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12058 commits 69 branches 179 tags 165 MiB
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984 commits

Author SHA1 Message Date
ajugo 13798374ed
Add consume column to assigned item export [SCI-6841] (#4115) 
* Add consume column to assigned item export [SCI-6841]

* Fix hound [SCI-6841]
 2022-06-03 10:10:00 +02:00
Martin Artnik 9abbe22c26 Merge branch 'develop' into features/step-editing-improvements 2022-06-02 11:26:39 +02:00
Anton 08e7ea3014 Add step text option to report wizard [SCI-6865] 2022-06-01 15:53:40 +02:00
Anton a2f7f38e31 Update step structure in report [SCI-6855] 2022-05-30 11:33:56 +02:00
ajugo 90db2bace9
API endpoint to generate with ELN data for Validaide [SCI-6663][SCI-6798] (#4012) 
* Manuscript JSON data SCI-6663

* Clean code for generate manuscript data [SCI-6663]

* Include project data into json [SCI-6663]

* Fix hound [SCI-6663]

* Fix hound [SCI-6663]

* Remove manuscript naming [SCI-6663]

* Add local storage assets capabilites [SCI-6663]

* Rename project [SCI-6663]

* Enable multple projects and clean input [SCI-6798]

* Fix hound [SCI-6798]
 2022-05-19 09:08:05 +02:00
Oleksii Kriuchykhin 823e552ef6 Fix displaying of stock consumption units [SCI-6795] 2022-05-10 10:19:37 +02:00
ajugo 2bda271615
Open repository on print view [SCI-6566] (#4055) 2022-05-03 09:30:33 +02:00
Alex Kriuchykhin 892b5e2348
Merge pull request #4056 from okriuchykhin/ok_SCI_6769 
Fix blank stock consumption representation in reports [SCI-6769]
 2022-04-28 11:18:12 +02:00
Oleksii Kriuchykhin b6501fcf36 Fix blank stock consumption representation in reports [SCI-6769] 2022-04-25 17:10:44 +02:00
Oleksii Kriuchykhin 9f5ebee4e2 Fix duplicated inventories on tasks for export all [SCI-6776] 2022-04-25 13:45:58 +02:00
Anton 84f91634d3 Fix stock consumption in reports [SCI-6735] 2022-04-14 14:46:09 +02:00
aignatov-bio 4a232ac391
Merge pull request #4020 from biosistemika/features/projects-experiments-pagination 
Features/projects experiments pagination
 2022-04-14 10:45:27 +02:00
Alex Kriuchykhin f7f03b19c0
Add locking and unique index to repository row assigning [SCI-6591] (#3921) 2022-04-13 10:54:23 +02:00
Anton d091c56e9f Add pagination for experiments [SCI-6656] 2022-04-12 15:16:02 +02:00
Alex Kriuchykhin f8a598b408
Improve loading of the dashboard [SCI-6618] (#4001) 2022-04-08 11:09:13 +02:00
Alex Kriuchykhin 09d0bb4a32
Fix sorting by date time columns in inventories [SCI-6683] (#4002) 2022-04-08 11:08:51 +02:00
Martin Artnik 45a325e824 Merge branch 'develop' into features/stock-management 2022-03-30 11:10:40 +02:00
ajugo f75265974e
Print protocol smart annotation and table improvements [SCI-6566] (#3925) 
* Improve table printing in the print menu [SCI-6566]

* Open smart annotation in new tab for print view [SCI-6566]

* Unify naming of same parameter [SCI-6566]

* Fix typo [SCI-6566]

* Fix hound errors [SCI-6566]
 2022-03-29 12:09:33 +02:00
artoscinote 725549c8ca
Add alias to cell sort query, to prevent join conflicts [SCI-6649] (#3953) 
* Add alias to cell sort query, to prevent join conflicts [SCI-6649]

* Added value_type to join condition to make use of DB index [SCI-6649]
 2022-03-28 16:48:05 +02:00
Anton 8b8e2c6d92 Merge branch 'develop' into features/stock-management 2022-03-14 11:56:38 +01:00
artoscinote 06430c9340
Fix moving experiment [SCI-6602] (#3927) 2022-03-09 15:30:30 +01:00
artoscinote 20ef08907a
Stock column fixes [SCI-6455] (#3878) 
* Fix issues with stock column management [SCI-6455]

* Refactor stock column in datatables [SCI-6455]
 2022-03-08 14:52:45 +01:00
aignatov-bio 881e6403aa
Fix rte table in docx report [SCI-6449] (#3916) 
Co-authored-by: Anton <anton@scinote.net>
 2022-03-03 14:12:06 +01:00
artoscinote 87d202f3eb
Fix my_module_activities in AcitivtyService [SCI-6562] (#3908) 2022-03-01 12:28:45 +01:00
aignatov-bio 99e8f7e3cb
Fix added on this month filter [SCI-6584] (#3904) 
Co-authored-by: Anton <anton@scinote.net>
 2022-02-28 11:16:29 +01:00
Alex Kriuchykhin c0e4b6f1f6
Fix advanced filters for added on field [SCI-6578] (#3895) 2022-02-25 14:30:37 +01:00
aignatov-bio 7b4968a7a3
Fix archived on filters fix [SCI-6579] (#3897) 
Co-authored-by: Anton <anton@scinote.net>
 2022-02-25 14:29:27 +01:00
aignatov-bio 91ab7d0b40
Update none of operator for assigned tasks [SCI-6572] (#3884) 
Co-authored-by: Anton <anton@scinote.net>
 2022-02-23 10:05:24 +01:00
Alex Kriuchykhin dd5939e89d
Fix advanced filters for ID and Name columns [SCI-6496] (#3865) 2022-02-22 14:49:17 +01:00
artoscinote b8b7773a3f
Fix today, this month, this year operators [SCI-6527] (#3845) 2022-02-22 14:14:16 +01:00
aignatov-bio 1f45e3f01d
Fix for docx renderer [SCI-6540] (#3879) 
Co-authored-by: Anton <anton@scinote.net>
 2022-02-21 13:26:52 +01:00
Alex Kriuchykhin 6b51b8a35c
Fix handling of date values in repositories [SCI-6551] (#3877) 2022-02-21 12:08:35 +01:00
Alex Kriuchykhin fe44f6d22f
Fix advanced filters for archived_on column [SCI-6530] (#3859) 2022-02-15 18:02:08 +01:00
Alex Kriuchykhin ad0bd44b51
Allow multiple use of same column in advanced filters [SCI-6538] (#3857) 2022-02-15 18:01:53 +01:00
artoscinote fa6f883fc7
Fix ambiguous created_at column in added_on filter [SCI-6535] (#3852) 2022-02-14 15:03:50 +01:00
Alex Kriuchykhin 1e0966ac11
Fix advanced filtering for check list items [SCI-6522] (#3841) 2022-02-11 10:48:50 +01:00
Alex Kriuchykhin ed8ba13525
Fix advanced search for file type columns [SCI-6518] (#3839) 2022-02-11 10:47:32 +01:00
Alex Kriuchykhin 79c32e30ad
Add support of repository snapshots to assigned items section [SCI-6439] (#3828) 2022-02-11 10:46:19 +01:00
Alex Kriuchykhin b9204e1ce3
Add type specific indices for date time repository values [SCI-6485] (#3825) 2022-02-11 10:45:21 +01:00
artoscinote bc5822de7b
Added error messges for missing search columns/values [SCI-6483] (#3824) 
* Added error messges for missing search columns/values [SCI-6483]
 2022-02-11 10:24:29 +01:00
aignatov-bio 1efe3ddd37
Add stock consumption to pdf and docx [SCI-6460] (#3816) 
Co-authored-by: Anton <anton@scinote.net>
 2022-02-11 10:09:52 +01:00
Alex Kriuchykhin cc063a46b7
Fix time zone issues in advanced repository filters [SCI-6467] (#3819) 2022-02-04 10:30:11 +01:00
aignatov-bio ec6886735c
Add archived on column [SCI-6482] (#3823) 
Co-authored-by: Anton <anton@scinote.net>
 2022-02-03 13:18:15 +01:00
Alex Kriuchykhin c1972e4fb2
Fix advanced filtering with multiple filters [SCI-6471] (#3807) 2022-01-31 11:10:39 +01:00
Alex Kriuchykhin fbcb94193a
Fix repository advanced filtering on time column [SCI-6467] (#3805) 2022-01-31 09:41:20 +01:00
Oleksii Kriuchykhin dd5f8c2793 Add stock management columns to snapshots [SCI-6448] 2022-01-28 13:19:37 +01:00
Oleksii Kriuchykhin 6d877e6bf7 Fix repository users list and filtering by row name [SCI-6457] 2022-01-27 22:50:04 +01:00
artoscinote d779f352a7
Merge pull request #3796 from biosistemika/features/repository-filters 
Features/repository filters
 2022-01-26 10:36:30 +01:00
Alex Kriuchykhin e55c9ec1cc
Merge pull request #3785 from okriuchykhin/ok_SCI_6423 
Fix filtering for repository snapshots [SCI-6423]
 2022-01-25 12:59:46 +01:00
aignatov-bio 82aa26c282
Fix docx file preview [SCI-6299] (#3709) 
Co-authored-by: Anton <anton@scinote.net>
 2022-01-25 12:28:14 +01:00
Alex Kriuchykhin d2b5db13e9
Add stock and consumption to assigned items section [SCI-6434] (#3793) 2022-01-25 12:12:55 +01:00
Alex Kriuchykhin 5b335139e5
Merge pull request #3761 from artoscinote/ma_SCI_6388 
Fix added_on filter, add specs [SCI-6388]
 2022-01-24 16:47:03 +01:00
Martin Artnik abac837cd4 Merge branch 'develop' of github.com:biosistemika/scinote-web into features/repository-filters 2022-01-20 13:26:08 +01:00
Oleksii Kriuchykhin 5dd7ca2218 Fix representation of experiment workflow images [SCI-6431] 2022-01-19 18:07:55 +01:00
aignatov-bio 01f1b5bd10
Add stock column type (#3786) 
* Add stock column type

* Create new stock column [SCI-6410]

* Small fixed for stock column [SCI-6410]

* Add stock column validations [SCI-6410]

Co-authored-by: Anton <anton@scinote.net>
 2022-01-18 13:17:05 +01:00
Oleksii Kriuchykhin 34554e57e3 Fix filtering for repository snapshots [SCI-6423] 2022-01-17 21:53:13 +01:00
Martin Artnik 66081950f0 Fix added_on filter, add specs [SCI-6388] 2022-01-04 19:20:02 +01:00
aignatov-bio a3dda322f6
Add report and protocol repository activities to recent work widget [SCI-6336] (#3749) 
Co-authored-by: Anton <anton@scinote.net>
 2021-12-21 12:43:08 +01:00
Oleksii Kriuchykhin 738da6094f Add advanced filters to repository datatable service [SCI-6210] 2021-12-21 12:38:52 +01:00
Alex Kriuchykhin e72b58e6a3
Merge pull request #3704 from okriuchykhin/ok_SCI_6303 
Improve error handling in snapshot provisioning service [SCI-6303]
 2021-12-15 10:18:52 +01:00
Oleksii Kriuchykhin e67b17dd6f Optimize loading of project and experiment cards [SCI-6346] 2021-12-13 16:43:16 +01:00
Oleksii Kriuchykhin 8f1b201061 Improve activities loading speed [SCI-6345] 2021-12-09 19:28:27 +01:00
artoscinote c80cbe34f4
Remove invalid designated users when moving experiment [SCI-6335] (#3722) 2021-12-06 14:27:26 +01:00
Miha Mencin cd0dc454f5 Fix the code style 2021-12-02 17:14:01 +01:00
Miha Mencin 9031f5b2c5 replace perform_later with perform_now, so we can catch a possible arror during the transaction 2021-12-02 17:04:28 +01:00
Miha Mencin b964bfd31e [SCI-6322] use correct user when creating templates, create assignment on experiments and tasks 2021-12-02 16:54:43 +01:00
aignatov-bio 850b164724
Update error handling for experiment move [SCI-6293] (#3703) 
Co-authored-by: Anton <anton@scinote.net>
 2021-12-01 11:24:01 +01:00
Oleksii Kriuchykhin db2c903e54 Improve error handling in snapshot provisioning service [SCI-6303] 2021-11-29 10:51:49 +01:00
Anton 774aa6cf9c Fix experiment moving with archived tasks [SCI-6291] 2021-11-23 11:25:29 +01:00
Anton a44dd8c915 Merge branch 'features/bmt-search' into features/repository-filters 2021-11-22 14:24:28 +01:00
aignatov-bio 06577e2f8b
Skip create assignments during team import [SCI-6280] (#3679) 
Co-authored-by: Anton <anton@scinote.net>
 2021-11-22 11:17:39 +01:00
aignatov-bio 8545b5787f
Create assignment after experiment move [SCI-6285] (#3689) 
Co-authored-by: Anton <anton@scinote.net>
 2021-11-22 10:34:11 +01:00
aignatov-bio 881251fe14
Skip null subjects for activities moving [SCI-6285] (#3686) 
Co-authored-by: Anton <anton@scinote.net>
 2021-11-19 14:06:26 +01:00
Alex Kriuchykhin ebfd2f7924
Merge pull request #3682 from okriuchykhin/ok_SCI_6088 
Add API endpoint for Cloning Experiments [SCI-6088]
 2021-11-18 15:26:19 +01:00
aignatov-bio 57de414284
Fix user assignment for team import [SCI-6242] (#3675) 
Co-authored-by: Anton <anton@scinote.net>
 2021-11-17 13:33:29 +01:00
Oleksii Kriuchykhin 2e92500a73 Fix seeds to work with new UserRoles, fix Templates creation job [SCI-6270] 2021-11-15 21:36:06 +01:00
artoscinote a6c61c2b4e
Fixed permission issues when moving experiment [SCI-6257] (#3655) 
* Fixed permission issues when moving experiment [SCI-6257]

* Copy fixes [SCI-6248]

* Use canaid helper instead of permission_granted [SCI-6257]

* Fixes [SCI-6257]
 2021-11-12 12:59:49 +01:00
Alex Kriuchykhin 1c3a2aa0a7
Fix permissions checks in recent work service [SCI-6253] (#3654) 2021-11-12 11:13:43 +01:00
Martin Artnik 9e7eee5f2c Fixed to use .update! [SCI-6128] 2021-11-10 11:55:38 +01:00
Martin Artnik 68362bcb9c Fix experiment move service [SCI-6128] 2021-11-10 11:46:48 +01:00
artoscinote dcdd9ece13
Fixed docx report image generation [SCI-6203] (#3639) 
* Fixed docx report image generation [SCI-6203]

* Added error logging for docx image render error [SCI-6203]
 2021-11-09 09:35:02 +01:00
Alex Kriuchykhin f11a4701d0
Merge pull request #3629 from artoscinote/ma_SCI_6193 
Added optional webhook secret key [SCI-6193]
 2021-11-08 21:00:40 +01:00
artoscinote ba5403ab5e
Fixed activities service for singular relations (asset/result) [SCI-6204] (#3633) 2021-11-04 14:20:51 +01:00
artoscinote 33190e4582
Fixed typo in project overview service [SCI-6199] (#3632) 2021-11-04 14:20:42 +01:00
Martin Artnik 3406cd9235 Added optional webhook secret key [SCI-6193] 2021-11-03 15:04:13 +01:00
Oleksii Kriuchykhin a99599efea Merge branch 'features/new_permissions' into develop 2021-10-29 15:16:30 +02:00
artoscinote 1bb30b2c49
Also move activities when moving experiment to another project [SCI-6047] (#3535) 
* Also move activities when moving experiment to another project [SCI-6047]

* Changed update to update! [SCI-6047]
 2021-10-28 16:35:47 +02:00
Alex Kriuchykhin 1bde37db78
Merge branch 'develop' into ok_SCI_5579 2021-10-28 13:26:27 +02:00
Oleksii Kriuchykhin 2fb71aa312 Add API endpoint for Cloning Experiments [SCI-6088] 2021-10-28 12:28:46 +02:00
aignatov-bio 9e3d64bbb6
Fix projects list in clone experiment dropdowns [SCI-6139] (#3592) 
Co-authored-by: Anton <anton@scinote.net>
 2021-10-27 13:55:49 +02:00
aignatov-bio 22034089a6
Update experiment move service [SCI-6149] (#3599) 
* Update experiment move service [SCI-6149]

* Move permission check to helper [SCI-6149]

Co-authored-by: Anton <anton@scinote.net>
 2021-10-27 13:48:52 +02:00
Alex Kriuchykhin f6a30cac6c
Merge pull request #3593 from okriuchykhin/ok_SCI_6134 
Change Dashboard::RecentWorkService to use new user roles [SCI-6134]
 2021-10-26 11:43:54 +02:00
aignatov-bio aa4b765407
Update assign/unassign rows to task [SCI-6150] (#3604) 
Co-authored-by: Anton <anton@scinote.net>
 2021-10-26 11:41:08 +02:00
aignatov-bio edb09dd099
Update copy experiment permission checks [SCI-6147] (#3598) 
Co-authored-by: Anton <anton@scinote.net>
 2021-10-26 11:40:54 +02:00
Alex Kriuchykhin ac176f6c9e
Merge pull request #3596 from okriuchykhin/ok_SCI_6113 
Add user roles to team importer/exporter [SCI-6113]
 2021-10-25 14:06:17 +02:00
Oleksii Kriuchykhin b10a6c8b7d Add user roles to team importer/exporter [SCI-6113] 2021-10-14 13:21:36 +02:00
artoscinote c63090da8c
Fixed scopes and added permission checks to quick create services [SCI-6135] (#3584) 2021-10-14 13:13:29 +02:00
Oleksii Kriuchykhin bc806f0c86 Change Dashboard::RecentWorkService to use new user roles [SCI-6134] 2021-10-13 14:12:24 +02:00
artoscinote 75d6a17cb7
Fix ProjectOverviewService and automatic project assignment [SCI_6117] (#3572) 2021-10-04 11:20:47 +02:00
aignatov-bio 3eb2c98cce
Update render permission for smart annotation [SCI-6112] (#3571) 2021-10-01 14:23:29 +02:00
artoscinote 63923f0e63
Skip inaccessible elements when generating reports [SCI-6109] (#3569) 2021-10-01 14:18:40 +02:00
artoscinote f68d724202
Rework experiment permissions [SCI-6054] (#3538) 
* Rework experiment permissions [SCI-6054]
 2021-09-30 11:32:11 +02:00
Martin Artnik 49b9ee37cc Merge branch 'develop' into features/bmt-search 2021-09-24 11:01:27 +02:00
aignatov-bio 4472eb1023
Fix docx preview render [SCI-6035] (#3559) 2021-09-24 10:01:55 +02:00
Alex Kriuchykhin 0db9bf46ff
Merge pull request #3528 from okriuchykhin/ok_SCI_6036 
Prevent creation of duplicated repository cells [SCI-6036]
 2021-09-17 16:37:48 +02:00
Oleksii Kriuchykhin e8e1ee3011 Prevent creation of duplicated repository cells [SCI-6036] 2021-09-09 14:24:35 +02:00
Oleksii Kriuchykhin 7041cc19af Fix BMT base URL path in requests [SCI-6010] 2021-09-07 16:28:14 +02:00
Oleksii Kriuchykhin 3cab5751e7 Add rake task for creation and syncing structure of BMT inventory [SCI-6010] 2021-09-07 12:17:09 +02:00
Martin Artnik 7e6ca3be8a Merge branch 'develop' into features/new_permissions 2021-09-06 10:33:32 +02:00
Oleksii Kriuchykhin b32477a933 Add error message in report in case of file preview generation failure [SCI-5848] 2021-08-30 14:18:31 +02:00
Martin Artnik 896f0ce1e3 Implemented applying BMT filters [SCI-5980] 2021-08-30 10:49:15 +02:00
Oleksii Kriuchykhin d4ef2b1bd4 Add BMT inventory model [SCI-6009] 2021-08-30 10:49:15 +02:00
Oleksii Kriuchykhin 0b74f34de7 Add external IDs to repositories [SCI-5990] 2021-08-30 10:49:14 +02:00
Martin Artnik 1b26a4f65a Added access token to protocols.io requests [SCI-5968] 2021-08-26 15:26:35 +02:00
Martin Artnik 56576960b0 Rework molecule registration activities [SCI-5999] 2021-08-13 15:15:45 +02:00
Martin Artnik 861be4bb35 Fix issues with BioEddie integration [SCI-5982] 2021-08-11 09:50:00 +02:00
Martin Artnik 8f3f39f7c7 Fixed handling of activity subject parents when matching activity filters [SCI-5973] 2021-08-06 13:43:30 +02:00
Martin Artnik 57d5e6c2a7 Merge branch 'develop' into features/barcodes 2021-08-03 13:36:36 +02:00
artoscinote f839cb5256
Merge pull request #3464 from biosistemika/features/bioeddie-integration 
Features/bioeddie integration
 2021-08-03 13:32:53 +02:00
artoscinote c41247a5fd
Merge pull request #3439 from artoscinote/ma_SCI_5879 
Implement Save & Register molecule [SCI-5879]
 2021-08-03 12:15:46 +02:00
Martin Artnik a82af505eb Merge branch 'develop' into features/webhooks 2021-08-02 16:22:52 +02:00
Martin Artnik 0f417f9730 Merge branch 'develop' into features/barcodes 2021-07-29 13:32:17 +02:00
Martin Artnik 67f4e81a3a Merge branch 'develop' into features/new_permissions 2021-07-28 15:16:47 +02:00
Martin Artnik e57132dbd0 Added print job queue system, job status endpoint [SCI-5903] 2021-07-27 15:26:18 +02:00
Martin Artnik 53e072f79e Added error handling to API wrapper [SCI-5939] 2021-07-27 10:36:06 +02:00
Martin Artnik 61919e81b6 Remove FLUICS API client hack [SCI-5939] 2021-07-27 09:41:51 +02:00
Martin Artnik b32b207f3d Added FLUICS API client [SCI-5939] 2021-07-23 13:52:28 +02:00
Oleksii Kriuchykhin c26dcf4b23 Replace empty? with blank? [SCI-5579] 2021-07-23 11:56:28 +02:00
Martin Artnik 662370d2bd Removed auto-disable, fixed ActiveJob + DelayedJob retry handling [SCI-5800] 2021-07-22 13:43:36 +02:00
Martin Artnik 4bb080c25b Merge migrations, code fixes [SCI-5800] 2021-07-22 10:51:03 +02:00
Martin Artnik 04b94d504d Moved activity logging to controller [SCI-5879] 2021-07-22 09:52:04 +02:00
Alex Kriuchykhin dfa2a7775d
Merge pull request #3422 from okriuchykhin/ok_SCI_5847 
Fix repository cell joining and preloading [SCI-5847]
 2021-07-21 13:18:21 +02:00
Alex Kriuchykhin dbc54278b2
Merge pull request #3211 from okriuchykhin/ok_SCI_5531 
Add basic API client for BMT [SCI-5531]
 2021-07-21 13:13:52 +02:00
Oleksii Kriuchykhin 36708b47cf Fix code styling [SCI-5531] 2021-07-21 13:10:30 +02:00
artoscinote 888131a465
Merge branch 'features/bioeddie-integration' into ma_SCI_5879 2021-07-20 09:48:13 +02:00
aignatov-bio 53456988ba
Add bioEddie activities and user licenses [SCI-5845][SCI-5842] (#3411) 
* Add bio eddie licens to users [SCI-5845]

* Add activities for BioEddie [SCI-5842]
 2021-07-19 21:33:28 +02:00
artoscinote 5f9c04844f
Added prefixed IDs to repository rows (items) [SCI-5909] (#3441) 
* Added prefixed IDs to repository rows (items) [SCI-5909]

* Fix prefixed id queries to work with joins, use subquery in repository search [SCI-5909]

* Fixed accessing repository_row parent code [SCI-5909]

* Better handling of repository_row code display [SCI-5909]

* Fix index warning for id prefixed models issue setting up project [SCI-5909]
 2021-07-19 14:23:36 +02:00
Martin Artnik 96a5b97bdb Implement Save & Register molecule [SCI-5879] 2021-07-15 12:37:04 +02:00
Oleksii Kriuchykhin 549fc8e5a0 Fix repository cell joining and preloading [SCI-5847] 2021-07-07 17:43:51 +02:00
Oleksii Kriuchykhin d1208bad0b Merge branch 'develop' into features/new_permissions 2021-07-07 13:44:36 +02:00
Martin Artnik 3662365cac Small code style tweak SCI-5800 2021-06-30 13:15:08 +02:00
Martin Artnik 618f5cfb53 Code style fixes [SCI-5800] 2021-06-30 13:08:16 +02:00
artoscinote 723b594632
Merge pull request #3398 from artoscinote/ma_SCI_5828 
Expose experiment IDs in interface and reports [SCI-5828]
 2021-06-30 12:58:25 +02:00
Martin Artnik b623e2f40f Report generation fixes [SCI-5851] 2021-06-29 13:46:45 +02:00
aignatov-bio 786e74e4de
Add BioEddie integration [SCI-5654][SCI-5657][SCI-5658][SCI-5670] (#3391) 
* Add backend for bioeddie [SCI-5654]

* Add modal for bioeddie [SCI-5654]

* Add bio eddie editor to steps and results [SCI-5654]

* Fix markup and code styling
 2021-06-23 19:48:44 +02:00
Martin Artnik d67d53b926 Code style fixes 2021-06-22 13:27:03 +02:00
Martin Artnik 66d2e65114 Fixed report docx generation [SCI-5837] 2021-06-21 12:52:12 +02:00
Martin Artnik 879cf5081d Added experiment code to experiment cards filter [SCI-5829] 2021-06-18 14:38:07 +02:00
Martin Artnik afc1b2d8b6 Added experiment code to PDF and DOCX [SCI-5830] 2021-06-18 14:14:02 +02:00
Oleksii Kriuchykhin bb458abec6 Remove old reports code [SCI-5650] 2021-06-18 10:40:00 +02:00
Martin Artnik c6648111f3 Code style fixes [SCI-5800] 2021-06-17 22:00:13 +02:00
Oleksii Kriuchykhin 1e3197875c Fix repositories selection in report wizard and deleted repositories handling [SCI-5831] 2021-06-17 16:23:27 +02:00
Martin Artnik 47071e23a1 Added specs for webhooks 2021-06-17 14:54:30 +02:00
Alex Kriuchykhin 4caa5f9ac1
Merge pull request #3394 from okriuchykhin/ok_SCI_5776_v2 
Fix repository snapshots for export all [SCI-5776]
 2021-06-17 11:35:16 +02:00
Martin Artnik 4ee50f87d5 Implement webhook service and scheduling jobs [SCI-5801, SCI-5802] 2021-06-17 09:19:04 +02:00
Oleksii Kriuchykhin 85a5cca98a Fix repository snapshots for export all [SCI-5776] 2021-06-16 16:17:12 +02:00
aignatov-bio 12d8b84cfd
Fix snapshots for deleted inventory [SCI-5826] (#3393) 2021-06-16 15:23:34 +02:00
aignatov-bio 7313b5fa16
Add archived and deleted repositories to reports [SCI-5781] (#3387) 
* Add archived and deleted repositories to reports [SCI-5781]

* Small markup fix [SCI-5781]
 2021-06-16 10:56:08 +02:00
Martin Artnik 6cf9ea5bc0 Implement Activity -> ActivityFilter matching service [SCI-5800] 2021-06-15 16:13:28 +02:00
aignatov-bio 9103fcf356
Add project header to reports [SCI-5798] (#3380) 2021-06-14 12:42:18 +02:00
aignatov-bio 0e87c44c4f
Fix empty elements in docx rtf table [SCI-5659] (#3382) 2021-06-14 12:41:34 +02:00
zmagoD 25802d7043 adopt move/clone my module logic to work with new user assignments (SCI-5805) 2021-06-12 18:51:55 +02:00
Martin Artnik c17192730e Lock repository_row before inserting RepositoryCell in SavePdfToInventoryItem [SCI-5794] 2021-06-09 15:44:38 +02:00
Miha Mencin 46e2adf2e3
Merge pull request #3334 from okriuchykhin/ok_SCI_5730 
Improve filtering for inventories [SCI-5730]
 2021-06-09 09:50:56 +02:00
Oleksii Kriuchykhin 16bad9eb9c Fix export all functionality [SCI-5776] 2021-06-08 14:21:34 +02:00
Miha Mencin ef77c9d67d
Merge pull request #3363 from okriuchykhin/ok_SCI_5774 
Fix dates formatting in report templates [SCI-5774]
 2021-05-31 14:23:19 +02:00
Oleksii Kriuchykhin 92821d7f1e Fix dates formatting in report templates [SCI-5774] 2021-05-31 11:51:04 +02:00
Alex Kriuchykhin cdbcbd0409
Merge pull request #3357 from okriuchykhin/ok_SCI_5751 
Fix deletion of old reports [SCI-5751]
 2021-05-28 13:59:36 +02:00
Oleksii Kriuchykhin 70f0535dbd Fix deletion of old reports [SCI-5751] 2021-05-27 16:31:58 +02:00
aignatov-bio 24f4f6cbb2 Fix report experiments sorting [SCI-5762] 2021-05-27 12:44:45 +02:00
Miha Mencin 30a116fc83
Merge pull request #3346 from okriuchykhin/ok_SCI_5735 
Refactor DOCX report generator [SCI-5735]
 2021-05-24 11:25:13 +02:00
aignatov-bio f576af078e Fix repository selection in report wizard [SCI-5749] 2021-05-24 09:40:50 +02:00
Oleksii Kriuchykhin 64ce35c8da Refactor DOCX report generator [SCI-5735] 2021-05-21 16:40:38 +02:00
Oleksii Kriuchykhin 29c83ffbb1 Merge branch 'develop' into features/new-reports 2021-05-21 11:04:17 +02:00
Oleksii Kriuchykhin 0ff1277dbf Improve filtering for inventories [SCI-5730] 2021-05-19 22:48:52 +02:00
zmagoD c23c01c01c remove user projects enpoints, fix the role name display 2021-05-16 12:03:16 +02:00
Oleksii Kriuchykhin c0ef2eef3c Improve report saving performance and error handling [SCI-5614] 2021-05-06 10:53:40 +02:00
Oleksii Kriuchykhin 1abc0dc1eb Fix tests [SCI-5636] 2021-05-03 13:03:26 +02:00
Oleksii Kriuchykhin bca88188de Limit created report relations depth to tasks [SCI-5665] 2021-04-28 15:33:30 +02:00
aignatov-bio 7c75f170d0
Add repositories settings to report wizard [SCI-5648] (#3269) 
* Add repositories settings to report wizard [SCI-5648]

* Move repositories from report settings to content [SCI-5648]
 2021-04-28 09:54:00 +02:00
aignatov-bio d18a54c874
Update create and update action for reports controller [SCI-5641] (#3260) 
Update create and update action [SCI-5641]
 2021-04-20 13:35:40 +02:00
Oleksii Kriuchykhin fe8f006f6e Fix save report PDF to Inventory [SCI-5613] 2021-04-14 16:06:59 +02:00
Oleksii Kriuchykhin 0a9a656313 Add flash message and notification for generated reports [SCI-5552] 2021-04-14 15:45:51 +02:00
miha 56ebc3dc07 [SCI-5635] add a migration to fix broken steps, fix the api so it sets last_modified_by_id, minor step model refactor 
migration fix

remove the conditoin for set_last_modified_by callback

set the last_modified_by_id in before_save callback (in case it is not set yet)

remove trailing spaces

Set last modified in protocl import service
 2021-04-12 09:59:00 +02:00
Oleksii Kriuchykhin f7c865974d Switch to graphviz gem [SCI-5596] 2021-03-25 17:42:57 +01:00
Oleksii Kriuchykhin ab9fd65a19 Add basic API client for BMT [SCI-5531] 2021-03-12 10:53:10 +01:00
aignatov-bio c6e4d6ef94 Fix activities multiple types selected [SCI-5546] 2021-03-10 12:59:02 +01:00
Urban Rotnik 8202181095
Merge pull request #3186 from urbanrotnik/ur-sci-4140-fix-notifications 
Bring back old notifications [SCI-4140]
 2021-03-09 14:54:08 +01:00
Urban Rotnik 8bacc74c17
Merge pull request #3187 from urbanrotnik/ur-sci-5439 
Fix report completed_on time and username [SCI-5439]
 2021-03-09 13:27:24 +01:00
Oleksii Kriuchykhin 2b5709e75f Improve behavior of the scheduler, add caching to system notifications sync service [SCI-5526] 2021-03-02 17:28:07 +01:00
aignatov-bio 0c5a1a3e21 Fix tests [SCI-5528] 2021-02-26 16:29:56 +01:00
Urban Rotnik 8ca8c84efd Fix report completed_on time and username (partially) 
SCI-5439
We cannot realy on last_modified_by, because it can be changed after step completion
 2021-02-25 13:24:21 +01:00
Urban Rotnik 1bb2393655 Use translations 
SCI-4140
 2021-02-25 11:59:26 +01:00
Oleksii Kriuchykhin e8b4a30b87 Improve inventory table loading speed [SCI-5509] 2021-02-22 10:34:06 +01:00
Alex Kriuchykhin d3e960fe2b
Merge pull request #3173 from okriuchykhin/ok_SCI_5494 
Multiple small bugfixes [SCI-5494]
 2021-02-18 14:35:40 +01:00
Oleksii Kriuchykhin 7d89088b14 Multiple small bugfixes [SCI-5494] 2021-02-18 13:55:03 +01:00
Urban Rotnik f29fd76822 Fix archived_on sorting 2021-02-18 09:42:17 +01:00
Urban Rotnik 933dcc93c7 Fix query with counts 2021-02-17 16:50:09 +01:00
aignatov-bio 4f8e15dbc6 Fix activities service [SCI-5485] 2021-02-15 10:23:32 +01:00
aignatov-bio 486dae7559 Add task counter to experiment card [SCI-5467] 2021-02-10 14:50:42 +01:00