scinote-web/app/models/smart_annotation.rb

class SmartAnnotation
  include ActionView::Helpers::SanitizeHelper
  include ActionView::Helpers::TextHelper

  attr_writer :current_user, :query

  def initialize(current_user, query)
    @current_user = current_user
    @query = query
  end

  def resources
    my_modules
      .concat(projects)
      .concat(experiments)
      .concat(samples)
  end

  private

  def my_modules
    # Search tasks
    res = MyModule
          .search(@current_user, true, @query)
          .limit(Constants::ATWHO_SEARCH_LIMIT)

    modules_list = []
    res.each do |my_module_res|
      my_mod = {}
      my_mod['id'] = my_module_res.id
      my_mod['name'] = truncate(
        sanitize(my_module_res.name,
                 length: Constants::NAME_TRUNCATION_LENGTH)
      )
      my_mod['path'] = Rails
                       .application
                       .routes
                       .url_helpers
                       .protocols_my_module_path(my_module_res)
      my_mod['archived'] = my_module_res.archived
      my_mod['experimentName'] = truncate(
        sanitize(my_module_res.experiment.name,
                 length: Constants::NAME_TRUNCATION_LENGTH)
      )
      my_mod['projectName'] = truncate(
        sanitize(my_module_res.experiment.project.name,
                 length: Constants::NAME_TRUNCATION_LENGTH)
      )
      my_mod['type'] = 'tsk'

      modules_list << my_mod
    end
    modules_list
  end

  def projects
    # Search projects
    res = Project
          .search(@current_user, true, @query)
          .limit(Constants::ATWHO_SEARCH_LIMIT)

    projects_list = []
    res.each do |project_res|
      prj = {}
      prj['id'] = project_res.id
      prj['name'] = truncate(
        sanitize(project_res.name,
                 length: Constants::NAME_TRUNCATION_LENGTH)
      )
      prj['path'] = Rails
                    .application
                    .routes
                    .url_helpers
                    .project_path(project_res)
      prj['type'] = 'prj'
      projects_list << prj
    end
    projects_list
  end

  def experiments
    # Search experiments
    res = Experiment
          .search(@current_user, true, @query)
          .limit(Constants::ATWHO_SEARCH_LIMIT)

    experiments_list = []
    res.each do |experiment_res|
      exp = {}
      exp['id'] = experiment_res.id
      exp['name'] = truncate(
        sanitize(experiment_res.name,
                 length: Constants::NAME_TRUNCATION_LENGTH)
      )
      exp['path'] = Rails
                    .application
                    .routes
                    .url_helpers
                    .canvas_experiment_path(experiment_res)
      exp['type'] = 'exp'
      exp['project'] = truncate(
        sanitize(experiment_res.project.name,
                 length: Constants::NAME_TRUNCATION_LENGTH)
      )
      experiments_list << exp
    end
    experiments_list
  end

  def samples
    # Search samples
    res = Sample
          .search(@current_user, true, @query)
          .limit(Constants::ATWHO_SEARCH_LIMIT)

    samples_list = []
    res.each do |sample_res|
      sam = {}
      sam['id'] = sample_res.id
      sam['name'] = truncate(
        sanitize(sample_res.name,
                 length: Constants::NAME_TRUNCATION_LENGTH)
      )
      sam['path'] = Rails
                    .application
                    .routes
                    .url_helpers
                    .samples_project_path(sample_res
                                          .organization
                                          .projects
                                          .first)
      sam['description'] = "#{I18n.t('Added')} #{I18n.l(
        sample_res.created_at, format: :full_date
      )} #{I18n.t('by')} #{truncate(
        sanitize(sample_res.user.full_name,
                 length: Constants::NAME_TRUNCATION_LENGTH)
      )} #{(',' + truncate(
        sanitize(sample_res.sample_type.name,
                 length: Constants::NAME_TRUNCATION_LENGTH)
      )) if sample_res.sample_type}, #{(',' + truncate(
        sanitize(sample_res.sample_group.name,
                 length: Constants::NAME_TRUNCATION_LENGTH)
      )) if sample_res.sample_group}"
      sam['type'] = 'sam'
      samples_list << sam
    end
    samples_list
  end
end