mirror of
https://github.com/scinote-eln/scinote-web.git
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348 lines
9.9 KiB
Ruby
348 lines
9.9 KiB
Ruby
# frozen_string_literal: true
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class ExperimentsController < ApplicationController
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include SampleActions
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include TeamsHelper
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include InputSanitizeHelper
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include ActionView::Helpers::TextHelper
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include ApplicationHelper
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include Rails.application.routes.url_helpers
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before_action :set_experiment,
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except: %i(new create)
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before_action :set_project,
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only: %i(new create samples_index samples module_archive
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clone_modal move_modal delete_samples)
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before_action :load_projects_tree, only: %i(canvas samples module_archive)
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before_action :check_view_permissions,
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only: %i(canvas module_archive)
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before_action :check_manage_permissions, only: :edit
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before_action :check_archive_permissions, only: :archive
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before_action :check_clone_permissions, only: %i(clone_modal clone)
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before_action :check_move_permissions, only: %i(move_modal move)
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before_action :set_inline_name_editing, only: %i(canvas module_archive)
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layout 'fluid'.freeze
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# Action defined in SampleActions
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DELETE_SAMPLES = 'Delete'.freeze
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def new
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@experiment = Experiment.new
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respond_to do |format|
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format.json do
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render json: {
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html: render_to_string(
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partial: 'new_modal.html.erb'
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)
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}
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end
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end
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end
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def create
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@experiment = Experiment.new(experiment_params)
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@experiment.created_by = current_user
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@experiment.last_modified_by = current_user
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@experiment.project = @project
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if @experiment.save
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experiment_annotation_notification
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log_activity(:create_experiment)
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flash[:success] = t('experiments.create.success_flash',
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experiment: @experiment.name)
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respond_to do |format|
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format.json do
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render json: { path: canvas_experiment_url(@experiment) }, status: :ok
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end
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end
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else
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respond_to do |format|
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format.json do
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render json: @experiment.errors, status: :unprocessable_entity
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end
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end
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end
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end
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def canvas
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@project = @experiment.project
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@active_modules = @experiment.active_modules
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.includes(:tags, :inputs, :outputs)
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current_team_switch(@project.team)
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end
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def edit
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respond_to do |format|
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format.json do
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render json: {
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html: render_to_string(
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partial: 'edit_modal.html.erb'
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)
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}
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end
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end
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end
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def update
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render_403 && return unless if experiment_params[:archived] == 'false'
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can_restore_experiment?(@experiment)
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else
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can_manage_experiment?(@experiment)
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end
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old_text = @experiment.description
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@experiment.update(experiment_params)
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@experiment.last_modified_by = current_user
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if @experiment.save
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experiment_annotation_notification(old_text)
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activity_type = if experiment_params[:archived] == 'false'
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:restore_experiment
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else
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:edit_experiment
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end
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log_activity(activity_type)
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respond_to do |format|
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format.json do
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render json: {}, status: :ok
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end
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format.html do
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flash[:success] = t('experiments.update.success_flash',
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experiment: @experiment.name)
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redirect_to project_path(@experiment.project)
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end
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end
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else
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respond_to do |format|
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format.json do
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render json: @experiment.errors, status: :unprocessable_entity
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end
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format.html do
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flash[:alert] = t('experiments.update.error_flash')
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redirect_back(fallback_location: root_path)
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end
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end
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end
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end
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def archive
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@experiment.archived = true
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@experiment.archived_by = current_user
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@experiment.archived_on = DateTime.now
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if @experiment.save
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log_activity(:archive_experiment)
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flash[:success] = t('experiments.archive.success_flash',
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experiment: @experiment.name)
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redirect_to project_path(@experiment.project)
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else
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flash[:alert] = t('experiments.archive.error_flash')
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redirect_back(fallback_location: root_path)
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end
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end
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# GET: clone_modal_experiment_path(id)
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def clone_modal
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@projects = @experiment.projects_with_role_above_user(current_user)
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respond_to do |format|
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format.json do
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render json: {
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html: render_to_string(
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partial: 'clone_modal.html.erb'
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)
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}
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end
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end
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end
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# POST: clone_experiment(id)
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def clone
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service = Experiments::CopyExperimentAsTemplateService
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.call(experiment_id: @experiment.id,
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project_id: move_experiment_param,
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user_id: current_user.id)
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if service.succeed?
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flash[:success] = t('experiments.clone.success_flash',
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experiment: @experiment.name)
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redirect_to canvas_experiment_path(service.cloned_experiment)
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else
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flash[:error] = t('experiments.clone.error_flash',
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experiment: @experiment.name)
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redirect_to project_path(@experiment.project)
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end
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end
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# GET: move_modal_experiment_path(id)
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def move_modal
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@projects = @experiment.moveable_projects(current_user)
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respond_to do |format|
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format.json do
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render json: {
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html: render_to_string(
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partial: 'move_modal.html.erb'
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)
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}
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end
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end
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end
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# POST: move_experiment(id)
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def move
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service = Experiments::MoveToProjectService
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.call(experiment_id: @experiment.id,
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project_id: move_experiment_param,
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user_id: current_user.id)
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if service.succeed?
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flash[:success] = t('experiments.move.success_flash',
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experiment: @experiment.name)
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path = canvas_experiment_url(@experiment)
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status = :ok
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else
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message = t('experiments.move.error_flash',
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experiment: escape_input(@experiment.name))
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status = :unprocessable_entity
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end
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render json: { message: message, path: path }, status: status
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end
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def module_archive
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end
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def samples
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@samples_index_link = samples_index_experiment_path(@experiment,
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format: :json)
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@team = @experiment.project.team
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end
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def samples_index
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@team = @experiment.project.team
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respond_to do |format|
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format.html
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format.json do
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render json: ::SampleDatatable.new(view_context,
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@team,
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nil,
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nil,
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@experiment,
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current_user)
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end
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end
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end
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def updated_img
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if @experiment.workflowimg.attached? && !@experiment.workflowimg_exists?
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@experiment.workflowimg.purge
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@experiment.generate_workflow_img
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end
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respond_to do |format|
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format.json do
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if @experiment.workflowimg.attached?
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render json: {}, status: 200
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else
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render json: {}, status: 404
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end
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end
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end
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end
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def fetch_workflow_img
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respond_to do |format|
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format.json do
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render json: {
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workflowimg: render_to_string(
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partial: 'projects/show/workflow_img.html.erb'
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)
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}
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end
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end
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end
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private
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def set_experiment
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@experiment = Experiment.find_by_id(params[:id])
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render_404 unless @experiment
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end
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def set_project
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@project = Project.find_by_id(params[:project_id]) || @experiment.project
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render_404 unless @project
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end
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def experiment_params
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params.require(:experiment).permit(:name, :description, :archived)
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end
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def move_experiment_param
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params.require(:experiment).require(:project_id)
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end
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def load_projects_tree
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# Switch to correct team
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current_team_switch(@experiment.project.team) unless @experiment.project.nil?
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@projects_tree = current_user.projects_tree(current_team, nil)
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end
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def check_view_permissions
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render_403 unless can_read_experiment?(@experiment)
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end
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def check_manage_permissions
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render_403 unless can_manage_experiment?(@experiment)
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end
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def check_archive_permissions
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render_403 unless can_archive_experiment?(@experiment)
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end
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def check_clone_permissions
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render_403 unless can_clone_experiment?(@experiment)
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end
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def check_move_permissions
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render_403 unless can_move_experiment?(@experiment)
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end
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def set_inline_name_editing
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return unless can_manage_experiment?(@experiment)
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@inline_editable_title_config = {
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name: 'title',
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params_group: 'experiment',
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item_id: @experiment.id,
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field_to_udpate: 'name',
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path_to_update: experiment_path(@experiment)
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}
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end
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def experiment_annotation_notification(old_text = nil)
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smart_annotation_notification(
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old_text: old_text,
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new_text: @experiment.description,
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title: t('notifications.experiment_annotation_title',
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experiment: @experiment.name,
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user: current_user.full_name),
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message: t('notifications.experiment_annotation_message_html',
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project: link_to(@experiment.project.name,
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project_url(@experiment.project)),
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experiment: link_to(@experiment.name,
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canvas_experiment_url(@experiment)))
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)
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end
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def log_activity(type_of)
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Activities::CreateActivityService
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.call(activity_type: type_of,
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owner: current_user,
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team: @experiment.project.team,
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project: @experiment.project,
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subject: @experiment,
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message_items: { experiment: @experiment.id })
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end
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end
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