scinote-web/app/assets/templates/experiment_454/experiment.json

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{"experiment":{"id":454,"name":"Bottom-up Proteomics","description":"This template will help you prepare protein samples, followed by the cleanup and mass spectrometry analysis. \r\nIn bottom-up proteomics, the protein is first broken up into peptides, either by chemical or enzymatic digestion. In the first step, sample preparation is required after gel electrophoresis, liquid chromatography or affinity capture. Samples can (optionally) be enriched at the peptide level. With mass spectrometry, in the end, you can identify and characterize biological molecules.","project_id":223,"created_by_id":202,"last_modified_by_id":202,"archived":false,"archived_by_id":null,"archived_on":null,"restored_by_id":null,"restored_on":null,"created_at":"2018-11-26T08:55:55.988Z","updated_at":"2019-01-29T09:46:44.060Z","workflowimg_file_name":"wimg20181219-1-nlf5rk.png","workflowimg_content_type":"image/png","workflowimg_file_size":4681,"workflowimg_updated_at":"2019-01-29T09:46:44.060Z","uuid":"838d4b6a-56d7-4391-8b3c-fa73517de68f"},"my_modules":[{"my_module":{"id":2276,"name":"Mass spectrometry","due_date":null,"description":null,"x":38,"y":32,"my_module_group_id":1179,"created_at":"2018-11-28T07:52:48.731Z","updated_at":"2018-12-19T09:02:54.885Z","archived":false,"archived_on":null,"created_by_id":202,"last_modified_by_id":202,"archived_by_id":null,"restored_by_id":null,"restored_on":null,"nr_of_assigned_samples":0,"workflow_order":6,"experiment_id":454,"state":"uncompleted","completed_on":null},"outputs":[],"my_module_tags":[],"task_comments":[],"my_module_repository_rows":[],"user_my_modules":[],"protocols":[{"protocol":{"id":3707,"name":null,"authors":null,"description":null,"added_by_id":null,"my_module_id":2276,"team_id":1,"protocol_type":"unlinked","parent_id":null,"parent_updated_at":null,"archived_by_id":null,"archived_on":null,"restored_by_id":null,"restored_on":null,"created_at":"2018-11-28T07:52:48.739Z","updated_at":"2019-02-19T14:11:00.434Z","published_on":null,"nr_of_linked_children":0},"protocol_protocol_keywords":[],"steps":[{"step":{"id":4880,"name":"Select appropriate MS Instrument","description":"\u003c!DOCTYPE html PUBLIC \"-//W3C//DTD HTML 4.0 Transitional//EN\" \"http://www.w3.org/TR/REC-html40/loose.dtd\"\u003e\n\u003chtml\u003e\u003cbody\u003e\u003cp\u003eDepending on the different type of samples there are different mass spectrometry instrument that can be selected. \u003c/p\u003e\u003c/body\u003e\u003c/html\u003e","position":0,"completed":false,"completed_on":null,"user_id":202,"created_at":"2018-11-28T07:54:48.624Z","updated_at":"2018-12-24T08:08:49.563Z","last_modified_by_id":202,"protocol_id":3707},"checklists":[],"step_comments":[],"step_assets":[],"assets":[],"step_tables":[{"id":491,"step_id":4880,"table_id":622}],"tables":[{"id":622,"created_at":"2018-11-28T07:54:48.627Z","updated_at":"2018-12-24T08:08:49.543Z","created_by_id":202,"last_modified_by_id":202,"name":"Commonly used mass spectrometers and their characteristics","team_id":1,"contents":"eyJkYXRhIjpbWyJJbnN0cnVtZW50IiwiTWFzcyByZXNvbHV0aW9uIiwiTWFz\ncyBhY2N1cmFjeSIsIlNlbnNpdGl2aXR5IiwibS96IHJhbmdlIiwiU2NhbiBy\nYXRlIiwiRHluYW1pYyByYW5nZSIsIk1TL01TIGNhcGFiaWxpdHkiLCJJb24g\nU291cmNlIiwiTWFpbiBhcHBsaWNhdGlvbnMiXSxbIlFJVCIsIjEwMDAiLCIx\nMDDigJMxMDAwIHBwbSIsInBpY29tb2xlIiwiNTDigJMyMDAwOyAyMDDigJM0\nMDAwIiwibW9kZXJhdGUiLCIxIEUzIiwiTVMiLCJFU0kiLCJwcm90ZWluIGlk\nZW50aWZpY2F0aW9uIG9mIGxvdyBjb21wbGV4IHNhbXBsZXM7IFBUTSBpZGVu\ndGlmaWNhdGlvbiJdLFsiTFRRIiwiMjAwMCIsIjEwMOKAkzUwMCBwcG0iLCJm\nZW10b21vbGUiLCI1MOKAkzIwMDA7IDIwMOKAkzQwMDAiLCJmYXN0IiwiMSBF\nNCIsIk1TIiwiRVNJIiwiaGlnaCB0aHJvdWdocHV0IGxhcmdlIHNjYWxlIHBy\nb3RlaW4gaWRlbnRpZmljYXRpb24gZnJvbSBjb21wbGV4IHBlcHRpZGUgbWl4\ndHVyZXMgYnkgb24tbGluZSBMQy1NU247IFBUTSBpZGVudGlmaWNhdGlvbiJd\nLFsiUS1xLVEiLCIxLDAwMCIsIjEwMOKAkzEwMDAgcHBtIiwiYXR0b21vbGUg\ndG8gZmVtdG9tb2xlIiwiMTDigJM0MDAwIiwibW9kZXJhdGUiLCI2IEU2Iiwi\nTVMvTVMiLCJFU0kiLCJxdWFudGlmaWNhdGlvbiBpbiBzZWxlY3RlZCByZWFj\ndGlvbiBtb25pdG9yaW5nIChTUk0pIG1vZGU7IFBUTSBkZXRlY3Rpb24gaW4g\ncHJlY3Vyc29yIGlvbiBhbmQgbmV1dHJhbCBsb3NzIHNjYW5uaW5nIG1vZGVz\nIl0sWyJRLXEtTElUIiwiMjA