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819 commits

Author SHA1 Message Date
Martin Artnik 618f5cfb53 Code style fixes [SCI-5800] 2021-06-30 13:08:16 +02:00
Martin Artnik c6648111f3 Code style fixes [SCI-5800] 2021-06-17 22:00:13 +02:00
Martin Artnik 47071e23a1 Added specs for webhooks 2021-06-17 14:54:30 +02:00
Martin Artnik 4ee50f87d5 Implement webhook service and scheduling jobs [SCI-5801, SCI-5802] 2021-06-17 09:19:04 +02:00
Oleksii Kriuchykhin 7537542c0a Fix API date time serializers [SCI-5816] 2021-06-15 17:12:55 +02:00
zmagoD 7e4f47f667 update experiment and my_module search 2021-06-12 10:27:53 +02:00
zmagoD 8997ba10d1 mark user assigmetns when they are created manually or automatically 2021-06-12 09:36:41 +02:00
Oleksii Kriuchykhin 86fcda3c09 Fix date formatting for the API [SCI-5785] 2021-06-07 10:34:58 +02:00
zmagoD fc7214c2f7 add test scenarios for user assignments propagation jobs 2021-06-06 11:46:16 +02:00
zmagoD 784e43e328 create user_assignments for all child objects when the user is attached to the project 2021-06-06 09:54:47 +02:00
zmagoD 3d79dd32ad update endpoint type 2021-05-31 21:48:18 +02:00
zmagoD debff7bc85 fix code style 2021-05-29 19:25:46 +02:00
zmagoD ffaf141abf fix failing scenarios 2021-05-29 18:40:26 +02:00
zmagoD f1c3bf7cf6 fix failng scenarios and remove uneeded code 2021-05-29 17:25:20 +02:00
zmagoD 28cb7ee81d add user roles enpoint and update scenarios 2021-05-29 15:28:10 +02:00
zmagoD 7e6789200a fix new API endpoints and add test cases 2021-05-23 17:31:02 +02:00
zmagoD 300c1521fd add new API endpoints and fix/update ExperimentMember and MyModuleMember modules 2021-05-22 18:36:30 +02:00
zmagoD be94cb09c2 fix code style 2021-05-22 14:41:56 +02:00
zmagoD 67cf09e030 log activities on experiment and my_module assignment change 2021-05-22 13:59:27 +02:00
Oleksii Kriuchykhin 29c83ffbb1 Merge branch 'develop' into features/new-reports 2021-05-21 11:04:17 +02:00
zmagoD 6910eafa37 remove uneeded spec 2021-05-16 12:03:59 +02:00
zmagoD de4c28069a fix experiment level styling issues and update the dropdown placeholerds 2021-05-16 11:04:04 +02:00
zmagoD 5ee38966a0 Merge branch 'features/new_permissions' of https://github.com/biosistemika/scinote-web into new_perimssions-managing-project-ui 2021-05-11 08:36:39 +02:00
zmagoD ab47c8695f add read permission and controller tests for new endpoints 2021-05-09 18:23:50 +02:00
zmagoD c0eb38b564 Merge branch 'develop' of https://github.com/biosistemika/scinote-web into features/new_permissions 2021-05-08 10:33:43 +02:00
miha 47f64fb711 Update the tests for 2fa 2021-05-05 10:40:52 +02:00
Oleksii Kriuchykhin 1abc0dc1eb Fix tests [SCI-5636] 2021-05-03 13:03:26 +02:00
zmagoD c1d98f421d update scenarios and UI logic to handle project page reload after modal close 2021-05-02 11:22:59 +02:00
zmagoD 3333241c9a add CTA for project members modal SCI-5645 2021-04-18 12:23:29 +02:00
miha 56ebc3dc07 [SCI-5635] add a migration to fix broken steps, fix the api so it sets last_modified_by_id, minor step model refactor 
migration fix

remove the conditoin for set_last_modified_by callback

set the last_modified_by_id in before_save callback (in case it is not set yet)

remove trailing spaces

Set last modified in protocl import service
 2021-04-12 09:59:00 +02:00
Oleksii Kriuchykhin 2b2b6f7774 Fix for API float parsing in the inventory number type column [SCI-5604] 2021-03-29 15:59:24 +02:00
miha 3cc4326eb7 fix code style 2021-03-29 10:59:38 +02:00
miha 8f0713229a add basic tests 2021-03-29 10:52:02 +02:00
aignatov-bio 0c5a1a3e21 Fix tests [SCI-5528] 2021-02-26 16:29:56 +01:00
Oleksii Kriuchykhin 7d89088b14 Multiple small bugfixes [SCI-5494] 2021-02-18 13:55:03 +01:00
Miha Mencin 107b7a0427
Merge pull request #3114 from urbanrotnik/ur-sci-5417-folders-name-uniquness-scope 
Add Archived to ProjectFolder name uniqueness scope [SCI-5417]
 2021-02-05 09:59:40 +01:00
Oleksii Kriuchykhin 1e3e701788 Add models for new permissions objects [SCI-5434] 2021-02-04 14:08:20 +01:00
Oleksii Kriuchykhin 324c268594 Remove Demo project and Samples repository [SCI-5246][SCI-5248] 2021-02-01 15:02:06 +01:00
aignatov-bio 8be9d3b14c
Merge pull request #3126 from biosistemika/features/new-experiments-page 
Features/new experiments page
 2021-01-29 13:28:11 +01:00
Oleksii Kriuchykhin 75da67b937 Update Rails to 6.1.1, ruby to 2.7.2 [SCI-5459] 2021-01-28 14:43:45 +01:00
Alex Kriuchykhin f1124f9ea0
Add experiments overview service [SCI-5430] (#3116) 2021-01-28 12:57:04 +01:00
Urban Rotnik ebbbfa657c
Fix folders activities [SCI-5402] [SCI-5403] (#3112) 
* Fix activities and make folders clickable

* Remove archive project activity and action

* Save nil value for root folder

* Add empty values to hash
 2021-01-22 11:24:08 +01:00
Urban Rotnik 68ac663370 Add Archived to ProjectFolder name uniqueness scope 
SCI-5417
 2021-01-22 08:56:43 +01:00
Urban Rotnik 91f016939d Fix tests for result deletion 
SCI-5429
 2021-01-20 09:17:02 +01:00
Urban Rotnik 60a1e602e0 Add ProjectFolders relation to Folder serializer 2021-01-12 17:09:39 +01:00
Urban Rotnik 1070e813fc Add helper for archived_on date 2021-01-12 15:35:35 +01:00
Urban Rotnik 2a3bafd6a0 Add fallback archived_on and archived_by columns to parent for MyModule and Experiment [SCI-5362] 2021-01-12 14:53:06 +01:00
Urban Rotnik f478ad91c3
Merge pull request #3058 from urbanrotnik/ur-sci-5312 
Folder name uniqueness validation on folder level and renaming [SCI-5312]
 2021-01-08 10:40:52 +01:00
Urban Rotnik fbce70be0c Add unique validation and ensure_uniqueness callback while moving folder 
[SCI-5312]
 2021-01-08 08:21:09 +01:00
Urban Rotnik be2949b316 Fix tests 2021-01-08 08:05:05 +01:00
Urban Rotnik 427b5d7107
Merge pull request #3059 from biosistemika/features/folders 
Features/folders into develop
 2021-01-08 06:26:44 +01:00
Urban Rotnik 20acd9b693 Fix controller and tests 2021-01-07 17:41:39 +01:00
Oleksii Kriuchykhin 58cce0f153 Improve task restoring and refactor flash messages [SCI-5341] 2021-01-04 17:00:23 +01:00
Urban Rotnik 4ff1770d50 Remove uniqueness validation on Experiment name 
SCI-5288
 2020-12-18 16:48:50 +01:00
Oleksii Kriuchykhin 67b3f853d7 Merge branch 'develop' into features/folders 2020-12-18 14:51:21 +01:00
Urban Rotnik ad8cf8a1fa Refactor result permissions 2020-12-14 12:50:54 +01:00
Oleksii Kriuchykhin 94b6c96e48 Remove the 'Archived tasks' tab and refactor sidebar to include archived [SCI-5273] 2020-12-12 22:46:30 +01:00
Urban Rotnik 1332ad2fcd Fix project creation activity [SCI-5181] 2020-12-04 14:13:43 +01:00
Urban Rotnik 7773afbcdb Add activities for Project Folders [SCI-5181] 2020-12-04 12:03:49 +01:00
Alex Kriuchykhin 92d579ab8e
Merge pull request #2935 from okriuchykhin/ok_SCI_5135 
Generate backend for moving the projects and folders [SCI-5135]
 2020-12-02 14:59:01 +01:00
Urban Rotnik 87b5552b27 Add equals team validations for project and folder 2020-12-02 14:53:46 +01:00
Urban Rotnik df2b8ab3df Remove jsonapi_parameters gem, accept rails params in controller 2020-12-02 13:15:49 +01:00
Urban Rotnik 7c1a0a9044 Add projects to project_folder serializer 2020-12-02 13:15:49 +01:00
Urban Rotnik 97733498d9 Include project_folders at Projects API endpoints 2020-12-02 13:15:48 +01:00
Urban Rotnik a4fc01d595 Add jsonapi_parameters gem, use relationships for parent_folder relation 2020-12-02 13:15:48 +01:00
Urban Rotnik 088fa79874 Add Project Folders API endpoints 2020-12-02 13:15:48 +01:00
Oleksii Kriuchykhin dfce57d481 Generate backend for moving the projects and folders [SCI-5135] 2020-12-02 12:11:01 +01:00
Alex Kriuchykhin 7b17d9d54d
Merge pull request #2971 from okriuchykhin/ok_SCI_5238 
Improve limit check for repository list and checklist items [SCI-5238]
 2020-11-30 19:59:46 +01:00
Oleksii Kriuchykhin 8ee1580ae4 Fix tests for repository list and checklist items [SCI-5238] 2020-11-27 14:59:17 +01:00
Urban Rotnik 5717e37f2b Remove obsolete code, fix tests 2020-11-25 18:34:46 +01:00
Oleksii Kriuchykhin eafc4cf367 Fix permission check for archived tasks [SCI-5235] 2020-11-20 14:39:17 +01:00
Oleksii Kriuchykhin 038cd8d5d7 Fix repository state columns handling [SCI-5190] 2020-11-10 17:24:04 +01:00
Alex Kriuchykhin 8566d56b68
Merge pull request #2928 from okriuchykhin/ok_SCI_5126 
Create database structure for project folders [SCI-5126]
 2020-11-02 11:46:15 +01:00
Oleksii Kriuchykhin bb1d9e883f Add ProjectFolder factory and specs [SCI-5126] 2020-11-01 23:07:57 +01:00
Urban Rotnik f5118e5461
Merge pull request #2901 from okriuchykhin/ok_SCI_5063 
Refactor experiment workflow image generation [SCI-5063]
 2020-10-29 13:55:23 +01:00
Urban Rotnik c6a891bcea
Merge pull request #2912 from urbanrotnik/ur-sci-5091 
Add current team to smart annotations permission check [SCI-5091]
 2020-10-29 13:32:29 +01:00
Oleksii Kriuchykhin 13fcfedf41 Refactor experiment workflow image generation [SCI-5063] 2020-10-29 13:16:09 +01:00
Urban Rotnik 25d050cec4 Add current team to smar annotations permission check 2020-10-29 12:17:40 +01:00
Urban Rotnik b94a3a6cb8 Clean up controller 2020-10-26 16:17:39 +01:00
Urban Rotnik aa1520bfb8 Merge branch 'develop' into jg_sci_2228 2020-10-22 14:21:39 +02:00
Urban Rotnik a19e0ef846 Refactor 2020-10-13 14:23:39 +02:00
Urban Rotnik dfca798e2d Refactored tiny_mce_table parser and renderer 2020-10-09 09:43:36 +02:00
Urban Rotnik 92b4d95c72 Implement lists in DOCX 2020-10-09 09:43:00 +02:00
Alex Kriuchykhin 3eb448c39b
Merge pull request #2862 from okriuchykhin/ok_SCI_5001 
Add Endpoins for Project Membership manipulation [SCI-5001]
 2020-09-25 14:25:20 +02:00
Urban Rotnik a9d8d008a3 Fix tests 2020-09-23 13:05:17 +02:00
Oleksii Kriuchykhin 2cda80dc5f Add Endpoins for Project Membership manipulation [SCI-5001] 2020-09-23 11:03:29 +02:00
Alex Kriuchykhin 136ce06022
Merge pull request #2851 from okriuchykhin/ok_SCI_4999 
Add Create and Update endpoints for experiments [SCI-4999]
 2020-09-22 10:20:00 +02:00
Alex Kriuchykhin e19efe3975
Merge pull request #2850 from okriuchykhin/ok_SCI_4997 
Add Create and Update endpoints for projects [SCI-4997]
 2020-09-21 13:22:12 +02:00
aignatov-bio e5d3fac112 Merge branch 'features/smart-annotation-improvements' into develop 2020-09-17 14:52:51 +02:00
aignatov-bio 6ed8757eb1 Merge branch 'features/task-flows' into develop 2020-09-17 14:52:05 +02:00
Oleksii Kriuchykhin 0147e1aee1 Add Create and Update endpoints for experiments [SCI-4999] 2020-09-16 23:15:36 +02:00
Oleksii Kriuchykhin dd4a62bb45 Add Create and Update endpoints for projects [SCI-4997] 2020-09-16 17:03:39 +02:00
Oleksii Kriuchykhin 57716fd89c Fix API and tests for new task completion logic [SCI-5004] 2020-09-15 11:19:25 +02:00
Urban Rotnik 0ae39678d4
Merge pull request #2832 from urbanrotnik/ur-sci-4982-lock-state 
Add error message for locked task, update some permission checks[SCI-4982]
 2020-09-09 14:04:08 +02:00
Urban Rotnik 45a09e5a3c Fix tests 2020-09-09 13:17:07 +02:00
Alex Kriuchykhin c413ac21a1
Merge pull request #2798 from aignatov-bio/ai-sci-4831-update-api-for-new-statuses 
Add API endpoints for workflows [SCI-4831]
 2020-09-08 16:23:05 +02:00
aignatov-bio 97db1e0e1c Fix tests 2020-09-08 14:57:26 +02:00
Mojca Lorber 0eb81065b3 Fix tests 2020-09-08 09:39:15 +02:00
aignatov-bio 4c7312faf9 Add tests for new workflow endpoints 2020-09-02 11:43:00 +02:00
aignatov-bio e1229f5606 Fix test and status validations 2020-09-01 14:49:58 +02:00
Urban Rotnik 581cd69963 Add activities for status change 2020-09-01 11:48:04 +02:00
Urban Rotnik b6e68ec1e2 Remove tests 2020-08-31 16:56:40 +02:00
Urban Rotnik a259800590 Merge branch 'develop' into jg_sci_2228 2020-08-31 16:29:23 +02:00
Urban Rotnik fb8f69c3e4 Revert controllers spec 2020-08-27 13:49:32 +02:00
Mojca Lorber 6fefd4d945 Add factories for new task flows models 2020-08-27 13:38:32 +02:00
Urban Rotnik a5fb873d19 Add default workflow 2020-08-27 10:54:39 +02:00
Oleksii Kriuchykhin ed2eb81c68 Switch to position swapping when updating step position [SCI-4880] 2020-08-25 15:46:23 +02:00
Urban Rotnik 7c14da70d9
Merge branch 'features/task-flows' into develop_to_task_flows 2020-08-04 14:50:46 +02:00
Alex Kriuchykhin 22015beeb5
Merge pull request #2757 from urbanrotnik/ur-sci-4813-base64-multipart-upload 
Extend asset API upload to support base64 [SCI-4813]
 2020-08-04 09:43:01 +02:00
Urban Rotnik 9b06510dcc Update PUT result file endpoint, refactor 2020-08-03 15:14:58 +02:00
Oleksii Kriuchykhin 1a8333612a Merge branch 'features/pwa' into develop 2020-07-27 09:47:41 +02:00
Urban Rotnik 4958139699 Extend asset API upload to support base64 2020-07-24 14:57:03 +02:00
Urban Rotnik 025378cd0e Fix translations and JS 2020-07-23 15:53:46 +02:00
Alex Kriuchykhin 26cfa001c8
Merge pull request #2747 from urbanrotnik/ur-sci-4769-canvas-test 
Add test for canvas_controller [SCI-4769]
 2020-07-23 15:18:01 +02:00
Urban Rotnik aecd6b228b
Merge pull request #2744 from urbanrotnik/ur-sci-4764-increase-characters-limit-for-rte 
Increase chars limit for RTE [SCI-4764]
 2020-07-23 12:58:36 +02:00
Urban Rotnik 512d6f3229 Add actions for update status, clean old complete actions 2020-07-22 16:12:34 +02:00
aignatov-bio ddfe8231d8 Merge branch 'features/2fa' into develop 2020-07-22 11:56:36 +02:00
Oleksii Kriuchykhin 809e0c7d77 Fix tests for MyModule [SCI_4825] 2020-07-21 16:20:19 +02:00
Urban Rotnik 3232b4d6bf Add test for canvas_controller 2020-07-21 13:49:59 +02:00
Urban Rotnik 9dffc27428 Increase chars limit for RTE 2020-07-20 13:33:38 +02:00
Oleksii Kriuchykhin 7fd004baa8 Prepare database structure and relations for statuses phase one [SCI-4825] 2020-07-17 18:04:09 +02:00
aignatov-bio cadbc3e47b Fix tests 2020-07-14 11:20:06 +02:00
Oleksii Kriuchykhin b4fab62d38 Merge branch 'develop' into ok_SCI_4776 2020-07-10 13:40:46 +02:00
Urban Rotnik b11f166c38 Fix cucumber tests 2020-07-09 13:14:07 +02:00
aignatov-bio 6245e19069
Merge pull request #2718 from biosistemika/master 
Merge master to develop
 2020-07-09 12:56:31 +02:00
mlorb 73e2654d78
Merge pull request #2701 from mlorb/ml-sci-4793 
Add empty states to inventories datatable and fix filtering bug [SCI-4793]
 2020-07-09 11:49:16 +02:00
aignatov-bio 13f7653667 Merge branch 'develop' into features/2fa 2020-07-07 13:05:45 +02:00
Oleksii Kriuchykhin 3af20c96c7 Fix tests and checklist item validation [SCI-4776] 2020-07-03 16:48:32 +02:00
Oleksii Kriuchykhin dc481cf236 Add API endpoints for checklists, checklist items, tables, API code improvements [SCI-4776] 2020-07-03 16:48:29 +02:00
Mojca Lorber a6b73a20fc Fix tests again 2020-07-03 13:18:30 +02:00
Mojca Lorber 47198c442d Fix tests 2020-07-02 17:32:26 +02:00
aignatov-bio 9b33cbc104 Rename ensure 2fa method 2020-07-02 11:24:33 +02:00
aignatov-bio 46256c89c9 Fix tests 2020-07-01 15:44:52 +02:00
aignatov-bio 4b9881e31e Add 2fa to user settings page 2020-07-01 13:25:06 +02:00
Urban Rotnik 62a4a5f203 Add 2fa login 2020-07-01 12:46:26 +02:00
Mojca Lorber 22b71bc9cb Merge branch 'develop' into ml-sci-4261 2020-06-30 13:47:32 +02:00
Urban Rotnik de8aca9dbd Rename column 2020-06-29 10:42:19 +02:00
Urban Rotnik 88f54b16d7 Add 2fa fields to user 2020-06-24 17:58:58 +02:00
Oleksii Kriuchykhin 7ea577d8d4 Merge branch 'features/inventory-archiving' into develop 2020-06-24 14:04:54 +02:00
Alex Kriuchykhin e1b862a332
Merge pull request #2679 from urbanrotnik/ur-sci-4741-api-endopints-update 
Filter out non active repositories and rows [SCI-4741]
 2020-06-24 12:51:13 +02:00
Urban Rotnik 2f4bf95373 Revert scrope 2020-06-24 11:42:59 +02:00
Urban Rotnik 8dc48e9f95 Remove archiving rows from RepositoryArchiveService 2020-06-24 10:35:24 +02:00
Urban Rotnik 91af7135c1 Update scopes for repository items 2020-06-23 18:24:46 +02:00
Urban Rotnik 6de322498b Delegate archived methods to parent repository 2020-06-23 17:16:02 +02:00
Urban Rotnik c565cbe579 Filter out non active repositories and rows 2020-06-23 10:23:22 +02:00
Urban Rotnik e89bf58e1c Refactory restore inventory service 2020-06-23 08:24:52 +02:00
Urban Rotnik d874b6f732 Refactory archive inventory service 2020-06-22 22:45:34 +02:00
Urban Rotnik 30de400cf9
Merge pull request #2676 from mlorb/ml-sci-4786 
Revert default_scope for active repositories [SCI-4786]
 2020-06-22 16:17:39 +02:00
Mojca Lorber be19190ff1 Revert default_scope for active repositories 2020-06-22 14:57:35 +02:00
aignatov-bio 593455537d Fix tests 2020-06-22 09:48:37 +02:00