mirror of
https://github.com/scinote-eln/scinote-web.git
synced 2024-09-28 19:06:18 +08:00
81a9a7225b
* Add initial implementation of inventory stock management [SCI-6402]
* Add stock column type (#3786)
* Add stock column type
* Create new stock column [SCI-6410]
* Small fixed for stock column [SCI-6410]
* Add stock column validations [SCI-6410]
Co-authored-by: Anton <anton@scinote.net>
* Add stock table renders [SCI-6412] (#3787)
Co-authored-by: Anton <anton@scinote.net>
* Implemented stock management modal [SCI-6417] (#3788)
* Implement inventory stock management modal [SCI-6417]
* Add generalized validation mechanic, some bugfixes [SCI-6417]
* Fix permission check and method name in RepositoryStockValue [SCI-6417]
* Add stock and consumption to assigned items section [SCI-6434] (#3793)
* Added UPDATE_STOCK_CONSUMPTION to MyModule permissons [SCI-6418] (#3781)
* Fix invalid return in reports jobs [SCI-6409] (#3777)
* Added UPDATE_STOCK_CONSUMPTION to MyModule permissons [SCI-6418]
* Add current/new amount section to stock [SCI-6416] (#3791)
Co-authored-by: Anton <anton@scinote.net>
* Task stock consumption modal[SCI-6444][SCI-6445] (#3798)
Add main logic for consumption on task [SCI-6444]
Co-authored-by: Anton <anton@scinote.net>
* Add stock management columns to snapshots [SCI-6448]
* Handle stock management in full table views [SCI-6440]
* Implement stock management activities [SCI-6452] (#3810)
* Implement stock management activities [SCI-6452]
* PR code fixes [SCI-6452]
* Implement import for repository stock values [SCI-6461] (#3818)
* Add permissions checking to assigned items view on tasks [SCI-6435] (#3801)
* Add front-end validation for comments field [SCI-6464] (#3829)
Co-authored-by: Anton <anton@scinote.net>
* Add stock consumption to pdf and docx [SCI-6460] (#3816)
Co-authored-by: Anton <anton@scinote.net>
* Add support of repository snapshots to assigned items section [SCI-6439] (#3828)
* Change subject of Repository (#3838)
* Fixed full view assigned items modal stock consumption (#3846)
* Implement repository snapshots displaying on assigned items full view modal [SCI-6442] (#3862)
* Implement low stock threshold column [SCI-6555] (#3907)
* Stock column fixes [SCI-6455] (#3878)
* Fix issues with stock column management [SCI-6455]
* Refactor stock column in datatables [SCI-6455]
* Fix tests [SCI-6486] (#3913)
* Fix tests [SCI-6486]
* Fix rspec tests [SCI-6486]
Co-authored-by: Anton <anton@scinote.net>
* Implement basic logic for Date/DateTime/Stock reminders [SCI-6554] (#3911)
* Implement basic logic for Date/DateTime/Stock reminders [SCI-6554]
* Implement bell icon [SCI-6500]
* Refactor reminder cells scope [SCI-6554]
* Add red dot for date/datetime reminder [SCI-6499] (#3924)
Co-authored-by: Anton <anton@scinote.net>
* Add reminders to stock modal [SCI-6557] (#3917)
Co-authored-by: Anton <anton@scinote.net>
* Add flyout for repository reminders [SCI-6501] (#3926)
Co-authored-by: Anton <anton@scinote.net>
* Fix moving experiment [SCI-6602] (#3927)
* Update Rails to 6.1.4.7 [SCI-6615] (#3928)
* Task inventory activity for assigned item consumption [SCI-6453] (#3830)
* Add task inventory activity [SCI-6453]
* Apply user's time zone in advanced filters for time data type [SCI-6585] (#3930)
* Bump version to 1.24.2
* Implement hidden repository cell reminders [SCI-6504] (#3933)
* Low stock flyout reminders [SCI-6502] (#3932)
* Display low stock flyout reminder [SCI-6502]
* Display low stock flyout reminder [SCI-6502]
* Adapt showing stock reminders for every bell icon click [SCI-6502]
* Correct hound error [SCI-6502]
* Fix event registration for fetching reminder data [SCI-6502]
* Fix event registration for fetching reminder data [SCI-6502]
* Fix hound [SCI-6502]
* Remove not needed line [SCI-6502]
* Add reminder template [SCI-6502]
* Add clearing messages [SCI-6502]
* Displaying low stock warning [SCI-6497] (#3912)
* Low stock warning [SCI-6497
* Fix some bugs [SCI-6497]
* Fix to long line [SCI-6497]
* Clean not needed information in renderes [SCI-6497]
* Icon bell reminder for an assigned item on the task [SCI-6506] (#3929)
* Add bell icon on assigned task [SCI-6506]
* Add flyout and improve quering [SCI-6506]
* Refactor repository toolbar [SCI-6545] (#3943)
Co-authored-by: Anton <anton@scinote.net>
* Add datetime reminders to columns modal [SCI-6556] (#3934)
Co-authored-by: Anton <anton@scinote.net>
* Hide reminders for archived repositories [SCI-6609] (#3941)
* Hide reminders for archived repositories [SCI-6609]
* Always pass repository in datatable helper [SCI-6609]
* Handle locked stock consumption state [SCI-6608] (#3942)
* Change env variable name for s3 bucket region [SCI-6603] (#3944)
* Add last_transition_error column to tasks [SCI-6610] (#3949)
* Add microtransactions to stock consumptions [SCI-6626] (#3948)
Co-authored-by: Anton <anton@scinote.net>
* Date remidner flyout [SCI-6503] (#3937)
* Implement date reminder flyout [SCI-6503]
* Show only days left for date reminder [SCI-6503]
* Pluralize day in reminders [SCI-6503]
* Create partials for different reminders [SCI-6503]
* Unify css for reminder [SCI-6503]
* Add micro interactions for stock modal [SCI-6625] (#3947)
Co-authored-by: Anton <anton@scinote.net>
* Hide options to add New Tags for users without permissions on Task level [SCI-6573] (#3945)
* Bump lodash-es from 4.17.15 to 4.17.21 (#3939)
Bumps [lodash-es](https://github.com/lodash/lodash) from 4.17.15 to 4.17.21.
- [Release notes](https://github.com/lodash/lodash/releases)
- [Commits](https://github.com/lodash/lodash/compare/4.17.15...4.17.21)
---
updated-dependencies:
- dependency-name: lodash-es
dependency-type: indirect
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Implement clearing hidden repository reminders [SCI-6507] (#3936)
* Add stock filters [SCI-6547] (#3938)
Co-authored-by: Anton <anton@scinote.net>
* Fix assign view for task repository [SCI-6648] (#3954)
Co-authored-by: Anton <anton@scinote.net>
* Add micro-interactions to reminders flyout [SCI-6627] (#3951)
Co-authored-by: Anton <anton@scinote.net>
* Improve error reporting in task status transition [SCI-6611] (#3952)
* Add ordering to global search results [SCI-6639] (#3960)
* Fix multiple stock bugs [SCI-6651] (#3959)
Co-authored-by: Anton <anton@scinote.net>
* Fix large previews for csv files [SCI-6619] (#3961)
* Add alias to cell sort query, to prevent join conflicts [SCI-6649] (#3953)
* Add alias to cell sort query, to prevent join conflicts [SCI-6649]
* Added value_type to join condition to make use of DB index [SCI-6649]
* Update front end validation for columns managment [SCI-6657] (#3962)
Co-authored-by: Anton <anton@scinote.net>
* Print protocol smart annotation and table improvements [SCI-6566] (#3925)
* Improve table printing in the print menu [SCI-6566]
* Open smart annotation in new tab for print view [SCI-6566]
* Unify naming of same parameter [SCI-6566]
* Fix typo [SCI-6566]
* Fix hound errors [SCI-6566]
* Add stock management toggling [SCI-6653] (#3967)
Co-authored-by: Anton <anton@scinote.net>
* Fix caching of an experiment card dropdown [SCI-6606] (#3963)
* Add stock consumption permission to user roles [SCI-6665] (#3966)
* Show archive icon only on archived projects in the header [SCI-6617] (#3965)
* Fix assigned items fullview modal [SCI-6664] (#3968)
* Implement hide all repository reminders button [SCI-6505] (#3940)
* Viewer role does not see any tasks in archived project [SCI-6616] (#3958)
* Fix viewer role not see any tasks in archived project [SCI-6616]
* Fix rollback for add read archive permission migration [SCI-6616]
* Stock modal bugs [SCI-6667] (#3970)
Co-authored-by: Anton <anton@scinote.net>
* Always use Tika text extractor in server mode [SCI-6658] (#3957)
* Implement stock consumption via the API [SCI-6642] (#3964)
* Implement stock consumption via the API [SCI-6642]
* Remove unnecessary attribute from InventoryItemSerializer [SCI-6642]
* Amend permission check, add nested transaction support to consume_stock method [SCI-6642]
* Toolbar fixes [SCI-6670] (#3973)
Co-authored-by: Anton <anton@scinote.net>
* Make stock column work properly with different orders [SCI-6677] (#3974)
* Fix filters loading for stock filter [SCI-6687] (#3975)
Co-authored-by: Anton <anton@scinote.net>
* Hide reminders and disable stock consumption for archived items [SCI-6689] (#3978)
* Fix red dot for datetime columns [SCI-6684] (#3977)
Co-authored-by: Anton <anton@scinote.net>
* Fix saving of inventory date time reminders saving [SCI-6672] (#3976)
* Bump puma from 5.6.2 to 5.6.4 (#3972)
Bumps [puma](https://github.com/puma/puma) from 5.6.2 to 5.6.4.
- [Release notes](https://github.com/puma/puma/releases)
- [Changelog](https://github.com/puma/puma/blob/master/History.md)
- [Commits](https://github.com/puma/puma/compare/v5.6.2...v5.6.4)
---
updated-dependencies:
- dependency-name: puma
dependency-type: direct:production
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Don't load reminders if the stock feature is disabled [SCI-6673] (#3981)
* Don't load reminders if the stock feature is disabled [SCI-6673]
* Don't load reminders if the stock feature is disabled [SCI-6673]
* Unify stock management enabled check [6673]
* Update repository card view for stock [SCI-6685] (#3982)
Co-authored-by: Anton <anton@scinote.net>
* Disable stock managememnt for all tables in my module context [SCI-6692] (#3983)
* Implement failed snapshot pop-up on task screen [SCI-6612] (#3950)
* Implement failed snapshot pop-up on task screen [SCI-6612]
* Copy change [SCI-6612]
* Proper handling of snapshot transition error [SCI-6612]
* Move modal auto open logic to JS file [SCI-6612]
* Remove unnecessary .html_safe [SCI-6612]
* Fix assigning and consuming items [SCI-6686] (#3985)
* Repository toolbar CSS fixes [SCI-6676] (#3984)
Co-authored-by: Anton <anton@scinote.net>
* Add basic validation to reminder value to prevent integer overflow errors [SCI-6693] (#3986)
* Fix reminder dropdown on task screen [SCI-6678] (#3987)
Co-authored-by: Anton <anton@scinote.net>
* Fix inventory sorting with date time reminders [SCI-6683] (#3980)
* Fix css stock modal [SCI-6675] (#3989)
Co-authored-by: Anton <anton@scinote.net>
* Stock column management UX/UI fixes [SCI-6674] (#3979)
* Fix red dot for dates in repository [SCI-6696] (#3991)
Co-authored-by: Anton <anton@scinote.net>
* Added styling for failed snapshots in sidebar [SCI-6636] (#3990)
* Added styling for failed snapshots in sidebar [SCI-6636]
* Simplify markup for failed icon [SCI-6636]
* Turn off autocomplete for stock amount/reminder [SCI-6694] (#3988)
* Override error styling in stock column management [SCI-6674] (#3995)
* Fix repository full view tables without stock management [SCI-6703] (#3994)
* Add pagination to projects list [SCI-6655]
* Add reminder preset to date(time) reminders [SCI-6693] (#3996)
* Fix color on consumption link [SCI-6686] (#3992)
* Fix sorting by date time columns in inventories [SCI-6683] (#4002)
* Improve loading of the dashboard [SCI-6618] (#4001)
* Stock modal UX fixes [SCI-6714] (#3998)
Co-authored-by: Anton <anton@scinote.net>
* Fix css for stotck modal [SCI-6698] (#3999)
Co-authored-by: Anton <anton@scinote.net>
* API: add endpoint for updating of stock [SCI-6549] (#3955)
* Add test for Stock repository cell [SCI-6549]
* Create and update stock inventory cell [SCI-6549]
* Fix hound errors [SCI-6549]
* Fix ledger recording [SCI-6549]
* Fix api endpoint [SCI-6549]
* Fix hound [SCI-6549]
* Fix collapsing of assigned items tables [SCI-6705] (#4000)
* API: add endpoint for creating stock column [SCI-6550] (#3956)
* Add test for repositoty stock column api [SCI-6550]
* Create and update stock column [SCI-6550]
* Change stock unit [SCI-6550]
* Fix hound [SCI-6550]
* Fix on delete [SCI-6550]
* Fix houd [SCI-6550]
* Removed autofocus clear on open reminder flyout [SCI-6690] (#4003)
* Removed clear autofocus on open reminder flyout [SCI-6690]
* Fix hound [SCI-6690]
* Adding/changing stock consumption [SCI-6708] (#4005)
* Adding/changing stock consumption [SCI-6708]
* Fix hound [SCI-6708]
* Remove date red dots for snapshots [SCI-6715] (#4004)
Co-authored-by: Anton <anton@scinote.net>
* Add snapshot error message below task status [SCI-6614] (#4009)
* Add repository snapshot error modal [SCI-6613] (#3993)
* Bump nokogiri from 1.13.3 to 1.13.4 (#4008)
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.13.3 to 1.13.4.
- [Release notes](https://github.com/sparklemotion/nokogiri/releases)
- [Changelog](https://github.com/sparklemotion/nokogiri/blob/v1.13.4/CHANGELOG.md)
- [Commits](https://github.com/sparklemotion/nokogiri/compare/v1.13.3...v1.13.4)
---
updated-dependencies:
- dependency-name: nokogiri
dependency-type: direct:production
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Add pagination for experiments [SCI-6656]
* Fix sorting by time and time range columns [SCI-6683] (#4011)
* Bump moment from 2.24.0 to 2.29.2 (#4006)
Bumps [moment](https://github.com/moment/moment) from 2.24.0 to 2.29.2.
- [Release notes](https://github.com/moment/moment/releases)
- [Changelog](https://github.com/moment/moment/blob/develop/CHANGELOG.md)
- [Commits](https://github.com/moment/moment/compare/2.24.0...2.29.2)
---
updated-dependencies:
- dependency-name: moment
dependency-type: direct:production
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Align items in assigned item section [SCI-6707] (#4007)
* Add locking and unique index to repository row assigning [SCI-6591] (#3921)
* tmp (#3935)
* Revert "tmp (#3935)" (#4014)
This reverts commit 043086d55f
.
* Move cursor to end of value when focusing consumption amount [SCI-6727] (#4013)
* Fix removing stock reminder threshold [SCI-6724] (#4010)
* Stock small ux fixes [SCI-6714] (#4015)
Co-authored-by: Anton <anton@scinote.net>
* Add aibility to delete stock column [SCI-6723] (#4017)
Co-authored-by: Anton <anton@scinote.net>
* Fix red dot for date reminders [SCI-6696] (#4016)
Co-authored-by: Anton <anton@scinote.net>
* Change the way setting stock works [SCI-6730] (#4018)
* Fix error modal opening on successful snapshot [SCI-6726] (#4019)
* Refactor and fix display of stock warnings and stock consumption [SCI-6734] (#4021)
* Refactor and fix how stock consumption is displayed [SCI-6734]
* Refactor and fix display of stock warnings [SCI-6734]
* Fix stock consumption in reports [SCI-6735]
* Fix markup
* Focus authenticator code field [SCI-6716] (#4022)
* Hide reminders settings and red dots if stock is disabled [SCI-6673] (#4024)
* Fix decimals in stock consumption modal [SCI-6732]
* Add edit title for stock consumption modal [SCI-6731]
* Highlight negative stock in modal with red [SCI-6729]
* Stock management test [SCI-6420] (#3946)
* Initial test for stock management
* Repository stock values adding [does not work] SCI-6420
* Fix typos SCI-6420
* Fix test [SCI-6420]
* Test changes [SCI-6402]
* Remove locking test [SCI-6420]
* Remove lock [SCI-6420]
* Remove serializer [SCI-6420]
* Fix stock test and add ledger creation on consume [SCI-6420]
* Fix inviting users to team [SCI-6725] (#4026)
* Improve stock ledger records creation [SCI-6419]
* Fix stock modal add/remove value preset value [SCI-6740]
* API GET repository stock column output fix [SCI-6550] (#4030)
* Add include stock unit items to Stock column get [SCI-6550]
* Fix stock column test [SCI-6550]
* Fix hound [SCI-6550]
* Move list-type column includes to param, unify naming [SCI-6738] (#4036)
* Add default includes for inventory columns with lists [SCI-6738]
* Move list-type column includes to param, unify naming [SCI-6738]
* Fix snapshot consumption display [SCI-6734] (#4035)
* Fix decimal render function [SCI-6742] (#4037)
Co-authored-by: Anton <anton@scinote.net>
* Add comment to repository stock activities [SCI-6746]
* Fix default stock column default units selection [SCI-6744]
* Add negative validation for stock [SCI-6743]
* Highlight negative value in consumption modal [SCI-6741]
* Fix snapshot creation with stock consumption [SCI-6762]
* Update stock value without reloading the table [SCI-6745] (#4041)
* Allow tag creation on task level if you have permission [SCI-6573] (#4031)
* Enable team normal user to edit repository files [SCI-6765] (#4049)
* Add negative validation for treshold [SCI-6743]
* Copy fix [SCI-6762] (#4048)
* Add bell icon for negative stock [SCI-6770]
* Fix formatting of stock consumption on tasks [SCI-6737] (#4050)
* Fix duplicated inventories on tasks for export all [SCI-6776]
* Stock / stock consumption display fixes [SCI-6771] (#4054)
* Fix blank stock consumption representation in reports [SCI-6769]
* Upgrade Rails to 6.1.5.1
* Show last page message only after second page [SCI-6761]
* Small CSS fixes for repository [SCI-6767]
* Added validations for date(time) column reminder [SCI-6775] (#4063)
* Upgrade Ruby to 2.7.6
* Open repository on print view [SCI-6566] (#4055)
* Fix saving of new date time columns with reminders [SCI-6774] (#4068)
* Improve input field for adding new team [SCI-6155]
* Allow deleteion of stock columns when stock management is disabled [SCI-6800]
* Update default label template [SCI-6763] (#4064)
* Stock editing and reminder fixes [SCI-6803] (#4078)
* Fix stock editing after adding new value [SCI-6803]
* Don't load reminders for snapshots [SCI-6803]
* Improve loading time of canvas view/edit [SCI-6797]
* Fix stock consumption rounding [SCI-6807]
* Fix displaying of stock consumption units [SCI-6795]
* Fix task dropdown actions [SCI-6817]
* Fix archived tasks view [SCI-6822]
* Fix display of repository snapshot with stock consumption [SCI-6824]
* Fix duplicated counters on task card [SCI-6825]
* Bump version to 1.25.0
Co-authored-by: Oleksii Kriuchykhin <okriuchykhin@biosistemika.com>
Co-authored-by: aignatov-bio <47317017+aignatov-bio@users.noreply.github.com>
Co-authored-by: Anton <anton@scinote.net>
Co-authored-by: ajugo <andrej.jugovic7@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
730 lines
24 KiB
Ruby
730 lines
24 KiB
Ruby
# frozen_string_literal: true
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class User < ApplicationRecord
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include SearchableModel
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include SettingsModel
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include VariablesModel
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include User::TeamRoles
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include TeamBySubjectModel
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include InputSanitizeHelper
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include ActiveStorageConcerns
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devise :invitable, :confirmable, :database_authenticatable, :registerable,
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:async, :recoverable, :rememberable, :trackable, :validatable,
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:timeoutable, :omniauthable, :lockable,
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omniauth_providers: Extends::OMNIAUTH_PROVIDERS,
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stretches: Constants::PASSWORD_STRETCH_FACTOR
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has_one_attached :avatar
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auto_strip_attributes :full_name, :initials, nullify: false
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validates :full_name,
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presence: true,
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length: { maximum: Constants::NAME_MAX_LENGTH }
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validates :initials,
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presence: true,
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length: { maximum: Constants::USER_INITIALS_MAX_LENGTH }
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validates :email,
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presence: true,
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length: { maximum: Constants::EMAIL_MAX_LENGTH }
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validate :time_zone_check
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validates :external_id, length: { maximum: Constants::EMAIL_MAX_LENGTH }
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store_accessor :settings, :time_zone, :notifications_settings, :external_id
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DEFAULT_SETTINGS = {
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time_zone: 'UTC',
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date_format: Constants::DEFAULT_DATE_FORMAT,
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notifications_settings: {
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assignments: true,
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assignments_email: false,
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recent: true,
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recent_email: false,
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system_message_email: false
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}
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}.freeze
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DEFAULT_OTP_DRIFT_TIME_SECONDS = 10
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store_accessor :variables, :export_vars
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default_variables(
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export_vars: {
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num_of_export_all_last_24_hours: 0,
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last_export_timestamp: Time.now.utc.beginning_of_day.to_i
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}
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)
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# Relations
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has_many :user_identities, inverse_of: :user
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has_many :user_teams, inverse_of: :user
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has_many :teams, through: :user_teams
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has_many :user_assignments, dependent: :destroy
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has_many :user_projects, inverse_of: :user
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has_many :projects, through: :user_assignments, source: :assignable, source_type: 'Project'
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has_many :user_my_modules, inverse_of: :user
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has_many :my_modules, through: :user_assignments, source: :assignable, source_type: 'MyModule'
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has_many :comments, inverse_of: :user
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has_many :activities, inverse_of: :owner, foreign_key: 'owner_id'
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has_many :results, inverse_of: :user
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has_many :repositories, inverse_of: :user
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has_many :repository_table_states, inverse_of: :user, dependent: :destroy
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has_many :repository_table_filters, foreign_key: 'created_by_id', inverse_of: :created_by, dependent: :nullify
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has_many :steps, inverse_of: :user
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has_many :reports, inverse_of: :user
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has_many :created_assets, class_name: 'Asset', foreign_key: 'created_by_id'
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has_many :modified_assets,
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class_name: 'Asset',
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foreign_key: 'last_modified_by_id'
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has_many :created_checklists,
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class_name: 'Checklist',
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foreign_key: 'created_by_id'
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has_many :modified_checklists,
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class_name: 'Checklist',
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|
foreign_key: 'last_modified_by_id'
|
|
has_many :created_checklist_items,
|
|
class_name: 'ChecklistItem',
|
|
foreign_key: 'created_by_id'
|
|
has_many :modified_checklist_items,
|
|
class_name: 'ChecklistItem',
|
|
foreign_key: 'last_modified_by_id'
|
|
has_many :modified_comments,
|
|
class_name: 'Comment',
|
|
foreign_key: 'last_modified_by_id'
|
|
has_many :created_my_module_groups,
|
|
class_name: 'MyModuleGroup',
|
|
foreign_key: 'created_by_id'
|
|
has_many :created_my_module_tags,
|
|
class_name: 'MyModuleTag',
|
|
foreign_key: 'created_by_id'
|
|
has_many :created_my_modules,
|
|
class_name: 'MyModule',
|
|
foreign_key: 'created_by_id'
|
|
has_many :modified_my_modules,
|
|
class_name: 'MyModule',
|
|
foreign_key: 'last_modified_by_id'
|
|
has_many :archived_my_modules,
|
|
class_name: 'MyModule',
|
|
foreign_key: 'archived_by_id'
|
|
has_many :restored_my_modules,
|
|
class_name: 'MyModule',
|
|
foreign_key: 'restored_by_id'
|
|
has_many :created_teams,
|
|
class_name: 'Team',
|
|
foreign_key: 'created_by_id'
|
|
has_many :modified_teams,
|
|
class_name: 'Team',
|
|
foreign_key: 'last_modified_by_id'
|
|
has_many :created_projects,
|
|
class_name: 'Project',
|
|
foreign_key: 'created_by_id'
|
|
has_many :modified_projects,
|
|
class_name: 'Project',
|
|
foreign_key: 'last_modified_by_id'
|
|
has_many :archived_projects,
|
|
class_name: 'Project',
|
|
foreign_key: 'archived_by_id'
|
|
has_many :restored_projects,
|
|
class_name: 'Project',
|
|
foreign_key: 'restored_by_id'
|
|
has_many :archived_project_folders,
|
|
class_name: 'ProjectFolder',
|
|
foreign_key: 'archived_by_id',
|
|
inverse_of: :arhived_by
|
|
has_many :restored_project_folders,
|
|
class_name: 'ProjectFolder',
|
|
foreign_key: 'restored_by_id',
|
|
inverse_of: :restored_by
|
|
has_many :modified_reports,
|
|
class_name: 'Report',
|
|
foreign_key: 'last_modified_by_id'
|
|
has_many :modified_results,
|
|
class_name: 'Result',
|
|
foreign_key: 'modified_by_id'
|
|
has_many :archived_results,
|
|
class_name: 'Result',
|
|
foreign_key: 'archived_by_id'
|
|
has_many :restored_results,
|
|
class_name: 'Result',
|
|
foreign_key: 'restored_by_id'
|
|
has_many :modified_steps, class_name: 'Step', foreign_key: 'modified_by_id'
|
|
has_many :created_tables, class_name: 'Table', foreign_key: 'created_by_id'
|
|
has_many :modified_tables,
|
|
class_name: 'Table',
|
|
foreign_key: 'last_modified_by_id'
|
|
has_many :created_tags, class_name: 'Tag', foreign_key: 'created_by_id'
|
|
|
|
has_many :tokens,
|
|
class_name: 'Token',
|
|
foreign_key: 'user_id',
|
|
inverse_of: :user
|
|
|
|
has_many :modified_tags,
|
|
class_name: 'Tag',
|
|
foreign_key: 'last_modified_by_id'
|
|
has_many :assigned_user_my_modules,
|
|
class_name: 'UserMyModule',
|
|
foreign_key: 'assigned_by_id'
|
|
has_many :assigned_user_teams,
|
|
class_name: 'UserTeam',
|
|
foreign_key: 'assigned_by_id'
|
|
has_many :assigned_user_projects,
|
|
class_name: 'UserProject',
|
|
foreign_key: 'assigned_by_id'
|
|
has_many :added_protocols,
|
|
class_name: 'Protocol',
|
|
foreign_key: 'added_by_id',
|
|
inverse_of: :added_by
|
|
has_many :archived_protocols,
|
|
class_name: 'Protocol',
|
|
foreign_key: 'archived_by_id',
|
|
inverse_of: :archived_by
|
|
has_many :restored_protocols,
|
|
class_name: 'Protocol',
|
|
foreign_key: 'restored_by_id',
|
|
inverse_of: :restored_by
|
|
has_many :archived_repositories,
|
|
class_name: 'Repository',
|
|
foreign_key: 'archived_by_id',
|
|
inverse_of: :archived_by,
|
|
dependent: :nullify
|
|
has_many :restored_repositories,
|
|
class_name: 'Repository',
|
|
foreign_key: 'restored_by_id',
|
|
inverse_of: :restored_by,
|
|
dependent: :nullify
|
|
has_many :created_repository_rows,
|
|
class_name: 'RepositoryRow',
|
|
foreign_key: 'created_by_id',
|
|
inverse_of: :created_by,
|
|
dependent: :nullify
|
|
has_many :archived_repository_rows,
|
|
class_name: 'RepositoryRow',
|
|
foreign_key: 'archived_by_id',
|
|
inverse_of: :archived_by,
|
|
dependent: :nullify
|
|
has_many :restored_repository_rows,
|
|
class_name: 'RepositoryRow',
|
|
foreign_key: 'restored_by_id',
|
|
inverse_of: :restored_by,
|
|
dependent: :nullify
|
|
has_many :assigned_my_module_repository_rows,
|
|
class_name: 'MyModuleRepositoryRow',
|
|
foreign_key: 'assigned_by_id'
|
|
has_many :created_repository_status_types,
|
|
class_name: 'RepositoryStatusItem',
|
|
foreign_key: 'created_by_id',
|
|
inverse_of: :created_by,
|
|
dependent: :nullify
|
|
has_many :modified_repository_status_types,
|
|
class_name: 'RepositoryStatusItem',
|
|
foreign_key: 'last_modified_by_id',
|
|
inverse_of: :last_modified_by,
|
|
dependent: :nullify
|
|
has_many :created_repository_status_value,
|
|
class_name: 'RepositoryStatusValue',
|
|
foreign_key: 'created_by_id',
|
|
inverse_of: :created_by,
|
|
dependent: :nullify
|
|
has_many :modified_repository_status_value,
|
|
class_name: 'RepositoryStatusValue',
|
|
foreign_key: 'last_modified_by_id',
|
|
inverse_of: :last_modified_by,
|
|
dependent: :nullify
|
|
has_many :created_repository_date_time_values,
|
|
class_name: 'RepositoryDateTimeValue',
|
|
foreign_key: 'created_by_id',
|
|
inverse_of: :created_by,
|
|
dependent: :nullify
|
|
has_many :modified_repository_date_time_values,
|
|
class_name: 'RepositoryDateTimeValue',
|
|
foreign_key: 'last_modified_by_id',
|
|
inverse_of: :last_modified_by,
|
|
dependent: :nullify
|
|
has_many :created_repository_checklist_values,
|
|
class_name: 'RepositoryChecklistValue',
|
|
foreign_key: 'created_by_id',
|
|
inverse_of: :created_by,
|
|
dependent: :nullify
|
|
has_many :modified_repository_checklist_values,
|
|
class_name: 'RepositoryChecklistValue',
|
|
foreign_key: 'last_modified_by_id',
|
|
inverse_of: :last_modified_by,
|
|
dependent: :nullify
|
|
has_many :created_repository_stock_value,
|
|
class_name: 'RepositoryStockValue',
|
|
foreign_key: 'created_by_id',
|
|
inverse_of: :created_by,
|
|
dependent: :nullify
|
|
has_many :modified_repository_stock_value,
|
|
class_name: 'RepositoryStockValue',
|
|
foreign_key: 'created_by_id',
|
|
inverse_of: :last_modified_by,
|
|
dependent: :nullify
|
|
has_many :created_repository_checklist_types,
|
|
class_name: 'RepositoryChecklistItem',
|
|
foreign_key: 'created_by_id',
|
|
inverse_of: :created_by,
|
|
dependent: :nullify
|
|
has_many :modified_repository_checklist_types,
|
|
class_name: 'RepositoryChecklistItem',
|
|
foreign_key: 'last_modified_by_id',
|
|
inverse_of: :last_modified_by,
|
|
dependent: :nullify
|
|
has_many :created_repository_number_values,
|
|
class_name: 'RepositoryNumberValue',
|
|
foreign_key: 'created_by_id',
|
|
inverse_of: :created_by,
|
|
dependent: :nullify
|
|
has_many :modified_repository_number_values,
|
|
class_name: 'RepositoryNumberValue',
|
|
foreign_key: 'last_modified_by_id',
|
|
inverse_of: :last_modified_by,
|
|
dependent: :nullify
|
|
has_many :created_repository_text_values,
|
|
class_name: 'RepositoryTextValue',
|
|
foreign_key: 'created_by_id',
|
|
inverse_of: :created_by,
|
|
dependent: :nullify
|
|
has_many :modified_repository_text_values,
|
|
class_name: 'RepositoryTextValue',
|
|
foreign_key: 'last_modified_by_id',
|
|
inverse_of: :last_modified_by,
|
|
dependent: :nullify
|
|
has_many :created_repository_stock_values,
|
|
class_name: 'RepositoryStockValue',
|
|
foreign_key: 'created_by_id',
|
|
inverse_of: :created_by,
|
|
dependent: :nullify
|
|
has_many :modified_repository_stock_values,
|
|
class_name: 'RepositoryStockValue',
|
|
foreign_key: 'last_modified_by_id',
|
|
inverse_of: :last_modified_by,
|
|
dependent: :nullify
|
|
|
|
has_many :user_notifications, inverse_of: :user
|
|
has_many :notifications, through: :user_notifications
|
|
has_many :user_system_notifications, dependent: :destroy
|
|
has_many :system_notifications, through: :user_system_notifications
|
|
has_many :zip_exports, inverse_of: :user, dependent: :destroy
|
|
has_many :datatables_teams, class_name: '::Views::Datatables::DatatablesTeam'
|
|
has_many :view_states, dependent: :destroy
|
|
|
|
has_many :access_grants, class_name: 'Doorkeeper::AccessGrant',
|
|
foreign_key: :resource_owner_id,
|
|
dependent: :delete_all
|
|
has_many :access_tokens, class_name: 'Doorkeeper::AccessToken',
|
|
foreign_key: :resource_owner_id,
|
|
dependent: :delete_all
|
|
|
|
has_many :hidden_repository_cell_reminders, dependent: :destroy
|
|
|
|
before_validation :downcase_email!
|
|
before_destroy :destroy_notifications
|
|
|
|
def name
|
|
full_name
|
|
end
|
|
|
|
def name=(name)
|
|
self.full_name = name
|
|
end
|
|
|
|
def avatar_remote_url=(url_value)
|
|
self.avatar = URI.parse(url_value)
|
|
# Assuming url_value is http://example.com/photos/face.png
|
|
# avatar.filename == "face.png"
|
|
# avatar.content_type == "image/png"
|
|
@avatar_remote_url = url_value
|
|
end
|
|
|
|
def avatar_variant(style)
|
|
return Constants::DEFAULT_AVATAR_URL.gsub(':style', style.to_s) unless avatar.attached?
|
|
|
|
format = case style.to_sym
|
|
when :medium
|
|
Constants::MEDIUM_PIC_FORMAT
|
|
when :thumb
|
|
Constants::THUMB_PIC_FORMAT
|
|
when :icon
|
|
Constants::ICON_PIC_FORMAT
|
|
when :icon_small
|
|
Constants::ICON_SMALL_PIC_FORMAT
|
|
else
|
|
Constants::ICON_SMALL_PIC_FORMAT
|
|
end
|
|
avatar.variant(resize_to_limit: format)
|
|
end
|
|
|
|
def avatar_url(style)
|
|
Rails.application.routes.url_helpers.url_for(avatar_variant(style))
|
|
end
|
|
|
|
def date_format
|
|
settings[:date_format] || Constants::DEFAULT_DATE_FORMAT
|
|
end
|
|
|
|
def date_format=(date_format)
|
|
return if settings[:date_format] == date_format
|
|
if Constants::SUPPORTED_DATE_FORMATS.include?(date_format)
|
|
settings[:date_format] = date_format
|
|
clear_view_cache
|
|
end
|
|
end
|
|
|
|
def current_team
|
|
Team.find_by_id(self.current_team_id)
|
|
end
|
|
|
|
def self.from_omniauth(auth)
|
|
includes(:user_identities)
|
|
.where(
|
|
'user_identities.provider=? AND user_identities.uid=?',
|
|
auth.provider,
|
|
auth.uid
|
|
)
|
|
.references(:user_identities)
|
|
.take
|
|
end
|
|
|
|
# Search all active users for username & email. Can
|
|
# also specify which team to ignore.
|
|
def self.search(
|
|
active_only,
|
|
query = nil,
|
|
team_to_ignore = nil
|
|
)
|
|
result = User.all
|
|
result = result.where.not(confirmed_at: nil) if active_only
|
|
|
|
if team_to_ignore.present?
|
|
ignored_ids = UserTeam.select(:user_id).where(team_id: team_to_ignore.id)
|
|
result = result.where.not(users: { id: ignored_ids })
|
|
end
|
|
|
|
result.where_attributes_like(%i(full_name email), query).distinct
|
|
end
|
|
|
|
# Whether user is active (= confirmed) or not
|
|
def active?
|
|
confirmed_at.present?
|
|
end
|
|
|
|
def active_status_str
|
|
if active?
|
|
I18n.t('users.enums.status.active')
|
|
else
|
|
I18n.t('users.enums.status.pending')
|
|
end
|
|
end
|
|
|
|
def projects_by_teams(team_id = 0, sort_by = nil, archived = false)
|
|
archived = archived ? true : false
|
|
query = Project.all.joins(:user_projects)
|
|
sql = 'projects.team_id IN (SELECT DISTINCT team_id ' \
|
|
'FROM user_teams WHERE user_teams.user_id = :user_id)'
|
|
if team_id.zero? || !user_teams.find_by(team_id: team_id).try(:admin?)
|
|
# Admins see all projects of team
|
|
sql += ' AND (projects.visibility=1 OR user_projects.user_id=:user_id)'
|
|
end
|
|
sql += ' AND projects.archived = :archived '
|
|
|
|
sort =
|
|
case sort_by
|
|
when 'old'
|
|
{ created_at: :asc }
|
|
when 'atoz'
|
|
{ name: :asc }
|
|
when 'ztoa'
|
|
{ name: :desc }
|
|
else
|
|
{ created_at: :desc }
|
|
end
|
|
|
|
if team_id > 0
|
|
result = query
|
|
.where('projects.team_id = ?', team_id)
|
|
.where(sql, user_id: id, archived: archived)
|
|
.order(sort)
|
|
.distinct
|
|
.group_by(&:team)
|
|
else
|
|
result = query
|
|
.where(sql, user_id: id, archived: archived)
|
|
.order(sort)
|
|
.distinct
|
|
.group_by(&:team)
|
|
end
|
|
result || []
|
|
end
|
|
|
|
# Finds all activities of user that is assigned to project. If user
|
|
# is not an owner of the project, user must be also assigned to
|
|
# module.
|
|
def last_activities
|
|
Activity
|
|
.joins(project: :user_projects)
|
|
.joins(
|
|
'LEFT OUTER JOIN my_modules ON activities.my_module_id = my_modules.id'
|
|
)
|
|
.joins(
|
|
'LEFT OUTER JOIN user_my_modules ON my_modules.id = ' \
|
|
'user_my_modules.my_module_id'
|
|
)
|
|
.where(user_projects: { user_id: self })
|
|
.where(
|
|
'activities.my_module_id IS NULL OR ' \
|
|
'user_projects.role = 0 OR ' \
|
|
'user_my_modules.user_id = ?',
|
|
id
|
|
)
|
|
.order(created_at: :desc)
|
|
end
|
|
|
|
def self.find_by_valid_wopi_token(token)
|
|
Rails.logger.warn "WOPI: searching by token #{token}"
|
|
User
|
|
.joins('LEFT OUTER JOIN tokens ON user_id = users.id')
|
|
.where(tokens: { token: token })
|
|
.where('tokens.ttl = 0 OR tokens.ttl > ?', Time.now.to_i)
|
|
.first
|
|
end
|
|
|
|
def get_wopi_token
|
|
# WOPI does not have a good way to request a new token,
|
|
# so a new token should be provided each time this is called,
|
|
# while keeping any old tokens as long as they have not yet expired
|
|
tokens = Token.where(user_id: id).distinct
|
|
|
|
tokens.each do |token|
|
|
token.delete if token.ttl < Time.now.to_i
|
|
end
|
|
|
|
token_string = "#{Devise.friendly_token(20)}-#{id}"
|
|
# WOPI uses millisecond TTLs
|
|
ttl = (Time.now + 1.day).to_i
|
|
wopi_token = Token.create(token: token_string, ttl: ttl, user_id: id)
|
|
Rails.logger.warn("WOPI: generating new token #{wopi_token.token}")
|
|
wopi_token
|
|
end
|
|
|
|
def teams_ids
|
|
teams.pluck(:id)
|
|
end
|
|
|
|
# Returns a hash with user statistics
|
|
def statistics
|
|
statistics = {}
|
|
statistics[:number_of_teams] = teams.count
|
|
statistics[:number_of_projects] = projects.count
|
|
number_of_experiments = 0
|
|
projects.find_each do |pr|
|
|
number_of_experiments += pr.experiments.count
|
|
end
|
|
statistics[:number_of_experiments] = number_of_experiments
|
|
statistics[:number_of_protocols] =
|
|
added_protocols.where(
|
|
protocol_type: Protocol.protocol_types.slice(
|
|
:in_repository_private,
|
|
:in_repository_public,
|
|
:in_repository_archived
|
|
).values
|
|
).count
|
|
statistics
|
|
end
|
|
|
|
def self.from_azure_jwt_token(token_payload)
|
|
includes(:user_identities)
|
|
.where(
|
|
'user_identities.provider=? AND user_identities.uid=?',
|
|
Rails.configuration.x.azure_ad_apps[token_payload[:aud]][:provider],
|
|
token_payload[:sub]
|
|
)
|
|
.references(:user_identities)
|
|
.take
|
|
end
|
|
|
|
def has_linked_account?(provider)
|
|
user_identities.where(provider: provider).exists?
|
|
end
|
|
|
|
# This method must be overwriten for addons that will be installed
|
|
def show_login_system_notification?
|
|
user_system_notifications.show_on_login.present? &&
|
|
(ENV['ENABLE_TUTORIAL'] != 'true' || settings['tutorial_completed'])
|
|
end
|
|
|
|
# json friendly attributes
|
|
NOTIFICATIONS_TYPES = %w(assignments_notification recent_notification
|
|
assignments_email_notification
|
|
recent_email_notification
|
|
system_message_email_notification)
|
|
|
|
# declare notifications getters
|
|
NOTIFICATIONS_TYPES.each do |name|
|
|
define_method(name) do
|
|
attr_name = name.gsub('_notification', '')
|
|
notifications_settings.fetch(attr_name.to_sym)
|
|
end
|
|
end
|
|
|
|
# declare notifications setters
|
|
NOTIFICATIONS_TYPES.each do |name|
|
|
define_method("#{name}=") do |value|
|
|
attr_name = name.gsub('_notification', '').to_sym
|
|
notifications_settings[attr_name] = value
|
|
end
|
|
end
|
|
|
|
def enabled_notifications_for?(notification_type, channel)
|
|
return true if %i(deliver deliver_error).include?(notification_type)
|
|
|
|
case channel
|
|
when :web
|
|
notification_type == :recent_changes && recent_notification ||
|
|
notification_type == :assignment && assignments_notification
|
|
when :email
|
|
notification_type == :recent_changes && recent_email_notification ||
|
|
notification_type == :assignment && assignments_email_notification
|
|
end
|
|
end
|
|
|
|
def increase_daily_exports_counter!
|
|
range = Time.now.utc.beginning_of_day.to_i..Time.now.utc.end_of_day.to_i
|
|
last_export = export_vars[:last_export_timestamp] || 0
|
|
export_vars[:num_of_export_all_last_24_hours] ||= 0
|
|
|
|
if range.cover?(last_export)
|
|
export_vars[:num_of_export_all_last_24_hours] += 1
|
|
else
|
|
export_vars[:num_of_export_all_last_24_hours] = 1
|
|
end
|
|
export_vars[:last_export_timestamp] = Time.now.utc.to_i
|
|
save
|
|
end
|
|
|
|
def has_available_exports?
|
|
last_export_timestamp = export_vars[:last_export_timestamp] || 0
|
|
|
|
# limit 0 means unlimited exports
|
|
return true if TeamZipExport.exports_limit.zero? || last_export_timestamp < Time.now.utc.beginning_of_day.to_i
|
|
|
|
exports_left.positive?
|
|
end
|
|
|
|
def exports_left
|
|
if (export_vars[:last_export_timestamp] || 0) < Time.now.utc.beginning_of_day.to_i
|
|
return TeamZipExport.exports_limit
|
|
end
|
|
|
|
TeamZipExport.exports_limit - export_vars[:num_of_export_all_last_24_hours]
|
|
end
|
|
|
|
def global_activity_filter(filters, search_query)
|
|
query_teams = teams.pluck(:id)
|
|
query_teams &= filters[:teams].map(&:to_i) if filters[:teams]
|
|
query_teams &= User.team_by_subject(filters[:subjects]) if filters[:subjects]
|
|
User.where(id: UserTeam.where(team_id: query_teams).select(:user_id))
|
|
.search(false, search_query)
|
|
.select(:full_name, :id)
|
|
.map { |i| { label: escape_input(i[:full_name]), value: i[:id] } }
|
|
end
|
|
|
|
def file_name
|
|
return '' unless avatar.attached?
|
|
|
|
avatar.blob&.filename&.sanitized
|
|
end
|
|
|
|
def valid_otp?(otp)
|
|
raise StandardError, 'Missing otp_secret' unless otp_secret
|
|
|
|
totp = ROTP::TOTP.new(otp_secret, issuer: 'sciNote')
|
|
totp.verify(
|
|
otp,
|
|
drift_behind: ENV.fetch('OTP_DRIFT_TIME_SECONDS', DEFAULT_OTP_DRIFT_TIME_SECONDS).to_i
|
|
)
|
|
end
|
|
|
|
def assign_2fa_token!
|
|
self.otp_secret = ROTP::Base32.random
|
|
save!
|
|
end
|
|
|
|
def enable_2fa!
|
|
recovery_codes = []
|
|
Constants::TWO_FACTOR_RECOVERY_CODE_COUNT.times do
|
|
recovery_codes.push(SecureRandom.hex(Constants::TWO_FACTOR_RECOVERY_CODE_LENGTH / 2))
|
|
end
|
|
|
|
update!(
|
|
two_factor_auth_enabled: true,
|
|
otp_recovery_codes: recovery_codes.map { |c| Devise::Encryptor.digest(self.class, c) }
|
|
)
|
|
|
|
recovery_codes
|
|
end
|
|
|
|
def disable_2fa!
|
|
update!(two_factor_auth_enabled: false, otp_secret: nil, otp_recovery_codes: nil)
|
|
end
|
|
|
|
def recover_2fa!(code)
|
|
return unless otp_recovery_codes
|
|
|
|
otp_recovery_codes.each do |recovery_code|
|
|
if Devise::Encryptor.compare(self.class, recovery_code, code)
|
|
update!(otp_recovery_codes: otp_recovery_codes.reject { |i| i == recovery_code })
|
|
return true
|
|
end
|
|
end
|
|
false
|
|
end
|
|
|
|
protected
|
|
|
|
def confirmation_required?
|
|
Rails.configuration.x.enable_email_confirmations
|
|
end
|
|
|
|
def time_zone_check
|
|
if time_zone.nil? ||
|
|
ActiveSupport::TimeZone.new(time_zone).nil?
|
|
errors.add(:time_zone)
|
|
end
|
|
end
|
|
|
|
private
|
|
|
|
def downcase_email!
|
|
return unless email
|
|
|
|
self.email = email.downcase
|
|
end
|
|
|
|
def destroy_notifications
|
|
# Find all notifications where user is the only reference
|
|
# on the notification, and destroy all such notifications
|
|
# (user_notifications are destroyed when notification is
|
|
# destroyed). We try to do this efficiently (hence in_groups_of).
|
|
nids_all = notifications.pluck(:id)
|
|
nids_all.in_groups_of(1000, false) do |nids|
|
|
Notification
|
|
.where(id: nids)
|
|
.joins(:user_notifications)
|
|
.group('notifications.id')
|
|
.having('count(notification_id) <= 1')
|
|
.destroy_all
|
|
end
|
|
|
|
# Now, simply destroy all user notification relations left
|
|
user_notifications.destroy_all
|
|
end
|
|
|
|
def clear_view_cache
|
|
Rails.cache.delete_matched(%r{^views\/users\/#{id}-})
|
|
end
|
|
end
|