scinote-web/config/routes.rb

Rails.application.routes.draw do
  devise_for :users, controllers: { registrations: 'users/registrations',
                                    sessions: 'users/sessions',
                                    invitations: 'users/invitations',
                                    confirmations: 'users/confirmations' }

  root 'projects#index'

  # Save sample table state
  post '/state_save/:team_id/:user_id',
       to: 'user_samples#save_samples_table_status',
       as: 'save_samples_table_status',
       defaults: { format: 'json' }

  post '/state_load/:team_id/:user_id',
       to: 'user_samples#load_samples_table_status',
       as: 'load_samples_table_status',
       defaults: { format: 'json' }

  resources :activities, only: [:index]

  get 'forbidden', to: 'application#forbidden', as: 'forbidden'
  get 'not_found', to: 'application#not_found', as: 'not_found'

  # Settings
  get 'users/settings/account/preferences',
      to: 'users/settings/account/preferences#index',
      as: 'preferences'
  put 'users/settings/account/preferences',
      to: 'users/settings/account/preferences#update',
      as: 'update_preferences'
  get 'users/settings/account/preferences/tutorial',
      to: 'users/settings/account/preferences#tutorial',
      as: 'tutorial'
  post 'users/settings/account/preferences/reset_tutorial/',
       to: 'users/settings/account/preferences#reset_tutorial',
       as: 'reset_tutorial'
  post 'users/settings/account/preferences/notifications_settings',
       to: 'users/settings/account/preferences#notifications_settings',
       as: 'notifications_settings',
       defaults: { format: 'json' }

  # Change user's current team
  post 'users/settings/user_current_team',
       to: 'users/settings#user_current_team',
       as: 'user_current_team'

  get 'users/settings/teams',
      to: 'users/settings/teams#index',
      as: 'teams'
  post 'users/settings/teams/datatable',
       to: 'users/settings/teams#datatable',
       as: 'teams_datatable'
  get 'users/settings/teams/new',
      to: 'users/settings/teams#new',
      as: 'new_team'
  post 'users/settings/teams',
       to: 'users/settings/teams#create',
       as: 'create_team'
  get 'users/settings/teams/:id',
      to: 'users/settings/teams#show',
      as: 'team'
  post 'users/settings/teams/:id/users_datatable',
       to: 'users/settings/teams#users_datatable',
       as: 'team_users_datatable'
  get 'users/settings/teams/:id/name_html',
      to: 'users/settings/teams#name_html',
      as: 'team_name'
  get 'users/settings/teams/:id/description_html',
      to: 'users/settings/teams#description_html',
      as: 'team_description'
  put 'users/settings/teams/:id',
      to: 'users/settings/teams#update',
      as: 'update_team'
  delete 'users/settings/teams/:id',
         to: 'users/settings/teams#destroy',
         as: 'destroy_team'

  put 'users/settings/user_teams/:id',
      to: 'users/settings/user_teams#update',
      as: 'update_user_team'
  get 'users/settings/user_teams/:id/leave_html',
      to: 'users/settings/user_teams#leave_html',
      as: 'leave_user_team_html'
  get 'users/settings/user_teams/:id/destroy_html',
      to: 'users/settings/user_teams#destroy_html',
      as: 'destroy_user_team_html'
  delete 'users/settings/user_teams/:id',
         to: 'users/settings/user_teams#destroy',
         as: 'destroy_user_team'

  # Invite users
  devise_scope :user do
    post '/invite',
         to: 'users/invitations#invite_users',
         as: 'invite_users'
  end

  # Notifications
  get 'users/:id/recent_notifications',
      to: 'user_notifications#recent_notifications',
      as: 'recent_notifications',
      defaults: { format: 'json' }

  get 'users/:id/unseen_notification',
      to: 'user_notifications#unseen_notification',
      as: 'unseen_notification',
      defaults: { format: 'json' }

  get 'users/notifications',
      to: 'user_notifications#index',
      as: 'notifications'

  resources :teams do
    resources :samples, only: [:new, :create]
    resources :sample_types, except: [:show, :new] do
      get 'sample_type_element', to: 'sample_types#sample_type_element'
      get 'destroy_confirmation', to: 'sample_types#destroy_confirmation'
    end
    resources :sample_groups, except: [:show, :new] do
      get 'sample_group_element', to: 'sample_groups#sample_group_element'
      get 'destroy_confirmation', to: 'sample_groups#destroy_confirmation'
    end
    resources :custom_fields, only: [:create, :update, :destroy] do
      get 'destroy_html'
    end
    member do
      post 'parse_sheet'
      post 'import_samples'
      post 'export_samples'
      # Used for atwho (smart annotations)
      get 'atwho_users', to: 'at_who#users'
      get 'atwho_samples', to: 'at_who#samples'
      get 'atwho_projects', to: 'at_who#projects'
      get 'atwho_experiments', to: 'at_who#experiments'
      get 'atwho_my_modules', to: 'at_who#my_modules'
      get 'atwho_menu_items', to: 'at_who#menu_items'
    end
    match '*path',
          to: 'teams#routing_error',
          via: [:get, :post, :put, :patch]
  end

  get 'projects/archive', to: 'projects#archive', as: 'projects_archive'

  resources :projects, except: [:new, :destroy] do
    resources :user_projects, path: '/users',
              only: [:create, :index, :update, :destroy]
    resources :project_comments,
              path: '/comments',
              only: [:create, :index, :edit, :update, :destroy]
    # Activities popup (JSON) for individual project in projects index,
    # as well as all activities page for single project (HTML)
    resources :project_activities, path: '/activities', only: [:index]
    resources :tags, only: [:create, :update, :destroy]
    resources :reports,
              path: '/reports',
              only: [:index, :new, :create, :edit, :update] do
      collection do
        # The posts following here should in theory be gets,
        # but are posts because of parameters payload
        post 'generate', to: 'reports#generate'
        get 'new/', to: 'reports#new'
        get 'new/project_contents_modal',
            to: 'reports#project_contents_modal',
            as: :project_contents_modal
        post 'new/project_contents',
             to: 'reports#project_contents',
             as: :project_contents
        get 'new/experiment_contents_modal',
            to: 'reports#experiment_contents_modal',
            as: :experiment_contents_modal
        post 'new/experiment_contents',
             to: 'reports#experiment_contents',
             as: :experiment_contents
        get 'new/module_contents_modal',
            to: 'reports#module_contents_modal',
            as: :module_contents_modal
        post 'new/module_contents',
             to: 'reports#module_contents',
             as: :module_contents
        get 'new/step_contents_modal',
            to: 'reports#step_contents_modal',
            as: :step_contents_modal
        post 'new/step_contents',
             to: 'reports#step_contents',
             as: :step_contents
        get 'new/result_contents_modal',
            to: 'reports#result_contents_modal',
            as: :result_contents_modal
        post 'new/result_contents',
             to: 'reports#result_contents',
             as: :result_contents
        post '_save',
             to: 'reports#save_modal',
             as: :save_modal
        post 'destroy', as: :destroy # Destroy multiple entries at once
      end
    end
    resources :experiments,
              only: [:new, :create, :edit, :update],
              defaults: { format: 'json' }
    member do
      # Notifications popup for individual project in projects index
      get 'notifications'
      get 'samples' # Samples for single project
      # Renders sample datatable for single project (ajax action)
      post 'samples_index'
      get 'experiment_archive' # Experiment archive for single project
      post :delete_samples,
           constraints: CommitParamRouting.new(
             ProjectsController::DELETE_SAMPLES
           ),
           action: :delete_samples
    end

    # This route is defined outside of member block
    # to preserve original :project_id parameter in URL.
    get 'users/edit', to: 'user_projects#index_edit'
  end

  resources :experiments do
    member do
      get 'canvas' # Overview/structure for single experiment
      # AJAX-loaded canvas edit mode (from canvas)
      get 'canvas/edit', to: 'canvas#edit'
      get 'canvas/full_zoom', to: 'canvas#full_zoom' # AJAX-loaded canvas zoom
      # AJAX-loaded canvas zoom
      get 'canvas/medium_zoom', to: 'canvas#medium_zoom'
      get 'canvas/small_zoom', to: 'canvas#small_zoom' # AJAX-loaded canvas zoom
      post 'canvas', to: 'canvas#update' # Save updated canvas action
      get 'module_archive' # Module archive for single experiment
      get 'archive' # archive experiment
      get 'clone_modal' # return modal with clone options
      post 'clone' # clone experiment
      get 'move_modal' # return modal with move options
      post 'move' # move experiment
      get 'samples' # Samples for single project
      get 'updated_img' # Checks if the workflow image is updated
      get 'fetch_workflow_img' # Get udated workflow img
      # Renders sample datatable for single project (ajax action)
      post 'samples_index'
      post :delete_samples,
           constraints: CommitParamRouting.new(
             ExperimentsController::DELETE_SAMPLES
           ),
           action: :delete_samples
    end
  end

  # Show action is a popup (JSON) for individual module in full-zoom canvas,
  # as well as 'module info' page for single module (HTML)
  resources :my_modules, path: '/modules', only: [:show, :update] do
    resources :my_module_tags, path: '/tags', only: [:index, :create, :destroy]
    resources :user_my_modules, path: '/users',
              only: [:index, :create, :destroy]
    resources :my_module_comments,
              path: '/comments',
              only: [:index, :create, :edit, :update, :destroy]
    resources :sample_my_modules, path: '/samples_index', only: [:index]
    resources :result_texts, only: [:new, :create]
    resources :result_assets, only: [:new, :create]
    resources :result_tables, only: [:new, :create]
    member do
      # AJAX popup accessed from full-zoom canvas for single module,
      # as well as full activities view (HTML) for single module
      get 'description'
      get 'activities'
      get 'activities_tab' # Activities in tab view for single module
      get 'due_date'
      get 'protocols' # Protocols view for single module
      get 'results' # Results view for single module
      get 'samples' # Samples view for single module
      get 'archive' # Archive view for single module
      # Renders sample datatable for single module (ajax action)
      post 'samples_index'
      post :assign_samples,
           constraints: CommitParamRouting.new(
             MyModulesController::ASSIGN_SAMPLES
           ),
           action: :assign_samples
      post :assign_samples,
           constraints: CommitParamRouting.new(
             MyModulesController::UNASSIGN_SAMPLES
           ),
           action: :unassign_samples
      post :assign_samples,
           constraints: CommitParamRouting.new(
             MyModulesController::DELETE_SAMPLES
           ),
           action: :delete_samples
    end

    # Those routes are defined outside of member block
    # to preserve original id parameters in URL.
    get 'tags/edit', to: 'my_module_tags#index_edit'
    get 'users/edit', to: 'user_my_modules#index_edit'
  end

  resources :steps, only: [:edit, :update, :destroy, :show] do
    resources :step_comments,
              path: '/comments',
              only: [:create, :index, :edit, :update, :destroy]
    member do
      post 'checklistitem_state'
      post 'toggle_step_state'
      get 'move_down'
      get 'move_up'
    end
  end

  resources :results, only: [:update, :destroy] do
    resources :result_comments,
              path: '/comments',
              only: [:create, :index, :edit, :update, :destroy]
  end

  resources :samples, only: [:edit, :update, :destroy]
  get 'samples/:id', to: 'samples#show'

  resources :result_texts, only: [:edit, :update, :destroy]
  get 'result_texts/:id/download' => 'result_texts#download',
    as: :result_text_download
  resources :result_assets, only: [:edit, :update, :destroy]
  get 'result_assets/:id/download' => 'result_assets#download',
    as: :result_asset_download
  resources :result_tables, only: [:edit, :update, :destroy]
  get 'result_tables/:id/download' => 'result_tables#download',
    as: :result_table_download

  resources :protocols, only: [:index, :edit, :create] do
    resources :steps, only: [:new, :create]
    member do
      get 'linked_children', to: 'protocols#linked_children'
      post 'linked_children_datatable',
           to: 'protocols#linked_children_datatable'
      get 'preview', to: 'protocols#preview'
      patch 'metadata', to: 'protocols#update_metadata'
      patch 'keywords', to: 'protocols#update_keywords'
      post 'clone', to: 'protocols#clone'
      get 'unlink_modal', to: 'protocols#unlink_modal'
      post 'unlink', to: 'protocols#unlink'
      get 'revert_modal', to: 'protocols#revert_modal'
      post 'revert', to: 'protocols#revert'
      get 'update_parent_modal', to: 'protocols#update_parent_modal'
      post 'update_parent', to: 'protocols#update_parent'
      get 'update_from_parent_modal', to: 'protocols#update_from_parent_modal'
      post 'update_from_parent', to: 'protocols#update_from_parent'
      post 'load_from_repository_datatable',
           to: 'protocols#load_from_repository_datatable'
      get 'load_from_repository_modal',
          to: 'protocols#load_from_repository_modal'
      post 'load_from_repository', to: 'protocols#load_from_repository'
      post 'load_from_file', to: 'protocols#load_from_file'
      get 'copy_to_repository_modal', to: 'protocols#copy_to_repository_modal'
      post 'copy_to_repository', to: 'protocols#copy_to_repository'
      get 'protocol_status_bar', to: 'protocols#protocol_status_bar'
      get 'updated_at_label', to: 'protocols#updated_at_label'
      get 'edit_name_modal', to: 'protocols#edit_name_modal'
      get 'edit_keywords_modal', to: 'protocols#edit_keywords_modal'
      get 'edit_authors_modal', to: 'protocols#edit_authors_modal'
      get 'edit_description_modal', to: 'protocols#edit_description_modal'
    end
    collection do
      get 'create_new_modal', to: 'protocols#create_new_modal'
      post 'datatable', to: 'protocols#datatable'
      post 'make_private', to: 'protocols#make_private'
      post 'publish', to: 'protocols#publish'
      post 'archive', to: 'protocols#archive'
      post 'restore', to: 'protocols#restore'
      post 'import', to: 'protocols#import'
      get 'export', to: 'protocols#export'
    end
  end

  get 'search' => 'search#index'
  get 'search/new' => 'search#new', as: :new_search

  # We cannot use 'resources :assets' because assets is a reserved route
  # in Rails (assets pipeline) and causes funky behavior
  get 'files/:id/present', to: 'assets#file_present', as: 'file_present_asset'
  get 'files/:id/large_url',
      to: 'assets#large_image_url',
      as: 'large_image_url_asset'
  get 'files/:id/download', to: 'assets#download', as: 'download_asset'
  post 'asset_signature' => 'assets#signature'

  devise_scope :user do
    get 'avatar/:id/:style' => 'users/registrations#avatar', as: 'avatar'
    post 'avatar_signature' => 'users/registrations#signature'
    get 'users/auth_token_sign_in' => 'users/sessions#auth_token_create'
  end
end