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11355 commits 31 branches 181 tags 166 MiB
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342 commits

Author SHA1 Message Date
Mojca Lorber
989c10872c Fixes visual bugs on protocols.io and home page 2019-07-04 18:22:51 +02:00
aignatov-bio
52a2f5cd0e
Add recent protocols dropdown to task page [SCI-3417] (#1800) 
* Add recent protocols dropdown to task page
 2019-06-13 15:47:29 +02:00
aignatov-bio
2de2ead723
Refactor avatar image appearance across Scinote [SCI-3482] (#1787) 
* Refactor avatar appearance across Scinote
 2019-05-21 15:19:44 +02:00
aignatov-bio
f970eea525
Some gui fixes (#1757) 2019-05-14 09:43:02 +02:00
aignatov-bio
71b3228310
Update protocol preview style [SCI-3416] (#1729) 
* Update protocol appearance
 2019-05-13 10:45:12 +02:00
Urban Rotnik
11a7a975af Merge branch 'features/scinote-improvements' into master-with-note-section 2019-04-23 14:50:03 +02:00
Anton Ignatov
aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
aignatov-bio
6b45dcd475
Update eln export for new tinyMCE image format (#1680) 2019-04-19 14:44:40 +02:00
Urban Rotnik
a3932cc67f New asset box style update 2019-04-09 14:17:40 +02:00
Urban Rotnik
26cf8271a1 Change step header, remove vertical line 2019-04-05 10:57:38 +02:00
Miha Mencin
1b19e67c07 Revert "Step header changes, removed vertical line" 
This reverts commit b0f0ded87d.
 2019-03-27 10:21:40 +01:00
Urban Rotnik
b0f0ded87d Step header changes, removed vertical line 
SCI-3134
 2019-03-25 17:25:13 +01:00
Oleksii Kriuchykhin
ded74044de Fix circle icon in image editor [SCI-2855] 2019-03-11 15:10:38 +01:00
Oleksii Kriuchykhin
80e525fd97 Improve image editor behaviour [SCI-2855] 2019-03-11 15:09:49 +01:00
Oleksii Kriuchykhin
89e968c410 Add tui.image-editor [SCI-2815] 2019-03-11 15:08:15 +01:00
Mojca Lorber
ebfacdd62c change experiments title color 2019-02-19 14:24:23 +01:00
aignatov-bio
fcdb4e7a92
Merge pull request #1500 from biosistemika/features/system-notifications 
Features/system notifications
 2019-02-19 13:51:18 +01:00
aignatov-bio
8e905b67b2
System notification navbar menu drop down [SCI 2955] (#1498) 
* Add dropdown menu and icon for system notifications
* Finish system notification dropdown menu and add tests
 2019-02-19 11:08:59 +01:00
mlorb
8bad68c854
Merge pull request #1457 from mlorb/ml-sci-2933 
Change experiment cards look and feel [SCI-2933]
 2019-02-12 11:49:24 +01:00
Urban Rotnik
16e9a56874 Add recaptcha to invitation modal 
SCI-2935
 2019-01-25 11:27:01 +01:00
mlorb
a297ef2094
Merge pull request #1443 from mlorb/ml-sci-2914 
Allow org. administrators to invite them onto all projects [SCI-2914]
 2019-01-24 16:24:57 +01:00
mlorb
7fdef4d3ec Change experiment cards look and feel 2019-01-18 15:57:44 +01:00
Oleksii Kriuchykhin
ec28db6f4f Fix image URLs in export all document [SCI-2931] 2019-01-10 14:19:40 +01:00
mlorb
06b1e5cf20 Allow org. administrators to invite them onto all projects 2019-01-08 16:30:52 +01:00
mlorb
4040b31143 Fix behavior when user has no teams 2018-12-10 15:42:05 +01:00
Luka Murn
8b1449b5a2 Add bottom margin to OAuth authorize page, for better mobile xp 2018-11-28 21:46:33 +01:00
Alex Kriuchykhin
95e19e1229
Merge pull request #1381 from okriuchykhin/ok_SCI_2859 
Refactor & restyle the API authorization screen [SCI-2859]
 2018-11-22 13:06:13 +01:00
Oleksii Kriuchykhin
59fb971394 Change text color on project cards tabs [SCI-2872] 2018-11-20 17:31:27 +01:00
Oleksii Kriuchykhin
d98f11abdc Refactor & restyle the API authorization screen [SCI-2859] 2018-11-20 17:02:45 +01:00
Luka Murn
84df2c81f9 Merge branch 'features/export-all' 
Conflicts:
	app/controllers/experiments_controller.rb
	app/controllers/my_modules_controller.rb
	db/schema.rb
 2018-11-13 09:14:02 +01:00
Luka Murn
42793d25b7 Add bottom padding to sign in/up/forgot password pages 
Closes SCI-2764.
 2018-10-24 13:57:58 +02:00
Oleksii Kriuchykhin
53874c4680 Fix Hound config and CSS code styling [SCI-2730] 2018-10-03 10:39:22 +02:00
Oleksii Kriuchykhin
7d995189bd Fixies after code review [SCI-2730] 2018-10-02 14:24:44 +02:00
Oleksii Kriuchykhin
2508394924 Refactor Projects view - cards view [SCI-2730] 2018-09-27 10:43:44 +02:00
Luka Murn
63b4f7d909
Merge pull request #1274 from Zanz2/zz_in_app_tooltips_help_sci2662 
Added Tooltips (bootstrap popovers) for various elements in scinote [SCI-2662]
 2018-09-24 16:23:53 +02:00
Zanz2
87d2b0db14 fixed accordign to pr review 2018-09-24 15:57:31 +02:00
Zanz2
07757e382a fixed hound 2018-09-14 13:43:31 +02:00
Zanz2
22a565a684 Made fixes according to review 2018-09-14 13:07:09 +02:00
Zanz2
db610f146f fixed hound 2018-08-29 11:41:07 +02:00
Zanz2
c84ff3d9fe Small oversight fix 2018-08-29 11:37:07 +02:00
Zanz2
ed5a5e7390 Fixed blue block in dropdown, now its a full line 2018-08-29 11:33:20 +02:00
Oleksii Kriuchykhin
6669beaf0e Change icons throughout the rest of application [SCI-2445] 2018-07-27 15:27:08 +02:00
zmagod
4b81c2c4db fixes tagsinput text-area on long input [fixes SCI-2566] 2018-06-26 09:52:07 +02:00
Luka Murn
dbceac7aa4 Style inventories secondary navigation section 2018-06-08 08:31:22 +02:00
Luka Murn
4cdfe67115 Fix protocol management filter display (css) 2018-06-07 15:57:59 +02:00
Luka Murn
b324a2dab3 Restyle activities page 2018-06-07 09:29:47 +02:00
Luka Murn
20ffa57583 Move sign-in flow layout to core 
Closes SCI-2477.
 2018-06-01 09:11:48 +02:00
mlorb
79f1a1c0ad fix padding and change label colors 2018-05-23 11:13:28 +02:00
mlorb
81392362ac Final button colour changes 2018-05-18 16:24:24 +02:00
mlorb
933a98c1f6 fix smart anotation color 2018-05-17 11:01:15 +02:00
Zmago Devetak
9d2303c777
Merge pull request #1115 from ZmagoD/zd_SCI_2321 
fixes images preview in repository/library [fixes SCI-2321]
 2018-05-16 12:05:33 +02:00
zmagod
98baa77846 fixes cursor icon 2018-05-16 12:02:46 +02:00
zmagod
7e3dbcd92f hound 2018-05-16 10:43:25 +02:00
zmagod
712a3c7ff6 fixes css, changes spinner in preview modal 2018-05-16 10:40:49 +02:00
mlorb
dfe65ccaed UI/UX restyle - fixes throughout application - part 2 2018-05-14 18:33:57 +02:00
mlorb
f01cfc2968 fix hound 2018-05-14 12:08:45 +02:00
mlorb
ed27a7a62a some extra restyling/unifying off app 2018-05-11 18:02:17 +02:00
zmagod
e5c3fb6af2 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2321 2018-05-10 10:38:56 +02:00
zmagod
38869ec037 adds title on disabled download file link 2018-05-10 09:47:10 +02:00
mlorb
7df40e56c7 UI/UX restyle - fixes throughout application part one 2018-05-08 16:33:42 +02:00
Zmago Devetak
ee307886df
Merge pull request #1124 from ZmagoD/zd_SCI_2347 
fix the missing icons on task card [fixes SCI-2347]
 2018-05-04 09:34:49 +02:00
zmagod
0177dc811b fixes per @mojca 's request 2018-05-03 16:21:29 +02:00
zmagod
abbc0995f2 fix css 2018-05-03 14:51:49 +02:00
zmagod
60e5aa8716 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2142_v2 2018-05-03 14:49:06 +02:00
zmagod
f04677600b fix the missing icons on task card [fixes SCI-2347] 2018-05-03 10:05:40 +02:00
zmagod
66b676b5ce Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2321 2018-04-26 17:04:36 +02:00
mlorb
88d5ba369d
Merge branch 'ux-release-1' into ml-sci-2244 2018-04-26 14:07:03 +02:00
Luka Murn
cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
mlorb
9e11f3b220 update buttons positions and wording throughout app 2018-04-25 13:57:12 +02:00
zmagod
4d6e995481 add dismiss buttons back 2018-04-25 10:43:16 +02:00
zmagod
c2d19fee52 fixes images preview in repository/library [fixes SCI-2321] 2018-04-24 13:11:55 +02:00
mlorb
72c79013de fix file preview background 2018-04-19 17:40:24 +02:00
mlorb
c08d72be36 remove breadcrumbs throughout application 2018-04-17 17:00:04 +02:00
zmagod
a2d8285f35 fixes archive button but [fixes SCI-2300] 2018-04-16 09:22:10 +02:00
Luka Murn
9bf8b5d864 Merge branch 'ok_SCI_1860' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_1860 
Conflicts:
	Makefile
	app/assets/javascripts/projects/index.js.erb
	app/assets/stylesheets/themes/scinote.scss
	config/locales/en.yml
 2018-04-12 13:16:46 +02:00
Zmago Devetak
bdb6554870
Merge pull request #1049 from ZmagoD/zd_SCI_2218_2219 
adds manage columns page
 2018-04-06 17:06:28 +02:00
zmagod
cf7761daaa Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into ok_SCI_2223 2018-04-06 12:56:39 +02:00
zmagod
c0cc6c293a fixes tiny_mce pdf report in filesystem storage mode [fixes SCI-2279] 2018-04-05 13:15:32 +02:00
zmagod
a8a19df06d Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-05 08:51:58 +02:00
Oleksii Kriuchykhin
9720063fb3 Fix tests [SCI-2217] 2018-04-05 00:06:11 +02:00
zmagod
0c05c60ebf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-04 16:06:38 +02:00
Oleksii Kriuchykhin
3b7977ee3b Merge latest changes from ux-release-1 [SCI-2217] 2018-04-04 14:20:34 +02:00
zmagod
5eb007f4d2 fixes per @mlorb 's request 2018-04-04 13:22:14 +02:00
zmagod
38b84edfb0 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-04-04 12:59:41 +02:00
Oleksii Kriuchykhin
51860652c1 Refactor smart annotations modal [SCI-2223] 2018-04-02 20:38:56 +02:00
Oleksii Kriuchykhin
cc5d8550b1 Refactor file preview modal [SCI-2217] 2018-03-30 11:50:28 +02:00
mlorb
10b5e1de84 refactor typography 2018-03-30 09:54:57 +02:00
mlorb
4bf9369bc5 refactor buttons 2018-03-29 13:58:14 +02:00
mlorb
22afa61b11 refactor colors 2018-03-28 13:54:01 +02:00
zmagod
3be3c00574 adds manage columns page [fixes SCI-2218] 2018-03-22 09:35:36 +01:00
zmagod
81df97f008 add library sidebar and create new library button [fixes SCI-2121] 2018-03-21 09:22:55 +01:00
Oleksii Kriuchykhin
a105e61d48 Remove tutorial [SCI-1860] 2018-03-18 13:18:05 +01:00
Oleksii Kriuchykhin
37f675b32a Use larger LinkedIn sign-in button [SCI-2201] 2018-03-18 12:18:33 +01:00
zmagod
a9dfcd9681 refactor 2018-03-16 16:38:59 +01:00
zmagod
311b2dac5a Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2142 2018-03-16 16:21:47 +01:00
zmagod
ee03115361 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2095 2018-03-16 15:32:40 +01:00
zmagod
a6a25bbe08 add floating alert message 2018-03-13 16:33:48 +01:00
zmagod
51af74071c remove comments and activity modal 2018-03-13 10:52:53 +01:00
zmagod
8fe173e831 re-structure top navigation bar 2018-03-12 16:27:35 +01:00
zmagod
e218cae453 refactor global activities in separate page [fixes SCI-2141] 2018-03-12 11:01:23 +01:00
Zanz2
1fc8b2a2b2 quick fix un-needed styling 2017-12-10 01:45:47 +01:00
Zanz2
d0a9198408 Fixed the styling 2017-12-10 01:20:08 +01:00
mlorb
cd6799d571
Merge pull request #866 from biosistemika/protocols-io-import 
Protocols io import
 2017-11-13 11:53:28 +01:00
Zanz2
4354363215 rubocop refactor css 2017-11-03 16:46:03 +01:00
Zanz2
ac26b17ddf Rubocop refactor 2017-11-03 16:45:15 +01:00
Oleksii Kriuchykhin
631b41cdaa Improve error handling in file uploads [SCI-1609][SCI-1612][SCI-1551] 2017-10-19 11:38:23 +02:00
Zanz2
d85e02730d Addes steps, basic functionality is working, still need to style and fix bugs and upload to database etc 2017-09-15 12:19:58 +02:00
Zanz2
b7432b336a added file upload popup modal, rails routes and controller functions, deleted old standalone model and controller 2017-09-13 15:15:08 +02:00
Žan Žagar
62350d0d42 Changed the styling so first option isnt outlined like button, but now mouse cursor wont change to hand when hovering over; will leave this small bug for fixing later 2017-09-11 16:03:33 +02:00
Žan Žagar
f668f60237 dodav moj stil gumba, ki ga opredeli kot link (padding 0, border 0), za dropdown meni 2017-09-11 15:22:22 +02:00
Oleksii Kriuchykhin
fc72453a5b Fix hound warning [SCI-1356] 2017-06-23 16:19:59 +02:00
Oleksii Kriuchykhin
e038bc58fa Add global search in custom repositories [SCI-1356] 2017-06-23 16:12:56 +02:00
zmagod
a2e1aa5b36 fixes bug with long text in parse records modal [fixes SCI-1392] 2017-06-22 14:43:01 +02:00
Mojca Lorber
a195c9a5af truncate and display text in tooltip in custom repository fields 2017-06-15 15:08:33 +02:00
zmagod
33b996ffee refactor 2017-06-09 09:49:57 +02:00
zmagod
1c021b11db adds drag and drop files upload to steps [fixes SCI-1310] 2017-06-02 16:34:09 +02:00
Matej Zrimšek
b97cb91840 Refactoring of modal for adding content to report. [fixes SCI-487] 2017-05-15 17:43:12 +02:00
Oleksii Kriuchykhin
620a989a2f Improve view of badges on experiment canvas [SCI-152] 2017-05-09 14:07:23 +02:00
Oleksii Kriuchykhin
3f60439948 Change color of loading animation in reports [SCI-1029] 2017-05-08 11:02:51 +02:00
Oleksii Kriuchykhin
d3fb688fce Change color of turbolinks progress bar [SCI-1029] 2017-04-26 15:04:29 +02:00
okriuchykhin
3d805d529d Merge pull request #554 from okriuchykhin/ok_SCI_877 
Add image preview to protocol repository [SCI-877]
 2017-04-18 08:58:39 +02:00
Zmago Devetak
cb1ad9e0be Merge pull request #555 from ZmagoD/zd_SCI_1103 
adds additional explanations [fixes SCI-1103]
 2017-04-13 15:15:08 +02:00
zmagod
0987cf8abc fixes hound alerts 2017-04-13 14:55:18 +02:00
zmagod
f104444a0c adds additional explanations [fixes SCI-1103] 2017-04-12 16:56:47 +02:00
Oleksii Kriuchykhin
181d981a51 Add image preview to protocol repository [SCI-877] 2017-04-12 16:05:38 +02:00
Mojca Lorber
b09c18a9bc fix overlaping text in audit trail table 2017-04-11 14:29:31 +02:00
zmagod
023b3213e8 fixes email link [fixes SCI-765] 2017-03-24 12:10:07 +01:00
Luka Murn
4ddb139911 Fix padding of state buttons 
Closes SCI-1073.
 2017-03-03 16:36:52 +01:00
Oleksii Kriuchykhin
a326fa374f Lower z-index value for notification count icon [SCI-739] 2017-02-22 14:35:07 +01:00
Mojca Lorber
6b30f097f0 fix visual bug in edit avatar mode 2017-02-21 14:02:42 +01:00
Oleksii Kriuchykhin
db90c5d63b Add datatable to all teams page [SCI-936] 2017-02-02 09:53:59 +01:00
zmagod
8c035a1981 renames organization in assets 2017-01-25 12:12:27 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
zmagod
6e7fa21dd3 adds smart annotation in task comments, refactor smart_annotation_parser method, fix the user popover description [fixes SCI-924] 2017-01-24 10:51:12 +01:00
zmagod
9c3bc8dac7 fixes checklist item user popover bug [fixes SCI-907] 2017-01-23 09:47:04 +01:00
Mojca Lorber
6de83ff53b fix hound 2017-01-19 15:58:40 +01:00
Mojca Lorber
44de927cf4 display smart annotations in reports - without rich text fields 2017-01-19 14:22:54 +01:00
Oleksii Kriuchykhin
890c5e3c3d Add “no results found” message in smart annotation [SCI-886] 2017-01-19 13:42:58 +01:00
Luka Murn
cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
zmagod
cb0483a6e6 refactor 2017-01-18 08:34:29 +01:00
zmagod
1b2fa78e42 adds user preview to user smart annotation [fixes SCI-832] 2017-01-13 11:34:10 +01:00
zmagod
a4aa933151 refactor smart annotation parser helper 2017-01-11 10:34:14 +01:00
zmagod
a903772de8 style dropdown 2017-01-10 17:05:32 +01:00
Mojca Lorber
510731bd4e change color of clickable nameswhen row is selected in datatables 2017-01-09 15:51:21 +01:00
Luka Murn
0ee5b98977 Refactor code a bit, add dismiss button to header 2017-01-07 09:59:52 +01:00
Luka Murn
b614ce714b Restyle atwho dropdown 2017-01-05 14:06:48 +01:00
Luka Murn
e12907c9b9 Remove original atwho css, apply our own 2017-01-05 10:52:28 +01:00
mlorb
59751ec41e Merge pull request #373 from mlorb/ml_sci_709 
Add Protocol Preview to Protocol repository [SCI-709]
 2017-01-04 11:28:55 +01:00
Luka Murn
3bee9d2e12 Save an (yet unworking) version of user smart annotations 
Used so other devs can start working on smart annotations.
 2017-01-04 10:54:02 +01:00
Mojca Lorber
fe37ac3b6d fix hound 2 2017-01-03 17:46:30 +01:00