mirror of
https://github.com/scinote-eln/scinote-web.git
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382 lines
10 KiB
Ruby
382 lines
10 KiB
Ruby
class ExperimentsController < ApplicationController
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include SampleActions
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include PermissionHelper
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include TeamsHelper
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include InputSanitizeHelper
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include ActionView::Helpers::TextHelper
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include ApplicationHelper
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include Rails.application.routes.url_helpers
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before_action :set_experiment,
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except: [:new, :create]
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before_action :set_project,
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only: [:new, :create, :samples_index, :samples, :module_archive,
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:clone_modal, :move_modal, :delete_samples]
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before_action :check_view_permissions,
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only: [:canvas, :module_archive]
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before_action :check_module_archive_permissions,
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only: [:module_archive]
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before_action :check_experiment_clone_permissions,
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only: [:clone_modal, :clone]
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before_action :check_experiment_move_permissions,
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only: [:move_modal, :move]
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# except parameter could be used but it is not working.
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layout :choose_layout
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# Action defined in SampleActions
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DELETE_SAMPLES = 'Delete'.freeze
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def new
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@experiment = Experiment.new
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respond_to do |format|
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format.json do
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render json: {
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html: render_to_string(
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partial: 'new_modal.html.erb'
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)
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}
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end
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end
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end
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def create
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@experiment = Experiment.new(experiment_params)
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@experiment.created_by = current_user
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@experiment.last_modified_by = current_user
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@experiment.project = @project
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if @experiment.save
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experiment_annotation_notification
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Activity.create(
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type_of: :create_experiment,
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project: @experiment.project,
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experiment: @experiment,
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user: current_user,
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message: I18n.t(
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'activities.create_experiment',
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user: current_user.full_name,
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experiment: @experiment.name
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)
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)
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flash[:success] = t('experiments.create.success_flash',
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experiment: @experiment.name)
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respond_to do |format|
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format.json do
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render json: { path: canvas_experiment_url(@experiment) }, status: :ok
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end
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end
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else
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respond_to do |format|
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format.json do
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render json: @experiment.errors, status: :unprocessable_entity
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end
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end
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end
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end
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def canvas
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@project = @experiment.project
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@active_modules = @experiment.active_modules
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.includes(:tags, :inputs, :outputs)
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current_team_switch(@project.team)
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end
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def edit
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respond_to do |format|
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format.json do
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render json: {
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html: render_to_string(
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partial: 'edit_modal.html.erb'
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)
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}
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end
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end
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end
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def update
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old_text = @experiment.description
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@experiment.update_attributes(experiment_params)
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@experiment.last_modified_by = current_user
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if @experiment.save
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experiment_annotation_notification(old_text)
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Activity.create(
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type_of: :edit_experiment,
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project: @experiment.project,
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experiment: @experiment,
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user: current_user,
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message: I18n.t(
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'activities.edit_experiment',
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user: current_user.full_name,
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experiment: @experiment.name
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)
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)
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@experiment.touch(:workflowimg_updated_at)
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flash[:success] = t('experiments.update.success_flash',
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experiment: @experiment.name)
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respond_to do |format|
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format.json do
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render json: {}, status: :ok
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end
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format.html do
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redirect_to project_path(@experiment.project)
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end
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end
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else
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flash[:alert] = t('experiments.update.error_flash')
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respond_to do |format|
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format.json do
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render json: @experiment.errors, status: :unprocessable_entity
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end
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format.html do
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redirect_to :back
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end
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end
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end
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end
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def archive
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@experiment.archived = true
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@experiment.archived_by = current_user
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@experiment.archived_on = DateTime.now
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if @experiment.save
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Activity.create(
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type_of: :archive_experiment,
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project: @experiment.project,
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experiment: @experiment,
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user: current_user,
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message: I18n.t(
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'activities.archive_experiment',
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user: current_user.full_name,
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experiment: @experiment.name
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)
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)
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flash[:success] = t('experiments.archive.success_flash',
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experiment: @experiment.name)
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redirect_to project_path(@experiment.project)
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else
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flash[:alert] = t('experiments.archive.error_flash')
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redirect_to :back
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end
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end
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# GET: clone_modal_experiment_path(id)
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def clone_modal
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@projects = @experiment.projects_with_role_above_user(current_user)
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respond_to do |format|
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format.json do
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render json: {
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html: render_to_string(
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partial: 'clone_modal.html.erb'
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)
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}
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end
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end
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end
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# POST: clone_experiment(id)
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def clone
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project = Project.find_by_id(params[:experiment].try(:[], :project_id))
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# Try to clone the experiment
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success = true
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if @experiment.projects_with_role_above_user(current_user).include?(project)
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cloned_experiment = @experiment.deep_clone_to_project(current_user,
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project)
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success = cloned_experiment.valid?
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# Create workflow image
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cloned_experiment.delay.generate_workflow_img if success
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else
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success = false
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end
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if success
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Activity.create(
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type_of: :clone_experiment,
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project: project,
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experiment: @experiment,
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user: current_user,
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message: I18n.t(
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'activities.clone_experiment',
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user: current_user.full_name,
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experiment_new: cloned_experiment.name,
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experiment_original: @experiment.name
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)
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)
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flash[:success] = t('experiments.clone.success_flash',
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experiment: @experiment.name)
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redirect_to canvas_experiment_path(cloned_experiment)
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else
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flash[:error] = t('experiments.clone.error_flash',
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experiment: @experiment.name)
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redirect_to project_path(@experiment.project)
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end
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end
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# GET: move_modal_experiment_path(id)
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def move_modal
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@projects = @experiment.moveable_projects(current_user)
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respond_to do |format|
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format.json do
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render json: {
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html: render_to_string(
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partial: 'move_modal.html.erb'
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)
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}
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end
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end
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end
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# POST: move_experiment(id)
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def move
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project = Project.find_by_id(params[:experiment].try(:[], :project_id))
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old_project = @experiment.project
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# Try to move the experiment
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success = true
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if @experiment.moveable_projects(current_user).include?(project)
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success = @experiment.move_to_project(project)
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else
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success = false
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end
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if success
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Activity.create(
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type_of: :move_experiment,
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project: project,
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experiment: @experiment,
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user: current_user,
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message: I18n.t(
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'activities.move_experiment',
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user: current_user.full_name,
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experiment: @experiment.name,
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project_new: project.name,
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project_original: old_project.name
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)
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)
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flash[:success] = t('experiments.move.success_flash',
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experiment: @experiment.name)
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respond_to do |format|
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format.json do
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render json: { path: canvas_experiment_url(@experiment) }, status: :ok
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end
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end
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else
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respond_to do |format|
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format.json do
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render json: { message: t('experiments.move.error_flash',
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experiment:
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escape_input(@experiment.name)) },
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status: :unprocessable_entity
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end
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end
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end
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end
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def module_archive
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end
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def samples
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@samples_index_link = samples_index_experiment_path(@experiment,
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format: :json)
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@team = @experiment.project.team
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end
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def samples_index
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@team = @experiment.project.team
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respond_to do |format|
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format.html
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format.json do
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render json: ::SampleDatatable.new(view_context,
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@team,
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nil,
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nil,
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@experiment,
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current_user)
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end
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end
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end
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def updated_img
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respond_to do |format|
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format.json do
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if @experiment.workflowimg_updated_at.to_i >=
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params[:timestamp].to_time.to_i
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render json: {}, status: 200
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else
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render json: {}, status: 404
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end
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end
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end
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end
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def fetch_workflow_img
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respond_to do |format|
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format.json do
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render json: {
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workflowimg: render_to_string(
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partial: 'projects/show/workflow_img.html.erb'
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)
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}
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end
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end
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end
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private
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def set_experiment
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@experiment = Experiment.find_by_id(params[:id])
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render_404 unless @experiment
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end
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def set_project
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@project = Project.find_by_id(params[:project_id]) || @experiment.project
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render_404 unless @project
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end
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def experiment_params
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params.require(:experiment).permit(:name, :description, :archived)
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end
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def check_view_permissions
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render_403 unless can_view_experiment(@experiment)
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end
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def check_module_archive_permissions
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render_403 unless can_view_experiment_archive(@experiment)
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end
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def check_experiment_clone_permissions
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render_403 unless can_clone_experiment(@experiment)
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end
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def check_experiment_move_permissions
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render_403 unless can_move_experiment(@experiment)
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end
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def choose_layout
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action_name.in?(%w(index archive)) ? 'main' : 'fluid'
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end
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def experiment_annotation_notification(old_text = nil)
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smart_annotation_notification(
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old_text: old_text,
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new_text: @experiment.description,
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title: t('notifications.experiment_annotation_title',
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experiment: @experiment.name,
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user: current_user.full_name),
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message: t('notifications.experiment_annotation_message_html',
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project: link_to(@experiment.project.name,
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project_url(@experiment.project)),
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experiment: link_to(@experiment.name,
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canvas_experiment_url(@experiment)))
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)
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end
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end
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