
|
|
partial: 'my_modules/module_state_label.html.erb',
|
|
locals: { my_module: @my_module }
|
|
)
|
|
}
|
|
end
|
|
else
|
|
format.json { render json: {}, status: :unprocessable_entity }
|
|
end
|
|
else
|
|
format.json { render json: {}, status: :unauthorized }
|
|
end
|
|
end
|
|
end
|
|
|
|
def complete_my_module
|
|
respond_to do |format|
|
|
if @my_module.uncompleted? && @my_module.check_completness_status
|
|
@my_module.complete
|
|
@my_module.save
|
|
task_completion_activity
|
|
format.json do
|
|
render json: {
|
|
task_button_title: t('my_modules.buttons.uncomplete'),
|
|
module_header_due_date_label: render_to_string(
|
|
partial: 'my_modules/module_header_due_date_label.html.erb',
|
|
locals: { my_module: @my_module }
|
|
),
|
|
module_state_label: render_to_string(
|
|
partial: 'my_modules/module_state_label.html.erb',
|
|
locals: { my_module: @my_module }
|
|
)
|
|
}, status: :ok
|
|
end
|
|
else
|
|
format.json { render json: {}, status: :unprocessable_entity }
|
|
end
|
|
end
|
|
end
|
|
|
|
private
|
|
|
|
def task_completion_activity
|
|
completed = @my_module.completed?
|
|
str = 'activities.uncomplete_module'
|
|
str = 'activities.complete_module' if completed
|
|
message = t(str,
|
|
user: current_user.full_name,
|
|
module: @my_module.name)
|
|
Activity.create(
|
|
user: current_user,
|
|
project: @project,
|
|
experiment: @experiment,
|
|
my_module: @my_module,
|
|
message: message,
|
|
type_of: completed ? :complete_task : :uncomplete_task
|
|
)
|
|
start_work_on_next_task_notification
|
|
end
|
|
|
|
def start_work_on_next_task_notification
|
|
if @my_module.completed?
|
|
title = t('notifications.start_work_on_next_task',
|
|
user: current_user.full_name,
|
|
module: @my_module.name)
|
|
message = t('notifications.start_work_on_next_task_message',
|
|
project: link_to(@project.name, project_url(@project)),
|
|
experiment: link_to(@experiment.name,
|
|
canvas_experiment_url(@experiment)),
|
|
my_module: link_to(@my_module.name,
|
|
protocols_my_module_url(@my_module)))
|
|
notification = Notification.create(
|
|
type_of: :recent_changes,
|
|
title: sanitize_input(title, %w(strong a)),
|
|
message: sanitize_input(message, %w(strong a)),
|
|
generator_user_id: current_user.id
|
|
)
|
|
# create notification for all users on the next modules in the workflow
|
|
@my_module.my_modules.map(&:users).flatten.uniq.each do |target_user|
|
|
next if target_user == current_user || !target_user.recent_notification
|
|
UserNotification.create(notification: notification, user: target_user)
|
|
end
|
|
end
|
|
end
|
|
|
|
def load_vars
|
|
@my_module = MyModule.find_by_id(params[:id])
|
|
if @my_module
|
|
@experiment = @my_module.experiment
|
|
@project = @my_module.experiment.project if @experiment
|
|
else
|
|
render_404
|
|
end
|
|
end
|
|
|
|
def load_repository
|
|
@repository = Repository.find_by_id(params[:repository_id])
|
|
render_404 unless @repository
|
|
render_403 unless can_read_team?(@repository.team)
|
|
end
|
|
|
|
def load_projects_tree
|
|
@projects_tree = current_user.projects_tree(current_team, nil)
|
|
end
|
|
|
|
def check_manage_permissions
|
|
render_403 && return unless can_manage_module?(@my_module)
|
|
end
|
|
|
|
def check_manage_permissions_archive
|
|
render_403 && return unless if my_module_params[:archived] == 'false'
|
|
can_restore_module?(@my_module)
|
|
else
|
|
can_manage_module?(@my_module)
|
|
end
|
|
end
|
|
|
|
def check_view_permissions
|
|
render_403 unless can_read_experiment?(@my_module.experiment)
|
|
end
|
|
|
|
def check_assign_repository_records_permissions
|
|
render_403 unless module_page? &&
|
|
can_assign_repository_rows_to_module?(@my_module)
|
|
end
|
|
|
|
def check_assign_samples_permissions
|
|
render_403 unless module_page? &&
|
|
can_assign_sample_to_module?(@my_module)
|
|
end
|
|
|
|
def check_complete_module_permission
|
|
render_403 unless can_complete_module?(@my_module)
|
|
end
|
|
|
|
def my_module_params
|
|
params.require(:my_module).permit(:name, :description, :due_date,
|
|
:archived)
|
|
end
|
|
end
|