scinote-eln/scinote-web
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363 commits

Author SHA1 Message Date
Oleksii Kriuchykhin 2c96f08b98 Refresh sidebar when project is archived/restored [SCI-2881] 2018-11-29 14:20:20 +01:00
Oleksii Kriuchykhin 5b566b48ae Improve error messages and fix task users/items endpoints [SCI-2886] 2018-11-28 14:14:45 +01:00
Oleksii Kriuchykhin b3a377f949 Return task inputs/outputs as references [SCI-2822] 2018-11-28 11:33:00 +01:00
mlorb 4b540958bd change close/cancel button and refactor export_project_modal endpoint 2018-11-16 13:37:32 +01:00
mlorb 6453ab6fb1 update the Export all confirmation modal and export interaction 2018-11-15 15:53:58 +01:00
Luka Murn e9c0b34662 Merge branch 'core-api' into 'master' 
Conflicts:
	Gemfile
	app/services/api.rb
	config/initializers/api.rb
	config/initializers/extends.rb
	config/routes.rb
	db/schema.rb
	spec/controllers/api/api_controller_spec.rb
 2018-11-14 16:59:04 +01:00
Luka Murn 84df2c81f9 Merge branch 'features/export-all' 
Conflicts:
	app/controllers/experiments_controller.rb
	app/controllers/my_modules_controller.rb
	db/schema.rb
 2018-11-13 09:14:02 +01:00
mlorb 0f8c80172e remove show protocol api endpoint 2018-10-29 11:21:48 +01:00
Oleksii Kriuchykhin 6d5af3da8f Remove error message for index page and unauthenticated users [SCI-2775] 2018-10-28 23:19:06 +01:00
Oleksii Kriuchykhin 02f536cd08 Merge latest features/export-all [SCI-2733] 2018-10-16 17:20:19 +02:00
Oleksii Kriuchykhin f6b039d54e Merge latest core-api branch [SCI-2765] 2018-10-16 12:07:47 +02:00
Jure Grabnar 26df1e5a98 Add export project modal 
Closes [SCI-2645]
 2018-10-16 11:00:38 +02:00
Luka Murn 1093ea11f4 Merge branch 'lm-api-fixes' of https://github.com/Ducz0r/scinote-web into Ducz0r-lm-api-fixes 
Conflicts:
	app/serializers/api/v1/activity_serializer.rb
	app/serializers/api/v1/inventory_column_serializer.rb
	app/serializers/api/v1/project_serializer.rb
 2018-10-15 15:20:26 +02:00
Luka Murn a217b11bba
Merge pull request #1298 from Zanz2/zz_projects_api_task_2539 
Created read endpoint for projects and related models [SCI-2539]
 2018-10-11 09:03:18 +02:00
Luka Murn dd4f7b5d02 Fix project users, activities, comments, reports endpoints 2018-10-10 17:35:09 +02:00
Oleksii Kriuchykhin af02f29fb5 Implement user state saving for projects overview [SCI-2733] 2018-10-10 16:15:31 +02:00
Alex Kriuchykhin 16b29b50a5
Merge pull request #1321 from okriuchykhin/ok_SCI_2731 
Add Projects view - list/table view [SCI-2731]
 2018-10-08 17:53:35 +02:00
Luka Murn 0bd3c81e39 Fix /users, /users/:id/identities endpoints 2018-10-07 13:07:27 +02:00
Luka Murn 7527dc7352 Fix READ index, READ show, POST create /tasks/:id/results endpoints 2018-10-07 12:58:17 +02:00
Luka Murn fc5cf33614 Fix GET /tasks/:id/activities endpoint 2018-10-07 11:54:11 +02:00
Luka Murn fca580face Fix GET /tasks/:id/inputs, GET /tasks/:id/outputs endpoints 2018-10-07 11:35:12 +02:00
Luka Murn 239b974fa0 Fix GET /tasks/:tid/protocols, GET /tasks/:tid/protocols/:id endpts 2018-10-07 11:29:56 +02:00
Luka Murn 24299ef4c0 Fix GET /tasks/:task_id/tags, GET /tasks/:task_id/tags/:id endpts 2018-10-07 11:10:41 +02:00
Luka Murn 98544f00e8 Fix GET /tasks/:task_id/users, GET /tasks/:task_id/users/1 endpts 2018-10-07 10:20:01 +02:00
Luka Murn f56e5b1e5a Update GET /task/:task_id/items, GET /task/:task_id/items/:id endpts 2018-10-07 10:07:37 +02:00
Luka Murn 0de3c7eb4e Update GET /tasks, GET /tasks/:id endpoints, refactor routes.rb 2018-10-07 09:45:24 +02:00
Jure Grabnar d7c875135e
Merge pull request #1304 from jbargu/jg_zipfile_structure 
Create zipfile structure for export all, implement inventory CSV for export [SCI-2640] [SCI-2642] [SCI-2643] [SCI-2644]
 2018-10-05 15:36:56 +02:00
Oleksii Kriuchykhin 0c452f519d Add CRUD endpoints for inventory cells [SCI-2765] 2018-10-05 00:18:42 +02:00
Oleksii Kriuchykhin 363c1e4a34 Add endpoints for managing inventory list items [SCI-2741] 2018-10-03 13:54:52 +02:00
Oleksii Kriuchykhin 492a5de19e Add Projects view - list/table view [SCI-2731] 2018-10-01 15:39:42 +02:00
Zanz2 c8ed808920 merged with core-api 2018-09-26 12:17:49 +02:00
Oleksii Kriuchykhin ab3aeac26b Merge latest core-api branch [SCI-2718] 2018-09-24 16:49:27 +02:00
Zanz2 8699761389
Merge pull request #1297 from Zanz2/zz_tasks_api_task_2667 
Created read endpoint for tasks, results and related data [SCI-2667] [SCI-2669]
 2018-09-24 15:31:47 +02:00
Oleksii Kriuchykhin 84428b37c2 Add project view JSON endpoints [SCI-2728] 2018-09-21 10:39:20 +02:00
Jure Grabnar 449aa12070 Refactor TeamZipExport code (move it into special file) 2018-09-16 20:28:26 +02:00
Oleksii Kriuchykhin 49e788a9ad Mergre latest core-api [SCI-2515] 2018-09-14 10:24:05 +02:00
Oleksii Kriuchykhin acc00ff3b9 Add CREATE Result endpoint: Create Text result [SCI-2718] 2018-09-13 13:38:11 +02:00
Zanz2 e47acfb4a1 Fixed attribute names 2018-09-13 11:57:31 +02:00
Zanz2 7f704c07e3 Created base endpoints for projects and related models 2018-09-13 11:37:07 +02:00
Zanz2 dace81f724 created base projects endpoint 2018-09-13 11:37:07 +02:00
Zanz2 5f39404e83 minor indendation fix 2018-09-13 11:25:25 +02:00
Zanz2 8a925008f9 fixed hound 2018-09-13 11:18:49 +02:00
Zanz2 bd49ea56c5 Added results endpoint 2018-09-13 11:16:34 +02:00
Zanz2 426bd129cc Added task inputs and outputs functionality 2018-09-13 11:14:22 +02:00
Zanz2 8d70764fe8 new routes for endpoints 2018-09-13 11:04:52 +02:00
Zanz2 c2d62667e4 fixed hound 2018-09-10 15:42:21 +02:00
Zanz2 4acc8f5719 fixes travis ci mistake 2018-09-07 12:54:09 +02:00
Zanz2 e64aee5db0 Completed the functionality for experiments and related endpoints 2018-09-07 11:58:02 +02:00
Zanz2 1589cfb1b2 saving work 2018-09-06 15:38:48 +02:00
Luka Murn 586a442abc Refactor the settings page, rename setting to tooltips_enabled 2018-09-05 16:36:32 +02:00
Zanz2 5ada21725f inital experiments api functionality 2018-09-05 09:55:04 +02:00
Oleksii Kriuchykhin 4d49671ae8 Add CRUD for inventories and columns [SCI-2690][SCI-2691][SCI-2692][SCI-2693][SCI-2694][SCI-2695] 2018-08-24 16:41:26 +02:00
Oleksii Kriuchykhin c8efa4bffc Add SHOW, UPDATE and DELETE inventory item endpoints [SCI-2688][SCI-2689] 2018-08-24 15:48:49 +02:00
Oleksii Kriuchykhin 5c2f268471 Refactor JSON API mime type registration [SCI-2687] 2018-08-24 15:48:10 +02:00
Oleksii Kriuchykhin 5488fc66fc Refactor JSON API mime type registration [SCI-2687] 2018-08-24 15:37:23 +02:00
Oleksii Kriuchykhin 490376513b Add inventory item CREATE endpoint [SCI-2687] 2018-08-24 15:36:19 +02:00
Oleksii Kriuchykhin c8abb3d9b8 Add user_identities CRUD endpoints, make API V1 togglable [SCI-2664][SCI-2686] 2018-08-24 15:27:59 +02:00
Alex Kriuchykhin eb2d3e7951
Merge pull request #1276 from okriuchykhin/ok_SCI_2613 
Add READ user endpoint [SCI-2613]
 2018-08-24 15:23:05 +02:00
Oleksii Kriuchykhin 0322316d74 Make API V1 togglable [SCI-2686] 2018-08-24 12:11:28 +02:00
Oleksii Kriuchykhin a8013118d4 Add READ user endpoint [SCI-2613] 2018-08-21 13:56:14 +02:00
Oleksii Kriuchykhin ecde634a2c Add OAuth2 provider [SCI-2515] 2018-08-17 13:17:59 +02:00
Oleksii Kriuchykhin ef7e0ac489 Add GET inventory columns API endpoint [SCI-2615] 2018-08-08 17:31:37 +02:00
Oleksii Kriuchykhin 8d11e03d47 Add read inventories and inventory items endpoints [SCI-2614][SCI-2616][SCI-2617] 2018-08-08 17:01:49 +02:00
Oleksii Kriuchykhin 22e12d8fc3 Add GET teams and team API endpoints [SCI-2611][SCI-2612] 2018-07-31 13:40:27 +02:00
Oleksii Kriuchykhin 26b0bd9e11 Refactor tasks tree API endpoint [SCI-2609] 2018-07-30 14:48:11 +02:00
zmagod f8ac083d39 adds an additional check if some other user has added/removed repository columns [fixes SCI-2408] 2018-06-12 15:28:03 +02:00
zmagod ca0c8cbb71 fixes typos, fixes pdf rendering 2018-05-17 11:21:34 +02:00
zmagod 4573655ec8 adds save PDF report to inventory feature [fixes SCI-2371] 2018-05-16 09:31:19 +02:00
Zmago Devetak 0a4deeaa35
Merge pull request #1112 from ZmagoD/zd_SCI_2261 
propagate assigned repository items in workflow [fixes SCI-2261]
 2018-05-10 09:57:49 +02:00
zmagod e9642cadad Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2304 2018-04-26 14:26:30 +02:00
zmagod 8dac887f10 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2261 2018-04-26 14:18:41 +02:00
Luka Murn cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
zmagod 503ad1ba20 removes samples from views [fixes SCI-2304] 2018-04-24 08:26:55 +02:00
zmagod 824962c084 propagate assigned repository items in workflow [fixes SCI-2261] 2018-04-23 11:33:16 +02:00
zmagod dafa29d4bf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2124 2018-04-20 10:33:15 +02:00
Zmago Devetak 1290435372
Merge pull request #1086 from ZmagoD/zd_SCI_2207 
enables copying of repository items [fixes SCI-2207]
 2018-04-19 17:13:43 +02:00
zmagod 9d282d1800 adds new reports index page [fixes SCI-2124] 2018-04-18 16:47:52 +02:00
Luka Murn 9bf8b5d864 Merge branch 'ok_SCI_1860' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_1860 
Conflicts:
	Makefile
	app/assets/javascripts/projects/index.js.erb
	app/assets/stylesheets/themes/scinote.scss
	config/locales/en.yml
 2018-04-12 13:16:46 +02:00
zmagod 6291857bbf enables copying of repository items [fixes SCI-2207] 2018-04-11 17:17:19 +02:00
zmagod ea4bd8831f fixes bug with CSRF on file upload, fixes turbolink issues with remote form submition [fixes SCI-2284] 2018-04-10 13:19:53 +02:00
Zmago Devetak bdb6554870
Merge pull request #1049 from ZmagoD/zd_SCI_2218_2219 
adds manage columns page
 2018-04-06 17:06:28 +02:00
zmagod cf7761daaa Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into ok_SCI_2223 2018-04-06 12:56:39 +02:00
zmagod a8a19df06d Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-05 08:51:58 +02:00
zmagod 0c05c60ebf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-04 16:06:38 +02:00
Oleksii Kriuchykhin 3b7977ee3b Merge latest changes from ux-release-1 [SCI-2217] 2018-04-04 14:20:34 +02:00
Oleksii Kriuchykhin 51860652c1 Refactor smart annotations modal [SCI-2223] 2018-04-02 20:38:56 +02:00
Oleksii Kriuchykhin cc5d8550b1 Refactor file preview modal [SCI-2217] 2018-03-30 11:50:28 +02:00
zmagod baf69461f5 adds edit/create modal and related actions 2018-03-23 16:00:33 +01:00
zmagod 3be3c00574 adds manage columns page [fixes SCI-2218] 2018-03-22 09:35:36 +01:00
zmagod 62858bc14f Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-03-20 14:46:11 +01:00
zmagod 1ad8c259d1 add blank page for repositories [fixes SCI-2139] 2018-03-20 14:45:57 +01:00
Oleksii Kriuchykhin a105e61d48 Remove tutorial [SCI-1860] 2018-03-18 13:18:05 +01:00
zmagod 1cdba5e0d3 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2068 2018-03-16 11:05:16 +01:00
zmagod c2eb6d6900 fixes hound adds specs to repository_list_items controller 2018-03-16 10:53:05 +01:00
zmagod d69754af04 implement search on list items dropdown, update, create actions [fixes SCI-2070] 2018-03-15 15:43:16 +01:00
zmagod dd2f7dd417 Merge branch 'master' of https://github.com/biosistemika/scinote-web into samples_to_repositories_table_migration 2018-03-13 13:24:36 +01:00
zmagod fb66131e29 setup endpoint for repository_rows paging/search 2018-03-06 16:32:39 +01:00
mlorb f5949e9d10 refactor 2018-03-01 17:52:24 +01:00
mlorb e66eab7f57 fix typo 2018-03-01 09:45:52 +01:00
mlorb 9199f287ba fix hound 2018-03-01 09:18:36 +01:00
mlorb 08439e7f58 sign up with linkedIn account 2018-02-28 18:12:21 +01:00
zmagod e3ca782996 add info modal for repository items [fixes SCI-2066] 2018-02-27 16:21:46 +01:00
zmagod 029d69b033 revert to old setting [fixes SCI-1967] 2018-01-29 15:42:22 +01:00
okriuchykhin 0b1f43c1c5
Merge pull request #954 from okriuchykhin/ok_SCI_1970 
Add health check endpoint to API controller [SCI-1970]
 2018-01-25 14:33:37 +01:00
zmagod f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
Oleksii Kriuchykhin 28be7c4fc4 Add health check endpoint to API controller [SCI-1970] 2018-01-22 16:52:48 +01:00
zmagod c07f54a0c7 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1854 2018-01-08 08:38:14 +01:00
mlorb a3a494c3a2 fix banana: remove dead code which strangely reappeared, probably with some rebasing 2017-12-14 14:18:15 +01:00
zmagod b106545d31 fixes per @duco 's request 2017-12-13 08:57:50 +01:00
zmagod b6a5ab5e6c fix request 2017-12-01 17:29:46 +01:00
zmagod 52b278fe78 adds premissions service to FE 2017-12-01 17:15:15 +01:00
Oleksii Kriuchykhin 84f4aba213 Pull latest master into gilson-iot-rails4 2017-11-15 15:15:26 +01:00
mlorb cd6799d571
Merge pull request #866 from biosistemika/protocols-io-import 
Protocols io import
 2017-11-13 11:53:28 +01:00
zmagod 327e27e123 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1576 2017-11-09 15:55:10 +01:00
zmagod 33ebe1f748 integration tests for forgot_password [fixes SCI-1576] 2017-11-08 16:23:52 +01:00
zmagod 2118b31762 adds about sciNote modal 2017-11-02 13:23:57 +01:00
zmagod e5a01f7a57 adds integration tests for about sciNote modal 2017-10-27 16:37:42 +02:00
Luka Murn 4e06b5c397 Revert "Revert "Add Add-ons page to User -> Settings -> Account [SCI-1675]"" 2017-10-17 13:17:49 +02:00
Luka Murn 4d8f2665d3 Revert "Add Add-ons page to User -> Settings -> Account [SCI-1675]" 2017-10-17 13:10:02 +02:00
Luka Murn fe89b942e7 Add Add-ons page to User -> Settings -> Account 
Closes SCI-1675.
 2017-10-11 14:15:37 +02:00
Zanz2 66e5004e60 Changed import text to be inside en.yml, as said in the code review, deleted some blank lines 2017-10-07 15:56:43 +02:00
zmagod 84f279de22 setup flow 2017-10-04 09:16:17 +02:00
Zanz2 11b2ef3112 Made code nicer, hopefully not unintentionally breaking something 2017-09-25 13:53:32 +02:00
mlorb 48c8922604 adds invite users modal 2017-09-21 10:45:35 +02:00
Luka Murn 80c05e50ec Semi-working version of create new team form 2017-09-19 16:30:26 +02:00
Zanz2 7aba782639 optimised code so i dont need javascript locals anymore and working to fix infamous html tags bug where second modal doesnt show 2017-09-19 15:02:16 +02:00
zmagod d1477179b2 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1499 2017-09-18 15:10:52 +02:00
Zanz2 f861b1fc52 Configured the controller,the main task ahead is to figure out how to import all of the data i have available 2017-09-15 15:52:55 +02:00
Toni Dezman d38f4343f2 Decupling redux part 1 2017-09-14 11:46:49 +02:00
zmagod 705d07f60e adds remove team action 2017-09-13 17:11:51 +02:00
Zanz2 b7432b336a added file upload popup modal, rails routes and controller functions, deleted old standalone model and controller 2017-09-13 15:15:08 +02:00
zmagod 1b3b3dfea9 adds team members update role functionality 2017-09-12 17:30:13 +02:00
Toni Dezman 185039bc99 adds suggestions from code review 2017-09-04 15:00:26 +02:00
zmagod 91d2d8a935 adds team details view 2017-08-31 15:56:55 +02:00
Toni Dezman c3f46d4877 adds hounds suggestions on improving the code 2017-08-31 13:24:57 +02:00
Toni Dezman 77a6a99513 fixes 404 request error 2017-08-31 13:03:15 +02:00
Toni Dezman 4034400c42 Merge branch 'decoupling-settings-page' into td_SCI_1565 2017-08-31 11:42:15 +02:00
Toni Dezman 8b61fe563c user preferences APIs 2017-08-31 11:23:44 +02:00
Toni Dezman 2e6a942152 api for timezone 2017-08-30 14:59:17 +02:00
Oleksii Kriuchykhin c3fceb90df Backport API to Rails-4 [SCI-1579] 2017-08-30 13:30:41 +02:00
zmagod ee054f91b8 adds bullet gem [fixes SCI-1578] 2017-08-30 09:29:45 +02:00
Toni Dezman ea9a195f09 email and password action/redusers work 2017-08-26 14:07:31 +02:00
Toni Dezman ccd14f6b50 adds apis for full_name and initials input fields 2017-08-25 14:45:02 +02:00
zmagod 782daabce1 first run 2017-08-25 08:54:32 +02:00
Toni Dezman e4a704d063 namespaces client_api/users/user_controller.rb 2017-08-25 08:21:52 +02:00
Toni Dezman 692df427b2 adds wildcard for settings/*all to show react 404 page 2017-08-22 10:35:18 +02:00
zmagod c5e32c4ea0 Merge branch 'rails-5.1' of https://github.com/biosistemika/scinote-web into merge-rails-5.1-branch 2017-08-21 09:52:14 +02:00
zmagod bd352869a3 adds user account dropdown 2017-08-09 09:08:13 +02:00
zmagod 226458a3f0 adds recent notifications 2017-08-08 15:44:28 +02:00
zmagod c314bae28d add team switch js/controller 2017-08-03 16:03:15 +02:00