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Author SHA1 Message Date
Oleksii Kriuchykhin 2e92500a73 Fix seeds to work with new UserRoles, fix Templates creation job [SCI-6270] 2021-11-15 21:36:06 +01:00
aignatov-bio 8f9ab4f6c3
Refactor permissions breadcrumbs for users [SCI-6260] (#3665) 
* Refactor permissions breadcrumbs for users [SCI-6260]

* Change creator assignments to automatically [SCI-6260]

Co-authored-by: Anton <anton@scinote.net>
 2021-11-15 15:02:22 +01:00
artoscinote 4ce0c53d36
Implemented reset role functionality [SCI-6261] (#3662) 
* Implemented reset role functionality [SCI-6261]

* Linter fixes [SCI-6261]
 2021-11-15 11:12:31 +01:00
artoscinote a6c61c2b4e
Fixed permission issues when moving experiment [SCI-6257] (#3655) 
* Fixed permission issues when moving experiment [SCI-6257]

* Copy fixes [SCI-6248]

* Use canaid helper instead of permission_granted [SCI-6257]

* Fixes [SCI-6257]
 2021-11-12 12:59:49 +01:00
Oleksii Kriuchykhin f73f9dd2c1 Fix activities for assigning to experiments and tasks [SCI-6254] 2021-11-11 21:30:30 +01:00
artoscinote 0eacb91bed
Renamed 'group_user_role', fixed public project migration [SCI-6234] (#3642) 
* Renamed 'group_user_role', fixed public project migration [SCI-6234]

* Moved public project update inside loop [SCI-6234]
 2021-11-10 09:52:37 +01:00
aignatov-bio 3372b679da
Change role assigning role on object creation [SCI-6247] (#3645) 
Co-authored-by: Anton <anton@scinote.net>
 2021-11-09 16:10:43 +01:00
artoscinote 083efd77fd
Generalize user role propagation job [SCI-6246] (#3649) 2021-11-09 16:09:12 +01:00
Alex Kriuchykhin 9a967cfe40
Fix user removal from the team [SCI-6201] (#3637) 2021-11-09 09:35:36 +01:00
Martin Artnik 81e7b80bae Fixed removal of user from team [SCI-6239] 2021-11-08 16:06:28 +01:00
artoscinote 3e3e2cc24e
Revert "Implement experiment and task access removal" [SCI-6218] (#3635) 
* Revert "Implement experiment and task access removal [SCI-6156] (#3614)"

This reverts commit 2abefd78e6.

* Rename assign to module activity to designate to my module [SCI-6218]
 2021-11-05 15:44:14 +01:00
Oleksii Kriuchykhin a99599efea Merge branch 'features/new_permissions' into develop 2021-10-29 15:16:30 +02:00
artoscinote 2abefd78e6
Implement experiment and task access removal [SCI-6156] (#3614) 2021-10-28 16:32:05 +02:00
Alex Kriuchykhin f8e433a0ca
Merge branch 'features/new_permissions' into ok_SCI_6151 2021-10-28 14:31:47 +02:00
Alex Kriuchykhin 1bde37db78
Merge branch 'develop' into ok_SCI_5579 2021-10-28 13:26:27 +02:00
Oleksii Kriuchykhin b1b7dbb8ef Improve code style [SCI-6151] 2021-10-28 12:58:42 +02:00
aignatov-bio 9e3d64bbb6
Fix projects list in clone experiment dropdowns [SCI-6139] (#3592) 
Co-authored-by: Anton <anton@scinote.net>
 2021-10-27 13:55:49 +02:00
aignatov-bio 22034089a6
Update experiment move service [SCI-6149] (#3599) 
* Update experiment move service [SCI-6149]

* Move permission check to helper [SCI-6149]

Co-authored-by: Anton <anton@scinote.net>
 2021-10-27 13:48:52 +02:00
aignatov-bio 7d6136435d
Change my_module owner after copy [SCI-6176] (#3611) 
Co-authored-by: Anton <anton@scinote.net>
 2021-10-26 12:06:35 +02:00
aignatov-bio 1a05c3a40c
Update canvas task cards [SCI-5021] (#3608) 
Co-authored-by: Anton <anton@scinote.net>
 2021-10-26 12:06:26 +02:00
Alex Kriuchykhin f6a30cac6c
Merge pull request #3593 from okriuchykhin/ok_SCI_6134 
Change Dashboard::RecentWorkService to use new user roles [SCI-6134]
 2021-10-26 11:43:54 +02:00
aignatov-bio edb09dd099
Update copy experiment permission checks [SCI-6147] (#3598) 
Co-authored-by: Anton <anton@scinote.net>
 2021-10-26 11:40:54 +02:00
Oleksii Kriuchykhin 2051ea5360 Update the search to abide the permissions [SCI-6151] 2021-10-22 11:43:20 +02:00
Martin Artnik 6249465b34 Fixed updating user assignment in MyModuleMember [SCI-6169] 2021-10-21 15:51:17 +02:00
artoscinote 3746332c30
Fixed cached user lists when changing assignments [SCI-6137] (#3597) 
Fixed cache invalidation for assignables, current_user missing in cache keys [SCI-6137]
 2021-10-19 16:00:52 +02:00
artoscinote c63090da8c
Fixed scopes and added permission checks to quick create services [SCI-6135] (#3584) 2021-10-14 13:13:29 +02:00
Oleksii Kriuchykhin bc806f0c86 Change Dashboard::RecentWorkService to use new user roles [SCI-6134] 2021-10-13 14:12:24 +02:00
Martin Artnik 6ea34adb22 Fixed designated users relation 2021-10-13 13:39:28 +02:00
artoscinote 5bda5acebc
Fixed the rule for moving experiment [SCI-6128] (#3587) 2021-10-13 13:32:11 +02:00
artoscinote 92fab5dd4f
Update usage of user_my_modules [SCI-6121] (#3585) 2021-10-13 10:10:14 +02:00
artoscinote 462f8ffc47
Fixed unassigned user methods, order by name [SCI-6104] (#3589) 2021-10-13 09:50:06 +02:00
artoscinote 0fe6cd66e5
Fix permission migration, fix assignable scope [SCI-6127] (#3580) 2021-10-05 13:45:52 +02:00
artoscinote 6fbb22922a
Fix project user assignment [SCI_5925] (#3577) 2021-10-05 13:45:34 +02:00
artoscinote a18839f529
Automatically assign team admins as project owners [SCI_6119] (#3575) 2021-10-04 15:47:28 +02:00
aignatov-bio 116c09cd8a
Update users selection for notifications [SCI-6110] (#3573) 2021-10-04 15:43:28 +02:00
aignatov-bio 982aaf887c
Fix duplicate objects on dashboard [SCI-5948] (#3576) 2021-10-04 15:41:35 +02:00
artoscinote 75d6a17cb7
Fix ProjectOverviewService and automatic project assignment [SCI_6117] (#3572) 2021-10-04 11:20:47 +02:00
Martin Artnik 4f4ab05740 Fix project search in quick start controller [SCI-5915] 2021-10-01 12:20:51 +02:00
aignatov-bio dba6ed8515 Use default repository table state [SCI-6089] 2021-09-30 13:30:17 +02:00
artoscinote f68d724202
Rework experiment permissions [SCI-6054] (#3538) 
* Rework experiment permissions [SCI-6054]
 2021-09-30 11:32:11 +02:00
Martin Artnik 49b9ee37cc Merge branch 'develop' into features/bmt-search 2021-09-24 11:01:27 +02:00
Oleksii Kriuchykhin f806a56cac Update existing roles with new permissions/abilities [SCI-6076] 2021-09-24 10:29:24 +02:00
artoscinote 895509a26c
Merge pull request #3543 from artoscinote/ma_SCI_6056 
Reworked MyModule permissions [SCI-6056]
 2021-09-17 15:19:01 +02:00
Martin Artnik 04413c6cc6 Make permission names consistent with spreadsheet [SCI-6056] 2021-09-17 10:41:28 +02:00
Oleksii Kriuchykhin 0762323337 Update/implement permission checks in the project related controllers [SCI-6042] 2021-09-15 14:39:47 +02:00
Martin Artnik e8f57e9e99 Reworked MyModule permissions [SCI-6056] 2021-09-14 11:08:35 +02:00
Alex Kriuchykhin 3ca593d7f9
Merge pull request #3513 from okriuchykhin/ok_SCI_5663 
Allow project management to it's creator if project has no assigned users [SCI-5663]
 2021-09-14 11:08:25 +02:00
Martin Artnik 975a8910a8 Updated project permission helpers [SCI-6041] 2021-09-07 11:27:52 +02:00
Martin Artnik ade1385392 Merge branch 'develop' into features/bmt-search 2021-09-06 10:51:04 +02:00
Martin Artnik 7e6ca3be8a Merge branch 'develop' into features/new_permissions 2021-09-06 10:33:32 +02:00
Alex Kriuchykhin a63f047ae7
Merge pull request #3512 from okriuchykhin/ok_SCI_6031 
Add configuration variable for webhooks, disable by default [SCI-6031]
 2021-08-30 15:35:38 +02:00
Miha Mencin 50d33896e3
Merge pull request #3480 from artoscinote/ma_SCI_5963 
Downcase all user emails, downcase when finding user [SCI-5963]
 2021-08-30 13:00:12 +02:00
Martin Artnik e08b406185 Added additionalDataFilter [SCI-6026] 2021-08-30 10:49:15 +02:00
aignatov-bio b269f3f612 Add saved filters backend [SCI-5977] (#3509) 
* Add saved filters backend [SCI-5977]

* Rework filter saving [SCI-5977]

Co-authored-by: Martin Artnik <martin@scinote.net>
 2021-08-30 10:49:15 +02:00
Oleksii Kriuchykhin d4ef2b1bd4 Add BMT inventory model [SCI-6009] 2021-08-30 10:49:15 +02:00
Oleksii Kriuchykhin 0b74f34de7 Add external IDs to repositories [SCI-5990] 2021-08-30 10:49:14 +02:00
Oleksii Kriuchykhin 4665743d02 Allow project management to it's creator if project has no assigned users [SCI-5663] 2021-08-26 16:56:21 +02:00
Oleksii Kriuchykhin d67f7691a1 Add configuration variable for webhooks, disable by default [SCI-6031] 2021-08-26 14:08:15 +02:00
artoscinote 295d27f0d7
Added option to override default OTP drift time [SCI-6027] (#3507) 2021-08-25 14:02:25 +02:00
Martin Artnik 143e491016 Fixed registering bioeddie molecule on step [SCI-5985] 2021-08-11 14:10:05 +02:00
Martin Artnik 5d5f406e9a Downcase all user emails, downcase when finding user [SCI-5963] 2021-08-11 13:18:58 +02:00
Martin Artnik 57d5e6c2a7 Merge branch 'develop' into features/barcodes 2021-08-03 13:36:36 +02:00
artoscinote f839cb5256
Merge pull request #3464 from biosistemika/features/bioeddie-integration 
Features/bioeddie integration
 2021-08-03 13:32:53 +02:00
artoscinote c41247a5fd
Merge pull request #3439 from artoscinote/ma_SCI_5879 
Implement Save & Register molecule [SCI-5879]
 2021-08-03 12:15:46 +02:00
Martin Artnik 13ddff89a8 Fixed Asset relation handling in activities [ma_SCI_5789] 2021-08-03 09:59:06 +02:00
Martin Artnik a82af505eb Merge branch 'develop' into features/webhooks 2021-08-02 16:22:52 +02:00
Martin Artnik ae174b276a Code review fixes and error handling improvements [SCI-5942] 2021-08-02 15:42:53 +02:00
Martin Artnik 123e415a4f Print status backend + FE integration [SCI-5942] 2021-08-02 15:42:53 +02:00
aignatov-bio a782ce50d1
Add bio eddie files to export all [SCI-5877] (#3426) 2021-08-02 13:27:02 +02:00
Martin Artnik e63a665140 Merge branch 'develop' into features/barcodes 2021-08-02 11:15:48 +02:00
Martin Artnik 0f417f9730 Merge branch 'develop' into features/barcodes 2021-07-29 13:32:17 +02:00
Martin Artnik 5c4f923854 Corrected type for 'assignment' activities [SCI-5662] 2021-07-29 10:13:28 +02:00
Martin Artnik 67f4e81a3a Merge branch 'develop' into features/new_permissions 2021-07-28 15:16:47 +02:00
Martin Artnik b41ee028ca Added overridable send permission method to notifications [SCI-5938] 2021-07-28 13:14:07 +02:00
Martin Artnik b32b207f3d Added FLUICS API client [SCI-5939] 2021-07-23 13:52:28 +02:00
Oleksii Kriuchykhin c26dcf4b23 Replace empty? with blank? [SCI-5579] 2021-07-23 11:56:28 +02:00
Martin Artnik 4bb080c25b Merge migrations, code fixes [SCI-5800] 2021-07-22 10:51:03 +02:00
Alex Kriuchykhin dfa2a7775d
Merge pull request #3422 from okriuchykhin/ok_SCI_5847 
Fix repository cell joining and preloading [SCI-5847]
 2021-07-21 13:18:21 +02:00
aignatov-bio 4de35c983a
Open HELM files in bio eddie [SCI-5890] (#3442) 2021-07-20 13:06:47 +02:00
Martin Artnik c43e1cfbe5 Fixed db error during build 2021-07-20 10:20:47 +02:00
artoscinote 3a281ce9dc
Merge pull request #3433 from artoscinote/ma_SCI_5607 
Also send notification to the user that was unassigned from task [SCI-5607]
 2021-07-20 09:41:46 +02:00
artoscinote 5f9c04844f
Added prefixed IDs to repository rows (items) [SCI-5909] (#3441) 
* Added prefixed IDs to repository rows (items) [SCI-5909]

* Fix prefixed id queries to work with joins, use subquery in repository search [SCI-5909]

* Fixed accessing repository_row parent code [SCI-5909]

* Better handling of repository_row code display [SCI-5909]

* Fix index warning for id prefixed models issue setting up project [SCI-5909]
 2021-07-19 14:23:36 +02:00
Martin Artnik a8f8ab8ba9 Implement label templates with default ZPL template [SCI-5902] 2021-07-19 09:44:14 +02:00
Martin Artnik 96a5b97bdb Implement Save & Register molecule [SCI-5879] 2021-07-15 12:37:04 +02:00
Martin Artnik 1985b7a7e0 Also send task unassign notification to the person that was unassigned [SCI-5607] 2021-07-13 12:11:49 +02:00
zmagoD 277da3abcf fix merge issues 2021-07-10 15:20:55 +02:00
Oleksii Kriuchykhin 549fc8e5a0 Fix repository cell joining and preloading [SCI-5847] 2021-07-07 17:43:51 +02:00
Martin Artnik fdf9c5f6ae Reset file_processing when new file is upladed [SCI-5870] 2021-07-07 14:57:35 +02:00
Oleksii Kriuchykhin d1208bad0b Merge branch 'develop' into features/new_permissions 2021-07-07 13:44:36 +02:00
artoscinote 723b594632
Merge pull request #3398 from artoscinote/ma_SCI_5828 
Expose experiment IDs in interface and reports [SCI-5828]
 2021-06-30 12:58:25 +02:00
Martin Artnik e1b0b65465 Improved code style, fixed bug [SCI-5828] 2021-06-29 15:57:23 +02:00
zmagoD 9c812e84bd setup logic to group assign all team members and handle the unassignments logic 2021-06-27 13:22:19 +02:00
Martin Artnik b2e2186d9f Remove unnecessary tasks hash from full export [SCI-5840] 2021-06-22 14:57:07 +02:00
Martin Artnik c4e6b0bbaf Fixed export all report html generation [SCI-5840] 2021-06-22 14:50:47 +02:00
Martin Artnik eaa713f5b8 Fix indices [SCI-5829] 2021-06-22 12:51:25 +02:00
zmagoD 9b87fce840 add read check to view methods 2021-06-20 11:11:03 +02:00
zmagoD ad10befcc4 add new manage access permission to PET levels 2021-06-19 17:17:57 +02:00
Martin Artnik 29ff910eba Added searching experiments by EX[ID] [SCI-5829] 2021-06-18 14:12:59 +02:00
Martin Artnik 0866a2e251 Added experiment ID to card and table views [SCI-5828] 2021-06-18 14:12:59 +02:00
Oleksii Kriuchykhin bb458abec6 Remove old reports code [SCI-5650] 2021-06-18 10:40:00 +02:00
Martin Artnik 47071e23a1 Added specs for webhooks 2021-06-17 14:54:30 +02:00
Martin Artnik 4ee50f87d5 Implement webhook service and scheduling jobs [SCI-5801, SCI-5802] 2021-06-17 09:19:04 +02:00
Oleksii Kriuchykhin 85a5cca98a Fix repository snapshots for export all [SCI-5776] 2021-06-16 16:17:12 +02:00
zmagoD 25802d7043 adopt move/clone my module logic to work with new user assignments (SCI-5805) 2021-06-12 18:51:55 +02:00
zmagoD 7128987418 fix code style 2021-06-12 10:58:26 +02:00
zmagoD 7e4f47f667 update experiment and my_module search 2021-06-12 10:27:53 +02:00
zmagoD 8997ba10d1 mark user assigmetns when they are created manually or automatically 2021-06-12 09:36:41 +02:00
aignatov-bio afe2a19c88
Add webhooks management [SCI-5767] (#3376) 
* Add webhooks managment [SCI-5767]

* Markup fixes [SCI-5676]
 2021-06-09 12:53:11 +02:00
Miha Mencin 48202c88d1
Merge pull request #3350 from aignatov-bio/ai-sci-5601-add-pdf-preview-for-docx-report 
Add pdf preview for docx reports [SCI-5601]
 2021-06-09 11:27:45 +02:00
aignatov-bio 16f83a3e60 Remove docx preview processing flag [SCI-5601] 2021-06-09 10:58:27 +02:00
Miha Mencin 46e2adf2e3
Merge pull request #3334 from okriuchykhin/ok_SCI_5730 
Improve filtering for inventories [SCI-5730]
 2021-06-09 09:50:56 +02:00
Oleksii Kriuchykhin 16bad9eb9c Fix export all functionality [SCI-5776] 2021-06-08 14:21:34 +02:00
zmagoD ddaa4b4c57 replase user_projects with user_assignment where the permissions are calculated 2021-06-06 10:29:01 +02:00
zmagoD 784e43e328 create user_assignments for all child objects when the user is attached to the project 2021-06-06 09:54:47 +02:00
aignatov-bio 3c7592657c Add activity filters [SCI-5765] 2021-05-31 13:39:10 +02:00
zmagoD debff7bc85 fix code style 2021-05-29 19:25:46 +02:00
Alex Kriuchykhin 6d56ea2ee0
Merge pull request #3358 from okriuchykhin/ok_SCI_5773 
Remove experiment from report if it is moved to another project [SCI-5773]
 2021-05-28 14:02:30 +02:00
Alex Kriuchykhin cdbcbd0409
Merge pull request #3357 from okriuchykhin/ok_SCI_5751 
Fix deletion of old reports [SCI-5751]
 2021-05-28 13:59:36 +02:00
Oleksii Kriuchykhin cc8cc595d7 Remove experiment from report if it is moved to another project [SCI-5773] 2021-05-28 11:31:45 +02:00
Oleksii Kriuchykhin 70f0535dbd Fix deletion of old reports [SCI-5751] 2021-05-27 16:31:58 +02:00
aignatov-bio 24f4f6cbb2 Fix report experiments sorting [SCI-5762] 2021-05-27 12:44:45 +02:00
aignatov-bio 2be59bf8b2 Add pdf preview for docx reports [SCI-5601] 2021-05-25 15:14:50 +02:00
Miha Mencin e675e4004e
Merge pull request #3348 from aignatov-bio/ai-sci-5753-fix-export-all 
Fast fix for export all [SCI-5753]
 2021-05-24 15:19:11 +02:00
aignatov-bio 2651e8ff35 Fast fix for export all [SCI-5753] 2021-05-24 13:16:43 +02:00
zmagoD 300c1521fd add new API endpoints and fix/update ExperimentMember and MyModuleMember modules 2021-05-22 18:36:30 +02:00
zmagoD be94cb09c2 fix code style 2021-05-22 14:41:56 +02:00
zmagoD 67cf09e030 log activities on experiment and my_module assignment change 2021-05-22 13:59:27 +02:00
Oleksii Kriuchykhin 64ce35c8da Refactor DOCX report generator [SCI-5735] 2021-05-21 16:40:38 +02:00
Oleksii Kriuchykhin 29c83ffbb1 Merge branch 'develop' into features/new-reports 2021-05-21 11:04:17 +02:00
Oleksii Kriuchykhin 7d9a79456a Remove task from report if it is moved to another experiment [SCI-5741] 2021-05-20 21:21:27 +02:00
Oleksii Kriuchykhin 0ff1277dbf Improve filtering for inventories [SCI-5730] 2021-05-19 22:48:52 +02:00
aignatov-bio 0b97ffe5c6 xRemove default value from pdf/docx_file_status [SCI-5728] 2021-05-18 15:24:13 +02:00
Miha Mencin 491dc22294
Merge pull request #3321 from okriuchykhin/ok_SCI_5724 
Fix default empty options for report wizard first page [SCI-5724]
 2021-05-17 10:28:57 +02:00
Miha Mencin d952edd389
Merge pull request #3316 from okriuchykhin/ok_SCI_5702 
Add generation error states to reports [SCI-5702]
 2021-05-17 10:16:06 +02:00
zmagoD c23c01c01c remove user projects enpoints, fix the role name display 2021-05-16 12:03:16 +02:00
zmagoD de4c28069a fix experiment level styling issues and update the dropdown placeholerds 2021-05-16 11:04:04 +02:00
Oleksii Kriuchykhin 167ebd3d58 Fix default selection of results in reports wizard [SCI-5726] 2021-05-13 15:44:06 +02:00
Oleksii Kriuchykhin 697809ff6a Fix default empty options for report wizard first page [SCI-5724] 2021-05-13 14:24:47 +02:00
aignatov-bio 3ba96be787 Remove report name uniqness [SCI-5718] 2021-05-12 14:56:22 +02:00
Oleksii Kriuchykhin a175e83a16 Add generation error states to reports [SCI-5702] 2021-05-11 14:52:02 +02:00
zmagoD 5ee38966a0 Merge branch 'features/new_permissions' of https://github.com/biosistemika/scinote-web into new_perimssions-managing-project-ui 2021-05-11 08:36:39 +02:00
zmagoD d145dd6d36 add my module assigments modals 2021-05-09 16:59:10 +02:00
zmagoD ac91d9c2c4 add assign user permission to experiment level 2021-05-08 18:06:07 +02:00
zmagoD c0eb38b564 Merge branch 'develop' of https://github.com/biosistemika/scinote-web into features/new_permissions 2021-05-08 10:33:43 +02:00
zmagoD 331a68e9b6 fix new experiment creation 2021-05-08 10:05:22 +02:00
Oleksii Kriuchykhin b67f2a21f5 Add default settings to existing reports [SCI-5619][SCI-5672] 2021-05-06 17:33:58 +02:00
zmagoD 47cb1b31dc fix code style 2021-05-02 11:36:10 +02:00
zmagoD c1d98f421d update scenarios and UI logic to handle project page reload after modal close 2021-05-02 11:22:59 +02:00
zmagoD 11e5662c47 add fe logic for disable/enable fields 2021-04-30 13:26:06 +02:00
zmagoD 8a74546cdf fix the logic for addin/editing new project members 2021-04-28 18:02:18 +02:00