mirror of
https://github.com/scinote-eln/scinote-web.git
synced 2024-11-11 10:06:53 +08:00
1082 lines
29 KiB
Ruby
1082 lines
29 KiB
Ruby
class ProtocolsController < ApplicationController
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include RenamingUtil
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include ProtocolsImporter
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include ProtocolsExporter
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include InputSanitizeHelper
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before_action :check_create_permissions, only: [
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:create_new_modal,
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:create
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]
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before_action :check_clone_permissions, only: [ :clone ]
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before_action :check_view_permissions, only: [
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:protocol_status_bar,
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:updated_at_label,
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:preview,
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:linked_children,
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:linked_children_datatable
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]
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before_action :check_edit_permissions, only: [
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:edit,
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:update_metadata,
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:update_keywords,
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:edit_name_modal,
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:edit_keywords_modal,
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:edit_authors_modal,
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:edit_description_modal
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]
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before_action :check_view_all_permissions, only: [
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:index,
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:datatable
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]
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before_action :check_unlink_permissions, only: [
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:unlink,
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:unlink_modal
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]
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before_action :check_revert_permissions, only: [
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:revert,
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:revert_modal
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]
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before_action :check_update_parent_permissions, only: [
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:update_parent,
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:update_parent_modal
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]
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before_action :check_update_from_parent_permissions, only: [
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:update_from_parent,
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:update_from_parent_modal
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]
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before_action :check_load_from_repository_views_permissions, only: [
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:load_from_repository_modal,
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:load_from_repository_datatable
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]
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before_action :check_load_from_repository_permissions, only: [
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:load_from_repository
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]
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before_action :check_load_from_file_permissions, only: [
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:load_from_file
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]
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before_action :check_copy_to_repository_permissions, only: [
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:copy_to_repository,
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:copy_to_repository_modal
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]
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before_action :check_make_private_permissions, only: [ :make_private ]
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before_action :check_publish_permissions, only: [ :publish ]
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before_action :check_archive_permissions, only: [ :archive ]
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before_action :check_restore_permissions, only: [ :restore ]
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before_action :check_import_permissions, only: [ :import ]
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before_action :check_export_permissions, only: [ :export ]
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def index
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end
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def datatable
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respond_to do |format|
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format.json {
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render json: ::ProtocolsDatatable.new(
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view_context,
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@current_team,
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@type,
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current_user
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)
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}
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end
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end
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def preview
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respond_to do |format|
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format.json do
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render json: {
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title: I18n.t('protocols.index.preview.title',
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protocol: escape_input(@protocol.name)),
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html: render_to_string(
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partial: 'protocols/index/protocol_preview_modal_body.html.erb',
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locals: { protocol: @protocol }
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),
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footer: render_to_string(
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partial: 'protocols/index/protocol_preview_modal_footer.html.erb',
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locals: { protocol: @protocol }
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)
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}
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end
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end
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end
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def linked_children
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respond_to do |format|
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format.json {
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render json: {
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title: I18n.t('protocols.index.linked_children.title',
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protocol: escape_input(@protocol.name)),
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html: render_to_string({
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partial: "protocols/index/linked_children_modal_body.html.erb",
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locals: { protocol: @protocol }
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})
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}
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}
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end
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end
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def linked_children_datatable
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respond_to do |format|
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format.json {
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render json: ::ProtocolLinkedChildrenDatatable.new(
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view_context,
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@protocol,
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current_user,
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self
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)
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}
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end
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end
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def make_private
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move_protocol("make_private")
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end
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def publish
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move_protocol("publish")
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end
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def archive
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move_protocol("archive")
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end
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def restore
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move_protocol("restore")
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end
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def edit
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end
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def update_metadata
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@protocol.record_timestamps = false
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@protocol.assign_attributes(metadata_params)
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respond_to do |format|
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if @protocol.save
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format.json {
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render json: {
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updated_at_label: render_to_string(
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partial: "protocols/header/updated_at_label.html.erb"
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),
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name_label: render_to_string(
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partial: "protocols/header/name_label.html.erb"
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),
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authors_label: render_to_string(
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partial: "protocols/header/authors_label.html.erb"
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),
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description_label: render_to_string(
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partial: "protocols/header/description_label.html.erb"
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)
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}
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}
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else
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format.json {
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render json: @protocol.errors,
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status: :unprocessable_entity
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}
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end
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end
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end
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def update_keywords
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respond_to do |format|
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# sanitize user input
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params[:keywords].collect! do |keyword|
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escape_input(keyword)
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end
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if @protocol.update_keywords(params[:keywords])
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format.json {
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render json: {
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updated_at_label: render_to_string(
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partial: "protocols/header/updated_at_label.html.erb"
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),
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keywords_label: render_to_string(
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partial: "protocols/header/keywords_label.html.erb"
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)
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}
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}
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else
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format.json { render json: {}, status: :unprocessable_entity }
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end
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end
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end
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def create
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@protocol = Protocol.new(
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team: @current_team,
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protocol_type: Protocol.protocol_types[@type == :public ? :in_repository_public : :in_repository_private],
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added_by: current_user
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)
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@protocol.assign_attributes(create_params)
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ts = Time.now
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@protocol.record_timestamps = false
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@protocol.created_at = ts
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@protocol.updated_at = ts
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if @type == :public
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@protocol.published_on = ts
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end
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respond_to do |format|
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if @protocol.save
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format.json {
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render json: {
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url: edit_protocol_path(
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@protocol,
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team: @current_team,
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type: @type
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)
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}
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}
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else
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format.json {
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render json: @protocol.errors,
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status: :unprocessable_entity
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}
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end
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end
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end
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def clone
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cloned = nil
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Protocol.transaction do
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begin
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cloned = @original.deep_clone_repository(current_user)
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rescue Exception
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raise ActiveRecord:: Rollback
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end
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end
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respond_to do |format|
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if cloned != nil
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flash[:success] = t(
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"protocols.index.clone.success_flash",
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original: @original.name,
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new: cloned.name
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)
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flash.keep(:success)
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format.json { render json: {}, status: :ok }
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else
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flash[:error] = t(
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"protocols.index.clone.error_flash",
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original: @original.name
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)
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flash.keep(:error)
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format.json { render json: {}, status: :bad_request }
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end
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end
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end
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def copy_to_repository
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link_protocols = can_link_copied_protocol_in_repository(@protocol) && params[:link]
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respond_to do |format|
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transaction_error = false
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Protocol.transaction do
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begin
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@new = @protocol.copy_to_repository(
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copy_to_repository_params[:name],
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copy_to_repository_params[:protocol_type],
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link_protocols,
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current_user
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)
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rescue Exception
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transaction_error = true
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raise ActiveRecord:: Rollback
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end
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end
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if transaction_error
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# Bad request error
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format.json {
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render json: {
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message: t("my_modules.protocols.copy_to_repository_modal.error_400")
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},
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status: :bad_request
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}
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elsif @new.invalid?
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# Render errors
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format.json {
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render json: @new.errors,
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status: :unprocessable_entity
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}
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else
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# Everything good, render 200
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format.json { render json: { refresh: link_protocols }, status: :ok }
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end
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end
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end
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def unlink
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respond_to do |format|
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transaction_error = false
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Protocol.transaction do
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begin
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@protocol.unlink
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rescue Exception
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transaction_error = true
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raise ActiveRecord:: Rollback
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end
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end
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if transaction_error
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# Bad request error
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format.json {
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render json: {
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message: t("my_modules.protocols.unlink_error")
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},
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status: :bad_request
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}
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else
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# Everything good, display flash & render 200
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flash[:success] = t(
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"my_modules.protocols.unlink_flash",
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)
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flash.keep(:success)
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format.json { render json: {}, status: :ok }
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end
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end
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end
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def revert
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respond_to do |format|
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if @protocol.can_destroy?
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transaction_error = false
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Protocol.transaction do
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begin
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# Revert is basically update from parent
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@protocol.update_from_parent(current_user)
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rescue Exception
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transaction_error = true
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raise ActiveRecord:: Rollback
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end
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end
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if transaction_error
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# Bad request error
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format.json do
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render json: {
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message: t('my_modules.protocols.revert_error')
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},
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status: :bad_request
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end
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else
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# Everything good, display flash & render 200
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flash[:success] = t(
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'my_modules.protocols.revert_flash'
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)
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flash.keep(:success)
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format.json { render json: {}, status: :ok }
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end
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else
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format.json do
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render json: {
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message: t('my_modules.protocols.revert_error_locked')
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}, status: :bad_request
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end
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end
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end
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end
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def update_parent
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respond_to do |format|
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if @protocol.parent.can_destroy?
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transaction_error = false
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Protocol.transaction do
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begin
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@protocol.update_parent(current_user)
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rescue Exception
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transaction_error = true
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raise ActiveRecord:: Rollback
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end
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end
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if transaction_error
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# Bad request error
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format.json {
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render json: {
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message: t("my_modules.protocols.update_parent_error")
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},
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status: :bad_request
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}
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else
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# Everything good, record activity, display flash & render 200
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Activity.create(
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type_of: :revert_protocol,
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project: @protocol.my_module.experiment.project,
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my_module: @protocol.my_module,
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user: current_user,
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message: I18n.t(
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'activities.revert_protocol',
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user: current_user.full_name,
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protocol: @protocol.name
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)
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)
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flash[:success] = t(
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"my_modules.protocols.update_parent_flash",
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)
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flash.keep(:success)
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format.json { render json: {}, status: :ok }
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end
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else
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format.json do
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render json: {
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message: t('my_modules.protocols.update_parent_error_locked')
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}, status: :bad_request
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end
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end
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end
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end
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def update_from_parent
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respond_to do |format|
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if @protocol.can_destroy?
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transaction_error = false
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Protocol.transaction do
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begin
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@protocol.update_from_parent(current_user)
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rescue Exception
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transaction_error = true
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raise ActiveRecord:: Rollback
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end
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end
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if transaction_error
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# Bad request error
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format.json {
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render json: {
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message: t("my_modules.protocols.update_from_parent_error")
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},
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status: :bad_request
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}
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else
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# Everything good, display flash & render 200
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flash[:success] = t(
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"my_modules.protocols.update_from_parent_flash",
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)
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flash.keep(:success)
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format.json { render json: {}, status: :ok }
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end
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else
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format.json do
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render json: {
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message: t('my_modules.protocols.update_from_parent_error_locked')
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}, status: :bad_request
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end
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end
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end
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end
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def load_from_repository
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respond_to do |format|
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if @protocol.can_destroy?
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transaction_error = false
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Protocol.transaction do
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begin
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@protocol.load_from_repository(@source, current_user)
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rescue Exception
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transaction_error = true
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raise ActiveRecord:: Rollback
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end
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end
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if transaction_error
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# Bad request error
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format.json do
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render json: {
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message: t('my_modules.protocols.load_from_repository_error')
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},
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status: :bad_request
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end
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else
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# Everything good, record activity, display flash & render 200
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Activity.create(
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type_of: :load_protocol_from_repository,
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project: @protocol.my_module.experiment.project,
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my_module: @protocol.my_module,
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user: current_user,
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message: I18n.t(
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'activities.load_protocol_from_repository',
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user: current_user.full_name,
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protocol: @source.name
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)
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)
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flash[:success] = t('my_modules.protocols.load_from_repository_flash')
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flash.keep(:success)
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format.json { render json: {}, status: :ok }
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end
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else
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format.json do
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render json: {
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message: t('my_modules.protocols.load_from_repository_error_locked')
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}, status: :bad_request
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end
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end
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end
|
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end
|
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|
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def load_from_file
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# This is actually very similar to import
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respond_to do |format|
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if @protocol.can_destroy?
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transaction_error = false
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Protocol.transaction do
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begin
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import_into_existing(
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@protocol, @protocol_json, current_user, current_team
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)
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rescue Exception
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transaction_error = true
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raise ActiveRecord:: Rollback
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end
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end
|
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|
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if transaction_error
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format.json {
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render json: { status: :error }, status: :bad_request
|
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}
|
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else
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# Everything good, record activity, display flash & render 200
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Activity.create(
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type_of: :load_protocol_from_file,
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project: @protocol.my_module.experiment.project,
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my_module: @protocol.my_module,
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user: current_user,
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message: I18n.t(
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|
'activities.load_protocol_from_file',
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user: current_user.full_name,
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protocol: @protocol_json[:name]
|
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)
|
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)
|
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flash[:success] = t(
|
|
'my_modules.protocols.load_from_file_flash',
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)
|
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flash.keep(:success)
|
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format.json {
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render json: { status: :ok }, status: :ok
|
|
}
|
|
end
|
|
else
|
|
format.json do
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render json: { status: :locked }, status: :bad_request
|
|
end
|
|
end
|
|
end
|
|
end
|
|
|
|
def import
|
|
protocol = nil
|
|
respond_to do |format|
|
|
transaction_error = false
|
|
Protocol.transaction do
|
|
begin
|
|
protocol = import_new_protocol(@protocol_json, @team, @type, current_user)
|
|
rescue Exception
|
|
transaction_error = true
|
|
raise ActiveRecord:: Rollback
|
|
end
|
|
end
|
|
|
|
p_name =
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if @protocol_json['name'].present? && !@protocol_json['name'].empty?
|
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escape_input(@protocol_json['name'])
|
|
else
|
|
t('protocols.index.no_protocol_name')
|
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end
|
|
if transaction_error
|
|
format.json {
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render json: { name: p_name, status: :bad_request }, status: :bad_request
|
|
}
|
|
else
|
|
format.json {
|
|
render json: {
|
|
name: p_name, new_name: protocol.name, status: :ok
|
|
},
|
|
status: :ok
|
|
}
|
|
end
|
|
end
|
|
end
|
|
|
|
def export
|
|
# Make a zip output stream and send it to the client
|
|
respond_to do |format|
|
|
format.html do
|
|
z_output_stream = Zip::OutputStream.write_buffer do |ostream|
|
|
ostream.put_next_entry('scinote.xml')
|
|
ostream.print(generate_envelope_xml(@protocols))
|
|
ostream.put_next_entry('scinote.xsd')
|
|
ostream.print(generate_envelope_xsd)
|
|
ostream.put_next_entry('eln.xsd')
|
|
ostream.print(generate_eln_xsd)
|
|
|
|
# Create folder and xml file for each protocol and populate it
|
|
@protocols.each do |protocol|
|
|
protocol_dir = get_guid(protocol.id).to_s
|
|
ostream.put_next_entry("#{protocol_dir}/eln.xml")
|
|
ostream.print(generate_protocol_xml(protocol))
|
|
# Add assets to protocol folder
|
|
next if protocol.steps.count <= 0
|
|
protocol.steps.order(:id).each do |step|
|
|
step_guid = get_guid(step.id)
|
|
step_dir = "#{protocol_dir}/#{step_guid}"
|
|
next if step.assets.count <= 0
|
|
step.assets.order(:id).each do |asset|
|
|
asset_guid = get_guid(asset.id)
|
|
asset_file_name = asset_guid.to_s +
|
|
File.extname(asset.file_file_name).to_s
|
|
ostream.put_next_entry("#{step_dir}/#{asset_file_name}")
|
|
input_file = asset.open
|
|
ostream.print(input_file.read)
|
|
input_file.close
|
|
end
|
|
end
|
|
end
|
|
end
|
|
z_output_stream.rewind
|
|
|
|
protocol_name = get_protocol_name(@protocols[0])
|
|
|
|
# Now generate filename of the archive and send file to user
|
|
if @protocols.count == 1
|
|
# Try to construct an OS-safe file name
|
|
file_name = 'protocol.eln'
|
|
unless protocol_name.nil?
|
|
escaped_name = protocol_name.gsub(/[^0-9a-zA-Z\-.,_]/i, '_')
|
|
.downcase[0..Constants::NAME_MAX_LENGTH]
|
|
file_name = escaped_name + '.eln' unless escaped_name.empty?
|
|
end
|
|
elsif @protocols.length > 1
|
|
file_name = 'protocols.eln'
|
|
end
|
|
send_data(z_output_stream.read, filename: file_name)
|
|
end
|
|
end
|
|
end
|
|
|
|
def unlink_modal
|
|
respond_to do |format|
|
|
format.json {
|
|
render json: {
|
|
title: t("my_modules.protocols.confirm_link_update_modal.unlink_title"),
|
|
message: t("my_modules.protocols.confirm_link_update_modal.unlink_message"),
|
|
btn_text: t("my_modules.protocols.confirm_link_update_modal.unlink_btn_text"),
|
|
url: unlink_protocol_path(@protocol)
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
def revert_modal
|
|
respond_to do |format|
|
|
format.json {
|
|
render json: {
|
|
title: t("my_modules.protocols.confirm_link_update_modal.revert_title"),
|
|
message: t("my_modules.protocols.confirm_link_update_modal.revert_message"),
|
|
btn_text: t("my_modules.protocols.confirm_link_update_modal.revert_btn_text"),
|
|
url: revert_protocol_path(@protocol)
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
def update_parent_modal
|
|
respond_to do |format|
|
|
format.json {
|
|
render json: {
|
|
title: t("my_modules.protocols.confirm_link_update_modal.update_parent_title"),
|
|
message: t("my_modules.protocols.confirm_link_update_modal.update_parent_message"),
|
|
btn_text: t("general.update"),
|
|
url: update_parent_protocol_path(@protocol)
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
def update_from_parent_modal
|
|
respond_to do |format|
|
|
format.json {
|
|
render json: {
|
|
title: t("my_modules.protocols.confirm_link_update_modal.update_self_title"),
|
|
message: t("my_modules.protocols.confirm_link_update_modal.update_self_message"),
|
|
btn_text: t("general.update"),
|
|
url: update_from_parent_protocol_path(@protocol)
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
def load_from_repository_datatable
|
|
@protocol = Protocol.find_by_id(params[:id])
|
|
@type = (params[:type] || "public").to_sym
|
|
respond_to do |format|
|
|
format.json {
|
|
render json: ::LoadFromRepositoryProtocolsDatatable.new(
|
|
view_context,
|
|
@protocol.team,
|
|
@type,
|
|
current_user
|
|
)
|
|
}
|
|
end
|
|
end
|
|
|
|
def load_from_repository_modal
|
|
@protocol = Protocol.find_by_id(params[:id])
|
|
respond_to do |format|
|
|
format.json {
|
|
render json: {
|
|
html: render_to_string({
|
|
partial: "my_modules/protocols/load_from_repository_modal_body.html.erb"
|
|
})
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
def copy_to_repository_modal
|
|
@new = Protocol.new
|
|
@original = Protocol.find(params[:id])
|
|
respond_to do |format|
|
|
format.json {
|
|
render json: {
|
|
html: render_to_string({
|
|
partial: "my_modules/protocols/copy_to_repository_modal_body.html.erb"
|
|
})
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
def protocol_status_bar
|
|
respond_to do |format|
|
|
format.json {
|
|
render json: {
|
|
html: render_to_string({
|
|
partial: "my_modules/protocols/protocol_status_bar.html.erb"
|
|
})
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
def updated_at_label
|
|
respond_to do |format|
|
|
format.json {
|
|
render json: {
|
|
html: render_to_string({
|
|
partial: "protocols/header/updated_at_label.html.erb"
|
|
})
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
def create_new_modal
|
|
@new_protocol = Protocol.new
|
|
respond_to do |format|
|
|
format.json {
|
|
render json: {
|
|
html: render_to_string({
|
|
partial: "protocols/index/create_new_modal_body.html.erb"
|
|
})
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
def edit_name_modal
|
|
respond_to do |format|
|
|
format.json {
|
|
render json: {
|
|
title: I18n.t('protocols.header.edit_name_modal.title',
|
|
protocol: escape_input(@protocol.name)),
|
|
html: render_to_string({
|
|
partial: "protocols/header/edit_name_modal_body.html.erb"
|
|
})
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
def edit_keywords_modal
|
|
respond_to do |format|
|
|
format.json {
|
|
render json: {
|
|
title: I18n.t('protocols.header.edit_keywords_modal.title',
|
|
protocol: escape_input(@protocol.name)),
|
|
html: render_to_string({
|
|
partial: "protocols/header/edit_keywords_modal_body.html.erb"
|
|
}),
|
|
keywords: @protocol.team.protocol_keywords_list
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
def edit_authors_modal
|
|
respond_to do |format|
|
|
format.json {
|
|
render json: {
|
|
title: I18n.t('protocols.header.edit_authors_modal.title',
|
|
protocol: escape_input(@protocol.name)),
|
|
html: render_to_string({
|
|
partial: "protocols/header/edit_authors_modal_body.html.erb"
|
|
})
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
def edit_description_modal
|
|
respond_to do |format|
|
|
format.json {
|
|
render json: {
|
|
title: I18n.t('protocols.header.edit_description_modal.title',
|
|
protocol: escape_input(@protocol.name)),
|
|
html: render_to_string({
|
|
partial: "protocols/header/edit_description_modal_body.html.erb"
|
|
})
|
|
}
|
|
}
|
|
end
|
|
end
|
|
|
|
private
|
|
|
|
def move_protocol(action)
|
|
rollbacked = false
|
|
results = []
|
|
begin
|
|
Protocol.transaction do
|
|
@protocols.find_each do |protocol|
|
|
result = {
|
|
name: protocol.name
|
|
}
|
|
|
|
success = protocol.method(action).call(current_user)
|
|
|
|
# Try renaming protocol
|
|
unless success
|
|
rename_record(protocol, :name)
|
|
success = protocol.method(action).call(current_user)
|
|
end
|
|
|
|
result[:new_name] = protocol.name
|
|
result[:type] = protocol.protocol_type
|
|
result[:success] = success
|
|
results << result
|
|
end
|
|
end
|
|
rescue
|
|
rollbacked = true
|
|
end
|
|
|
|
respond_to do |format|
|
|
unless rollbacked
|
|
format.json {
|
|
render json: {
|
|
html: render_to_string({
|
|
partial: "protocols/index/results_modal_body.html.erb",
|
|
locals: { results: results, en_action: "#{action}_results" }
|
|
})
|
|
}
|
|
}
|
|
else
|
|
format.json {
|
|
render json: {}, status: :bad_request
|
|
}
|
|
end
|
|
end
|
|
end
|
|
|
|
def load_team_and_type
|
|
@current_team = current_team
|
|
# :public, :private or :archive
|
|
@type = (params[:type] || "public").to_sym
|
|
end
|
|
|
|
def check_view_all_permissions
|
|
load_team_and_type
|
|
|
|
render_403 unless can_view_team_protocols(@current_team)
|
|
end
|
|
|
|
def check_view_permissions
|
|
@protocol = Protocol.find_by_id(params[:id])
|
|
if @protocol.blank? || !can_view_protocol(@protocol)
|
|
respond_to { |f| f.json { render json: {}, status: :unauthorized } }
|
|
end
|
|
end
|
|
|
|
def check_create_permissions
|
|
load_team_and_type
|
|
|
|
if !can_create_new_protocol(@current_team) || @type == :archive
|
|
render_403
|
|
end
|
|
end
|
|
|
|
def check_clone_permissions
|
|
load_team_and_type
|
|
@original = Protocol.find_by_id(params[:id])
|
|
|
|
if @original.blank? ||
|
|
!can_clone_protocol(@original) || @type == :archive
|
|
render_403
|
|
end
|
|
end
|
|
|
|
def check_edit_permissions
|
|
load_team_and_type
|
|
@protocol = Protocol.find_by_id(params[:id])
|
|
|
|
unless can_edit_protocol(@protocol)
|
|
render_403
|
|
end
|
|
end
|
|
|
|
def check_unlink_permissions
|
|
@protocol = Protocol.find_by_id(params[:id])
|
|
|
|
if @protocol.blank? || !can_unlink_protocol(@protocol)
|
|
render_403
|
|
end
|
|
end
|
|
|
|
def check_revert_permissions
|
|
@protocol = Protocol.find_by_id(params[:id])
|
|
|
|
if @protocol.blank? || !can_revert_protocol(@protocol)
|
|
render_403
|
|
end
|
|
end
|
|
|
|
def check_update_parent_permissions
|
|
@protocol = Protocol.find_by_id(params[:id])
|
|
|
|
if @protocol.blank? || !can_update_parent_protocol(@protocol)
|
|
render_403
|
|
end
|
|
end
|
|
|
|
def check_update_from_parent_permissions
|
|
@protocol = Protocol.find_by_id(params[:id])
|
|
|
|
if @protocol.blank? || !can_update_protocol_from_parent(@protocol)
|
|
render_403
|
|
end
|
|
end
|
|
|
|
def check_load_from_repository_views_permissions
|
|
@protocol = Protocol.find_by_id(params[:id])
|
|
|
|
if @protocol.blank? || !can_view_protocol(@protocol)
|
|
render_403
|
|
end
|
|
end
|
|
|
|
def check_load_from_repository_permissions
|
|
@protocol = Protocol.find_by_id(params[:id])
|
|
@source = Protocol.find_by_id(params[:source_id])
|
|
|
|
if @protocol.blank? || @source.blank? || !can_load_protocol_from_repository(@protocol, @source)
|
|
render_403
|
|
end
|
|
end
|
|
|
|
def check_load_from_file_permissions
|
|
@protocol_json = params[:protocol]
|
|
@protocol = Protocol.find_by_id(params[:id])
|
|
@my_module = @protocol.my_module
|
|
|
|
if @protocol_json.blank? ||
|
|
@protocol.blank? ||
|
|
@my_module.blank? ||
|
|
!can_load_protocol_into_module(@my_module)
|
|
render_403
|
|
end
|
|
end
|
|
|
|
def check_copy_to_repository_permissions
|
|
@protocol = Protocol.find_by_id(params[:id])
|
|
@my_module = @protocol.my_module
|
|
|
|
if @my_module.blank? or !can_copy_protocol_to_repository(@my_module)
|
|
render_403
|
|
end
|
|
end
|
|
|
|
def check_make_private_permissions
|
|
@protocols = Protocol.where(id: params[:protocol_ids])
|
|
@protocols.find_each do |protocol|
|
|
unless can_make_protocol_private(protocol) then
|
|
respond_to { |f| f.json { render json: {}, status: :unauthorized } }
|
|
return
|
|
end
|
|
end
|
|
end
|
|
|
|
def check_publish_permissions
|
|
@protocols = Protocol.where(id: params[:protocol_ids])
|
|
@protocols.find_each do |protocol|
|
|
unless can_publish_protocol(protocol) then
|
|
respond_to { |f| f.json { render json: {}, status: :unauthorized } }
|
|
return
|
|
end
|
|
end
|
|
end
|
|
|
|
def check_archive_permissions
|
|
@protocols = Protocol.where(id: params[:protocol_ids])
|
|
@protocols.find_each do |protocol|
|
|
unless can_archive_protocol(protocol) then
|
|
respond_to { |f| f.json { render json: {}, status: :unauthorized } }
|
|
return
|
|
end
|
|
end
|
|
end
|
|
|
|
def check_restore_permissions
|
|
@protocols = Protocol.where(id: params[:protocol_ids])
|
|
@protocols.find_each do |protocol|
|
|
unless can_restore_protocol(protocol) then
|
|
respond_to { |f| f.json { render json: {}, status: :unauthorized } }
|
|
return
|
|
end
|
|
end
|
|
end
|
|
|
|
def check_import_permissions
|
|
@protocol_json = params[:protocol]
|
|
@team = Team.find(params[:team_id])
|
|
@type = params[:type] ? params[:type].to_sym : nil
|
|
if !(
|
|
@protocol_json.present? &&
|
|
@team.present? &&
|
|
(@type == :public || @type == :private) &&
|
|
can_import_protocols(@team)
|
|
)
|
|
render_403
|
|
end
|
|
end
|
|
|
|
def check_export_permissions
|
|
@protocols = Protocol.where(id: params[:protocol_ids])
|
|
if @protocols.blank? || @protocols.any? { |p| !can_export_protocol(p) }
|
|
render_403
|
|
end
|
|
end
|
|
|
|
def copy_to_repository_params
|
|
params.require(:protocol).permit(:name, :protocol_type)
|
|
end
|
|
|
|
def create_params
|
|
params.require(:protocol).permit(:name)
|
|
end
|
|
|
|
def metadata_params
|
|
params.require(:protocol).permit(:name, :authors, :description)
|
|
end
|
|
|
|
end
|