felicity-lims/felicity/tests/sample_workflow/test_08_sample.py

import logging

import pytest

from felicity.apps.impress.tasks import impress_results

logging.basicConfig(level=logging.INFO)
logger = logging.getLogger(__name__)


@pytest.mark.asyncio
@pytest.mark.order(90)
async def test_sample_publish(gql_client, auth_data):
    add_gql = """
       mutation PublishSamples ($samples: [SamplePublishInputType!]!) {
        publishSamples(samples: $samples){
          ... on OperationSuccess{
            __typename
            message
          }

          ... on OperationError {
            __typename
            error
            suggestion
          }
        }
      }
    """

    response = await gql_client.post(
        "/felicity-gql",
        json={
            "query": add_gql,
            "variables": {
                "samples": [
                    {"uid": 1, "action": "publish"},
                    {"uid": 2, "action": "publish"},
                    {"uid": 3, "action": "publish"},
                    {"uid": 4, "action": "publish"},
                    {"uid": 5, "action": "publish"},
                ],
            },
        },
        headers=auth_data["headers"],
    )

    logger.info(f"publishing samples response: {response} {response.json()}")

    assert response.status_code == 200
    _data = response.json()["data"]["publishSamples"]
    assert _data["message"] == "Your results are being published in the background."

    # process job for the next test
    await impress_results(6)


@pytest.mark.asyncio
@pytest.mark.order(91)
async def test_sample_invalidate(gql_client, auth_data):
    add_gql = """
      mutation InvalidateSamples ($samples: [Int!]!) {
        invalidateSamples(samples: $samples){
          ... on SampleListingType{
            __typename
            samples {
              uid
              status
              sampleId
            }
          }

          ... on OperationError {
            __typename
            error
            suggestion
          }
        }
      }
    """

    response = await gql_client.post(
        "/felicity-gql",
        json={
            "query": add_gql,
            "variables": {
                "samples": [1],
            },
        },
        headers=auth_data["headers"],
    )

    logger.info(f"publishing samples response: {response} {response.json()}")

    assert response.status_code == 200
    _data = response.json()["data"]["invalidateSamples"]
    assert len(_data["samples"]) == 2
    for _, sample in enumerate(_data["samples"]):
        if sample["uid"] == 1:
            assert sample["status"] == "invalidated"
            assert sample["sampleId"].endswith("_R01") is False
        else:
            assert sample["status"] == "received"
            assert sample["sampleId"].endswith("_R01") is True