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223 commits

Author SHA1 Message Date
Jure Grabnar 06b8d1fda7 Update ApiClient tests 
Closes SCI-3434
 2019-06-27 14:54:19 +02:00
Jure Grabnar 8a7a2eb097 Add StandardError checking for ProtocolNormalizer 2019-06-27 10:12:00 +02:00
Jure Grabnar 86bc69e510 Simplify V3 errors structure 2019-06-27 09:42:21 +02:00
Mojca Lorber 9fd83d54a0 Put network error handeling into api and refactor errors 2019-06-26 14:04:03 +02:00
Urban Rotnik bf6041e13d Update sanitization of html descriptions 2019-06-19 11:05:22 +02:00
Urban Rotnik 7e69375016 Drop header column and row when extract tables 2019-06-19 10:47:38 +02:00
Urban Rotnik 2a579f2240 Add Warnings, Before start and Guidelinese to protocol description 2019-06-19 09:02:42 +02:00
Mojca Lorber ebcaa4b014 Implement protocols.io error handling for api client and normalizer 2019-06-18 14:01:57 +02:00
Urban Rotnik 7fad5fc594 Add search service and normalizer for list 2019-06-17 12:24:15 +02:00
Jure Grabnar 362b0cd45d Hound fixes 2019-06-17 12:24:11 +02:00
Jure Grabnar 640f6c1211 Fix tests after BuildProtocolFromClientService refactor 
Closes SCI-3544
 2019-06-17 12:24:11 +02:00
Jure Grabnar 1e8627c450 Refactor ImportProtocol service to BuildProtocolService 
Closes SCI-3544
 2019-06-17 12:24:10 +02:00
Urban Rotnik 2bb4f558b7 View rendering simplified, small improvements 2019-06-17 12:24:09 +02:00
Urban Rotnik 807104035c Add StepBuilder, TableBuilder, AssetBuilder for PIO, normalized updated 2019-06-17 12:24:09 +02:00
Urban Rotnik 6a4deb0201 Add ProtocolIntermediateObject 2019-06-17 12:24:09 +02:00
Urban Rotnik aadf2eecb4 Basic data normalizer for ProtocolIO 2019-06-17 12:24:08 +02:00
Urban Rotnik ec49388283 Add protocol base normalizer class 2019-06-17 12:24:08 +02:00
Jure Grabnar c1cee07a63 Extract API client constants to constants.rb 2019-06-17 12:24:08 +02:00
Jure Grabnar a15b1f6dfa Add logging for ApiClient and fix hound formatting 2019-06-17 12:24:08 +02:00
Jure Grabnar 5685709f48 Implement API client for protocols.io 
Closes SCI-3357
 2019-06-17 12:24:07 +02:00
aignatov-bio 68937dd192
Fix RTE import for protocol repository (#1833) 2019-06-14 16:20:27 +02:00
Oleksii Kriuchykhin 8920d38a02 Make repositories more extendable [SCI-3528] 2019-06-06 17:28:59 +02:00
Oleksii Kriuchykhin 6917ea56e8 Fix import of ELN protocols [SCI-3506] 2019-05-29 15:41:54 +02:00
aignatov-bio 3633274c8f
Fix import for eln (#1741) 2019-05-13 10:22:30 +02:00
Anton Ignatov 7c55fcf0cf Merge branch 'master' into master-with-note-section 2019-04-30 12:07:59 +02:00
Jure Grabnar b37349624a
Merge pull request #1714 from biosistemika/jg_sci_3380 
Add editnew action for editing new office files [SCI-3380]
 2019-04-30 09:57:07 +02:00
Jure Grabnar ed003aca13 Add editnew action for editing new office files 
Closes SCI-3380
 2019-04-30 08:19:52 +02:00
Anton Ignatov 7d60eb5572 Fix migration issues 2019-04-23 11:11:22 +02:00
Anton Ignatov aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
aignatov-bio 6b45dcd475
Update eln export for new tinyMCE image format (#1680) 2019-04-19 14:44:40 +02:00
Mojca Lorber b00cf07684 Add activity for importing inventory items 2019-04-18 15:18:10 +02:00
Oleksii Kriuchykhin f9832013b0 Improve experiment preview image generation [SCI-3177] 2019-04-17 12:06:46 +02:00
Oleksii Kriuchykhin e7151e6e6b Disable inventory import activity logging [SCI-3290] 2019-04-03 22:42:33 +02:00
Alex Kriuchykhin d8ce4d4a91
Merge pull request #1640 from okriuchykhin/ok_SCI_3281_v2 
Fix activity creation for editing wopi file in protocol repository [SCI-3281]
 2019-04-03 21:14:36 +02:00
Oleksii Kriuchykhin 14978f7c1f Fix activity creation for editing wopi file in protocol repository [SCI-3281] 2019-04-03 19:51:54 +02:00
Jure Grabnar f00f4d39af Refactor step activities using position_plus_one 
Closes SCI-3273
 2019-04-03 13:10:45 +02:00
Jure Grabnar a2623b5124 Fix non-existant current_team in WOPI create_activity 
Closes SCI-3279
 2019-04-02 14:20:01 +02:00
mlorb b24a07f1c8
Merge pull request #1616 from mlorb/ml-sci-3237 
Change activities for task protocols [SCI-3237]
 2019-04-01 14:32:16 +02:00
Jure Grabnar 6533368763 Add activity for importing inv items 2019-03-29 15:41:34 +01:00
Mojca Lorber 3c69225d6b Change activities for task protocols 2019-03-29 15:09:20 +01:00
Miha Mencin 4c3c0ef908 removing activity creation from demo project 2019-03-25 15:45:10 +01:00
Miha Mencin 4a87216a3d
Merge branch 'master' into features/global-activities 2019-03-25 14:35:24 +01:00
Mojca Lorber e34ddeaefd Remove activities from demo project 2019-03-20 13:25:59 +01:00
Mojca Lorber cd7a87348f Protocol activities refactoring, without tests 2019-03-19 16:12:07 +01:00
Miha Mencin 6deaff6382 fixing hound errors 2019-03-04 18:36:32 +01:00
Miha Mencin fa7bba9de7 scheduling creation of demo project at the sign in time 
remove wrong schema, fix comment, add migration
 2019-03-04 18:26:15 +01:00
Miha Mencin 4f9daa9590 SCI-3112 Change the the comments in demo project generator 2019-02-28 11:39:44 +01:00
Miha Mencin 088a860683
Merge pull request #1539 from biosistemika/features/templates 
Features/templates
 2019-02-28 10:23:13 +01:00
Miha Mencin d03ef2cd2a
Merge branch 'master' into features/templates 2019-02-28 09:41:20 +01:00
Jure Grabnar 93490a1f47 Add missing created_at and fix typo 
Closes SCI-3100, SCI-3098
 2019-02-28 07:29:25 +01:00
Jure Grabnar 0fbbe8b5de Add result comments to demo project 
Closes [SCI-3100].
 2019-02-27 20:32:28 +01:00
Jure Grabnar 0699204d3b Add changes for parallel exec discussed with Miha 2019-02-27 15:22:19 +01:00
Jure Grabnar 30bc536d07 Fix smart annotations in demo project 
Closes SCI-3097, SCI-3102.
 2019-02-26 14:36:48 +01:00
Jure Grabnar 2464a45f83 Fix ordering for another step in demo project 
Closes SCI-3098.
 2019-02-26 08:34:50 +01:00
Jure Grabnar c409c39e60 Fix demo project's checklist item ordering 
Closes SCI-3099.
 2019-02-26 08:26:02 +01:00
Jure Grabnar b6dd783114 Improve generation of a demo project 
Closes SCI-3096
 2019-02-26 08:06:07 +01:00
Urban Rotnik c8ab9f8ff8 Fix tests 2019-02-26 08:04:05 +01:00
Jure Grabnar d7e91676c3 Rename initial experiment back to the old one 2019-02-24 08:13:57 +01:00
Jure Grabnar f98d6fbd4d Remove archived task in Demo project 
Closes SCI-3082.
 2019-02-22 11:58:32 +01:00
Jure Grabnar ffe0493013 Rename Demo project and create rake task to create it on existing users 
Closes SCI-3080.
 2019-02-21 23:31:55 +01:00
Mojca Lorber 16f99afbc0 Minor fixes 2019-02-13 12:20:14 +01:00
Mojca Lorber 227aeb284c change mydemo projects data 2019-02-05 11:15:16 +01:00
Mojca Lorber fa1dff6352 refactor Demo project generation 2019-01-24 13:40:53 +01:00
Oleksii Kriuchykhin c86063f79e Fix failing tests [SCI-2688] 2018-08-24 15:48:49 +02:00
zmagod e654725d9e fixes smart annotation serch queries/dropdown item picker [fixes SCI-2511] 2018-07-06 14:26:20 +02:00
mlorb f972676f8d
Merge pull request #1158 from Ducz0r/lm-sci-2416-fix 
Update software with new logo & new brand [SCI-2416]
 2018-05-23 15:47:17 +02:00
Oleksii Kriuchykhin 5c41527b92 Enable editing office online files in inventories [SCI-2342] 2018-05-21 15:48:48 +02:00
Luka Murn 69d1f0511f Rename sciNote -> SciNote (app/ folder) 2018-05-21 15:19:11 +02:00
Oleksii Kriuchykhin 39d594b0da Disable some validations in repository import to improve speed [SCI-2404] 2018-05-15 11:14:43 +02:00
Luka Murn 5e2622ecfc Change default repository state to Ruby representation 
Also remove some dead code from repositories datatables
 2018-04-20 12:31:22 +02:00
Zmago Devetak 93fc1af12d
Merge pull request #1083 from ZmagoD/zd_SCI_2259 
set limit on maximum number of dropdown list items [fixes SCI-2259]
 2018-04-19 17:17:54 +02:00
Luka Murn 09c60d2468 Fixes per @Ducz0r's request 2018-04-12 14:38:22 +02:00
Luka Murn 9bf8b5d864 Merge branch 'ok_SCI_1860' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_1860 
Conflicts:
	Makefile
	app/assets/javascripts/projects/index.js.erb
	app/assets/stylesheets/themes/scinote.scss
	config/locales/en.yml
 2018-04-12 13:16:46 +02:00
zmagod 23653d1d95 refactor 2018-04-11 09:29:08 +02:00
zmagod e4b49e62a3 fixes import limit 2018-04-10 15:45:51 +02:00
Oleksii Kriuchykhin 51860652c1 Refactor smart annotations modal [SCI-2223] 2018-04-02 20:38:56 +02:00
Oleksii Kriuchykhin a105e61d48 Remove tutorial [SCI-1860] 2018-03-18 13:18:05 +01:00
zmagod b67a54e2d1 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2024_fix_custom_repositores_import 2018-03-13 15:25:57 +01:00
zmagod 5b56f3dbd6 fix hound 2018-03-13 14:47:35 +01:00
zmagod dd2f7dd417 Merge branch 'master' of https://github.com/biosistemika/scinote-web into samples_to_repositories_table_migration 2018-03-13 13:24:36 +01:00
zmagod 0996745781 refactor repository import, adds RepositoryListType as an option and makes the import class more extensible [fixes SCI-2024] 2018-03-02 13:39:22 +01:00
zmagod 83ba412c48 remove unneeded comment 2018-03-01 11:51:39 +01:00
zmagod 6908368506 refactor 2018-02-27 10:43:57 +01:00
zmagod 3aa28f6d11 assign repository row to task 2018-02-27 10:40:52 +01:00
Matej Zrimšek 1904099954 Put permissions helper methods inside utility module. 2018-02-21 20:22:13 +01:00
zmagod 18eab358c7 generate custom repository when user is created [fixes SCI-2020] 2018-02-13 10:44:50 +01:00
okriuchykhin a2896031ab
Merge pull request #951 from okriuchykhin/ok_SCI_1949 
Allow first user seeding from env variables [SCI-1949]
 2018-01-23 14:02:54 +01:00
Oleksii Kriuchykhin df28503ec1 Fix fetching protocol name in protocol import [SCI-1951] 2018-01-18 17:25:20 +01:00
Oleksii Kriuchykhin d1a515da90 Allow first user seeding from env variables [SCI-1949] 2018-01-18 16:23:33 +01:00
zmagod 3fae267547 fix import protocol preview [fixes SCI-1867] 2018-01-05 15:30:11 +01:00
zmagod e69e9f6794 remove unneeded comment and add tiny_mce_asset regex in a constant 2017-11-24 17:04:01 +01:00
Zmago Devetak 728f656472
update protocols_exporter.rb 2017-11-24 15:23:19 +01:00
zmagod d200e355ed follow @Ducz0r 's suggestions 2017-11-24 11:45:07 +01:00
zmagod afbeafb137 adds RTE images import, disables turbolinks on edit step actions 2017-11-22 16:28:14 +01:00
zmagod 91fec89cab adds tiny_mce_assets to protocol export 2017-11-21 16:30:48 +01:00
mlorb 126f278308
Merge pull request #853 from Zanz2/ZZ_import_protocolsio_json 
Scinote protocols IO base branch
 2017-11-06 14:53:01 +01:00
okriuchykhin db9a031581 Merge pull request #813 from okriuchykhin/ok_SCI_1642 
Refactor canvas [SCI-1642]
 2017-10-12 17:45:34 +02:00
Zanz2 f5b2ad0d34 Refactor github code review 2017-10-07 16:07:04 +02:00
Zanz2 48f03d6dfb hound blank line fix 2017-10-05 18:41:58 +02:00
Zanz2 fc1cd73e1d fixed hound blank line 2017-10-05 18:38:44 +02:00