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10800 commits 69 branches 179 tags 165 MiB
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1712 commits

Author SHA1 Message Date
Alex Kriuchykhin cc063a46b7
Fix time zone issues in advanced repository filters [SCI-6467] (#3819) 2022-02-04 10:30:11 +01:00
Alex Kriuchykhin 4627d15fc3
Implement import for repository stock values [SCI-6461] (#3818) 2022-02-04 10:29:48 +01:00
artoscinote cdbf1f5fa0
Implement stock management activities [SCI-6452] (#3810) 
* Implement stock management activities [SCI-6452]

* PR code fixes [SCI-6452]
 2022-02-02 10:33:02 +01:00
Alex Kriuchykhin c1972e4fb2
Fix advanced filtering with multiple filters [SCI-6471] (#3807) 2022-01-31 11:10:39 +01:00
Alex Kriuchykhin fbcb94193a
Fix repository advanced filtering on time column [SCI-6467] (#3805) 2022-01-31 09:41:20 +01:00
aignatov-bio c8784d1f66
Add advanced filters for date/datetime/time range [SCI-6462] (#3806) 
Co-authored-by: Anton <anton@scinote.net>
 2022-01-31 09:21:08 +01:00
Oleksii Kriuchykhin dd5f8c2793 Add stock management columns to snapshots [SCI-6448] 2022-01-28 13:19:37 +01:00
aignatov-bio 2c88843924
Task stock consumption modal[SCI-6444][SCI-6445] (#3798) 
Add main logic for consumption on task [SCI-6444]

Co-authored-by: Anton <anton@scinote.net>
 2022-01-28 11:10:56 +01:00
Oleksii Kriuchykhin 6d877e6bf7 Fix repository users list and filtering by row name [SCI-6457] 2022-01-27 22:50:04 +01:00
aignatov-bio 60859fec4e
Fix filtering for checklists, dropdown and status [SCI-6465] (#3802) 
Co-authored-by: Anton <anton@scinote.net>
 2022-01-27 14:01:09 +01:00
Oleksii Kriuchykhin 9f3b77ed15 Finalyze repository filter elements management backend [SCI-6396] 2022-01-26 10:12:46 +01:00
Alex Kriuchykhin d2b5db13e9
Add stock and consumption to assigned items section [SCI-6434] (#3793) 2022-01-25 12:12:55 +01:00
Martin Artnik 711005425f Merge branch 'features/bmt-search' of github.com:biosistemika/scinote-web into features/repository-filters 2022-01-20 13:30:33 +01:00
Martin Artnik abac837cd4 Merge branch 'develop' of github.com:biosistemika/scinote-web into features/repository-filters 2022-01-20 13:26:08 +01:00
artoscinote 95a36b6870
Implemented stock management modal [SCI-6417] (#3788) 
* Implement inventory stock management modal [SCI-6417]

* Add generalized validation mechanic, some bugfixes [SCI-6417]

* Fix permission check and method name in RepositoryStockValue [SCI-6417]
 2022-01-20 12:44:57 +01:00
aignatov-bio 05547da457
Add stock table renders [SCI-6412] (#3787) 
Co-authored-by: Anton <anton@scinote.net>
 2022-01-19 13:19:56 +01:00
aignatov-bio 01f1b5bd10
Add stock column type (#3786) 
* Add stock column type

* Create new stock column [SCI-6410]

* Small fixed for stock column [SCI-6410]

* Add stock column validations [SCI-6410]

Co-authored-by: Anton <anton@scinote.net>
 2022-01-18 13:17:05 +01:00
Oleksii Kriuchykhin a4d84e1a3b Add initial implementation of inventory stock management [SCI-6402] 2022-01-12 17:13:50 +01:00
aignatov-bio 5512db18f0
Fix state for bmt repository [SCI-6089] (#3758) 
Co-authored-by: Anton <anton@scinote.net>
 2022-01-03 12:34:06 +01:00
Martin Artnik 023b68bfac Fixed datatable columns for BMT repo [SCI-6385] 2021-12-21 15:15:34 +01:00
Oleksii Kriuchykhin 738da6094f Add advanced filters to repository datatable service [SCI-6210] 2021-12-21 12:38:52 +01:00
Martin Artnik f3cc31052b Amend BMT repository default columns [SCI-6385] 2021-12-21 12:19:19 +01:00
Martin Artnik 9026029a26 Fix BMT repository default state [SCI-6386] 2021-12-20 16:19:17 +01:00
Martin Artnik c9e4a9bab7 Merge branch 'master' into features/bmt-search 2021-12-20 13:08:20 +01:00
Anton a3971caeb5 Update import row for list and checklist items [SCI-6383] 2021-12-17 12:26:58 +01:00
Oleksii Kriuchykhin cd04b453f1 Use the last status flow as a default one for new tasks [SCI-6098] 2021-12-15 11:53:19 +01:00
Oleksii Kriuchykhin e67b17dd6f Optimize loading of project and experiment cards [SCI-6346] 2021-12-13 16:43:16 +01:00
Oleksii Kriuchykhin 8f1b201061 Improve activities loading speed [SCI-6345] 2021-12-09 19:28:27 +01:00
artoscinote 1c0a83a76e
Fix propagation and display of role on experiment role reset [SCI-6337] (#3725) 2021-12-07 11:42:14 +01:00
Oleksii Kriuchykhin 30031e2f07 Fix user removal from a team [SCI-6323] 2021-12-06 14:24:59 +01:00
Alex Kriuchykhin 245f0aedd7
Fix user removal from a team [SCI-6323] (#3718) 2021-12-03 16:26:19 +01:00
Oleksii Kriuchykhin a8ad7ef826 Add models and controller for repository table filters [SCI-6209] 2021-12-02 14:25:23 +01:00
artoscinote 78ab094bf2
Implement public user grouping, deletion and updates to manually assigned [SCI-6228] (#3701) 
* Implement public user grouping, deletion and updates to manually assigned [SCI-6228]

* PR fixes [SCI-6228]

* Permission check improvement [SCI-6228]
 2021-12-01 16:23:24 +01:00
artoscinote 16b3ee3d94
Add non-cyclical validation to connections [SCI-6287] (#3702) 
* Add non-cyclical validation to connections [SCI-6287]

* Prevent theoretical infinite loop possiblity [SCI-6287]
 2021-12-01 11:14:01 +01:00
Martin Artnik 8a78b8376b Make all except public project assignments manual [SCI-6292] 2021-11-23 10:56:28 +01:00
Oleksii Kriuchykhin a1c4d06e3e Add endpoint for fetching column data including connected items [SCI-6208] 2021-11-22 22:48:36 +01:00
Anton a44dd8c915 Merge branch 'features/bmt-search' into features/repository-filters 2021-11-22 14:24:28 +01:00
aignatov-bio 06577e2f8b
Skip create assignments during team import [SCI-6280] (#3679) 
Co-authored-by: Anton <anton@scinote.net>
 2021-11-22 11:17:39 +01:00
Alex Kriuchykhin ca5a81a85c
Add unique validation for user assignements [SCI-6279] (#3680) 2021-11-22 10:47:20 +01:00
artoscinote a31bcd6eed
Fixed logging of project user role changes [SCI-6283] (#3687) 2021-11-22 09:50:14 +01:00
aignatov-bio 4b79ba209d
Remove visibility condition from projects scope [SCI-6188] (#3667) 
Co-authored-by: Anton <anton@scinote.net>
 2021-11-17 10:16:54 +01:00
Alex Kriuchykhin 8609b84131
Merge pull request #3669 from okriuchykhin/ok_SCI_6270 
Fix seeds to work with new UserRoles, fix Templates creation job [SCI-6270]
 2021-11-17 09:59:30 +01:00
artoscinote 0749fbdf7b
Regenerate user assignments when moving task workflow [SCI-6262] (#3668) 2021-11-16 11:10:15 +01:00
Oleksii Kriuchykhin 2e92500a73 Fix seeds to work with new UserRoles, fix Templates creation job [SCI-6270] 2021-11-15 21:36:06 +01:00
aignatov-bio 8f9ab4f6c3
Refactor permissions breadcrumbs for users [SCI-6260] (#3665) 
* Refactor permissions breadcrumbs for users [SCI-6260]

* Change creator assignments to automatically [SCI-6260]

Co-authored-by: Anton <anton@scinote.net>
 2021-11-15 15:02:22 +01:00
artoscinote 4ce0c53d36
Implemented reset role functionality [SCI-6261] (#3662) 
* Implemented reset role functionality [SCI-6261]

* Linter fixes [SCI-6261]
 2021-11-15 11:12:31 +01:00
artoscinote a6c61c2b4e
Fixed permission issues when moving experiment [SCI-6257] (#3655) 
* Fixed permission issues when moving experiment [SCI-6257]

* Copy fixes [SCI-6248]

* Use canaid helper instead of permission_granted [SCI-6257]

* Fixes [SCI-6257]
 2021-11-12 12:59:49 +01:00
Oleksii Kriuchykhin f73f9dd2c1 Fix activities for assigning to experiments and tasks [SCI-6254] 2021-11-11 21:30:30 +01:00
artoscinote 0eacb91bed
Renamed 'group_user_role', fixed public project migration [SCI-6234] (#3642) 
* Renamed 'group_user_role', fixed public project migration [SCI-6234]

* Moved public project update inside loop [SCI-6234]
 2021-11-10 09:52:37 +01:00
aignatov-bio 3372b679da
Change role assigning role on object creation [SCI-6247] (#3645) 
Co-authored-by: Anton <anton@scinote.net>
 2021-11-09 16:10:43 +01:00
artoscinote 083efd77fd
Generalize user role propagation job [SCI-6246] (#3649) 2021-11-09 16:09:12 +01:00
Alex Kriuchykhin 9a967cfe40
Fix user removal from the team [SCI-6201] (#3637) 2021-11-09 09:35:36 +01:00
Martin Artnik 81e7b80bae Fixed removal of user from team [SCI-6239] 2021-11-08 16:06:28 +01:00
artoscinote 3e3e2cc24e
Revert "Implement experiment and task access removal" [SCI-6218] (#3635) 
* Revert "Implement experiment and task access removal [SCI-6156] (#3614)"

This reverts commit 2abefd78e6.

* Rename assign to module activity to designate to my module [SCI-6218]
 2021-11-05 15:44:14 +01:00
Oleksii Kriuchykhin a99599efea Merge branch 'features/new_permissions' into develop 2021-10-29 15:16:30 +02:00
artoscinote 2abefd78e6
Implement experiment and task access removal [SCI-6156] (#3614) 2021-10-28 16:32:05 +02:00
Alex Kriuchykhin f8e433a0ca
Merge branch 'features/new_permissions' into ok_SCI_6151 2021-10-28 14:31:47 +02:00
Alex Kriuchykhin 1bde37db78
Merge branch 'develop' into ok_SCI_5579 2021-10-28 13:26:27 +02:00
Oleksii Kriuchykhin b1b7dbb8ef Improve code style [SCI-6151] 2021-10-28 12:58:42 +02:00
aignatov-bio 9e3d64bbb6
Fix projects list in clone experiment dropdowns [SCI-6139] (#3592) 
Co-authored-by: Anton <anton@scinote.net>
 2021-10-27 13:55:49 +02:00
aignatov-bio 22034089a6
Update experiment move service [SCI-6149] (#3599) 
* Update experiment move service [SCI-6149]

* Move permission check to helper [SCI-6149]

Co-authored-by: Anton <anton@scinote.net>
 2021-10-27 13:48:52 +02:00
aignatov-bio 7d6136435d
Change my_module owner after copy [SCI-6176] (#3611) 
Co-authored-by: Anton <anton@scinote.net>
 2021-10-26 12:06:35 +02:00
aignatov-bio 1a05c3a40c
Update canvas task cards [SCI-5021] (#3608) 
Co-authored-by: Anton <anton@scinote.net>
 2021-10-26 12:06:26 +02:00
Alex Kriuchykhin f6a30cac6c
Merge pull request #3593 from okriuchykhin/ok_SCI_6134 
Change Dashboard::RecentWorkService to use new user roles [SCI-6134]
 2021-10-26 11:43:54 +02:00
aignatov-bio edb09dd099
Update copy experiment permission checks [SCI-6147] (#3598) 
Co-authored-by: Anton <anton@scinote.net>
 2021-10-26 11:40:54 +02:00
Oleksii Kriuchykhin 2051ea5360 Update the search to abide the permissions [SCI-6151] 2021-10-22 11:43:20 +02:00
Martin Artnik 6249465b34 Fixed updating user assignment in MyModuleMember [SCI-6169] 2021-10-21 15:51:17 +02:00
artoscinote 3746332c30
Fixed cached user lists when changing assignments [SCI-6137] (#3597) 
Fixed cache invalidation for assignables, current_user missing in cache keys [SCI-6137]
 2021-10-19 16:00:52 +02:00
artoscinote c63090da8c
Fixed scopes and added permission checks to quick create services [SCI-6135] (#3584) 2021-10-14 13:13:29 +02:00
Oleksii Kriuchykhin bc806f0c86 Change Dashboard::RecentWorkService to use new user roles [SCI-6134] 2021-10-13 14:12:24 +02:00
Martin Artnik 6ea34adb22 Fixed designated users relation 2021-10-13 13:39:28 +02:00
artoscinote 5bda5acebc
Fixed the rule for moving experiment [SCI-6128] (#3587) 2021-10-13 13:32:11 +02:00
artoscinote 92fab5dd4f
Update usage of user_my_modules [SCI-6121] (#3585) 2021-10-13 10:10:14 +02:00
artoscinote 462f8ffc47
Fixed unassigned user methods, order by name [SCI-6104] (#3589) 2021-10-13 09:50:06 +02:00
artoscinote 0fe6cd66e5
Fix permission migration, fix assignable scope [SCI-6127] (#3580) 2021-10-05 13:45:52 +02:00
artoscinote 6fbb22922a
Fix project user assignment [SCI_5925] (#3577) 2021-10-05 13:45:34 +02:00
artoscinote a18839f529
Automatically assign team admins as project owners [SCI_6119] (#3575) 2021-10-04 15:47:28 +02:00
aignatov-bio 116c09cd8a
Update users selection for notifications [SCI-6110] (#3573) 2021-10-04 15:43:28 +02:00
aignatov-bio 982aaf887c
Fix duplicate objects on dashboard [SCI-5948] (#3576) 2021-10-04 15:41:35 +02:00
artoscinote 75d6a17cb7
Fix ProjectOverviewService and automatic project assignment [SCI_6117] (#3572) 2021-10-04 11:20:47 +02:00
Martin Artnik 4f4ab05740 Fix project search in quick start controller [SCI-5915] 2021-10-01 12:20:51 +02:00
aignatov-bio dba6ed8515 Use default repository table state [SCI-6089] 2021-09-30 13:30:17 +02:00
artoscinote f68d724202
Rework experiment permissions [SCI-6054] (#3538) 
* Rework experiment permissions [SCI-6054]
 2021-09-30 11:32:11 +02:00
Martin Artnik 49b9ee37cc Merge branch 'develop' into features/bmt-search 2021-09-24 11:01:27 +02:00
Oleksii Kriuchykhin f806a56cac Update existing roles with new permissions/abilities [SCI-6076] 2021-09-24 10:29:24 +02:00
artoscinote 895509a26c
Merge pull request #3543 from artoscinote/ma_SCI_6056 
Reworked MyModule permissions [SCI-6056]
 2021-09-17 15:19:01 +02:00
Martin Artnik 04413c6cc6 Make permission names consistent with spreadsheet [SCI-6056] 2021-09-17 10:41:28 +02:00
Oleksii Kriuchykhin 0762323337 Update/implement permission checks in the project related controllers [SCI-6042] 2021-09-15 14:39:47 +02:00
Martin Artnik e8f57e9e99 Reworked MyModule permissions [SCI-6056] 2021-09-14 11:08:35 +02:00
Alex Kriuchykhin 3ca593d7f9
Merge pull request #3513 from okriuchykhin/ok_SCI_5663 
Allow project management to it's creator if project has no assigned users [SCI-5663]
 2021-09-14 11:08:25 +02:00
Martin Artnik 975a8910a8 Updated project permission helpers [SCI-6041] 2021-09-07 11:27:52 +02:00
Martin Artnik ade1385392 Merge branch 'develop' into features/bmt-search 2021-09-06 10:51:04 +02:00
Martin Artnik 7e6ca3be8a Merge branch 'develop' into features/new_permissions 2021-09-06 10:33:32 +02:00
Alex Kriuchykhin a63f047ae7
Merge pull request #3512 from okriuchykhin/ok_SCI_6031 
Add configuration variable for webhooks, disable by default [SCI-6031]
 2021-08-30 15:35:38 +02:00
Miha Mencin 50d33896e3
Merge pull request #3480 from artoscinote/ma_SCI_5963 
Downcase all user emails, downcase when finding user [SCI-5963]
 2021-08-30 13:00:12 +02:00
Martin Artnik e08b406185 Added additionalDataFilter [SCI-6026] 2021-08-30 10:49:15 +02:00
aignatov-bio b269f3f612 Add saved filters backend [SCI-5977] (#3509) 
* Add saved filters backend [SCI-5977]

* Rework filter saving [SCI-5977]

Co-authored-by: Martin Artnik <martin@scinote.net>
 2021-08-30 10:49:15 +02:00
Oleksii Kriuchykhin d4ef2b1bd4 Add BMT inventory model [SCI-6009] 2021-08-30 10:49:15 +02:00
Oleksii Kriuchykhin 0b74f34de7 Add external IDs to repositories [SCI-5990] 2021-08-30 10:49:14 +02:00
Oleksii Kriuchykhin 4665743d02 Allow project management to it's creator if project has no assigned users [SCI-5663] 2021-08-26 16:56:21 +02:00
Oleksii Kriuchykhin d67f7691a1 Add configuration variable for webhooks, disable by default [SCI-6031] 2021-08-26 14:08:15 +02:00
artoscinote 295d27f0d7
Added option to override default OTP drift time [SCI-6027] (#3507) 2021-08-25 14:02:25 +02:00
Martin Artnik 143e491016 Fixed registering bioeddie molecule on step [SCI-5985] 2021-08-11 14:10:05 +02:00
Martin Artnik 5d5f406e9a Downcase all user emails, downcase when finding user [SCI-5963] 2021-08-11 13:18:58 +02:00
Martin Artnik 57d5e6c2a7 Merge branch 'develop' into features/barcodes 2021-08-03 13:36:36 +02:00
artoscinote f839cb5256
Merge pull request #3464 from biosistemika/features/bioeddie-integration 
Features/bioeddie integration
 2021-08-03 13:32:53 +02:00
artoscinote c41247a5fd
Merge pull request #3439 from artoscinote/ma_SCI_5879 
Implement Save & Register molecule [SCI-5879]
 2021-08-03 12:15:46 +02:00
Martin Artnik 13ddff89a8 Fixed Asset relation handling in activities [ma_SCI_5789] 2021-08-03 09:59:06 +02:00
Martin Artnik a82af505eb Merge branch 'develop' into features/webhooks 2021-08-02 16:22:52 +02:00
Martin Artnik ae174b276a Code review fixes and error handling improvements [SCI-5942] 2021-08-02 15:42:53 +02:00
Martin Artnik 123e415a4f Print status backend + FE integration [SCI-5942] 2021-08-02 15:42:53 +02:00
aignatov-bio a782ce50d1
Add bio eddie files to export all [SCI-5877] (#3426) 2021-08-02 13:27:02 +02:00
Martin Artnik e63a665140 Merge branch 'develop' into features/barcodes 2021-08-02 11:15:48 +02:00
Martin Artnik 0f417f9730 Merge branch 'develop' into features/barcodes 2021-07-29 13:32:17 +02:00
Martin Artnik 5c4f923854 Corrected type for 'assignment' activities [SCI-5662] 2021-07-29 10:13:28 +02:00
Martin Artnik 67f4e81a3a Merge branch 'develop' into features/new_permissions 2021-07-28 15:16:47 +02:00
Martin Artnik b41ee028ca Added overridable send permission method to notifications [SCI-5938] 2021-07-28 13:14:07 +02:00
Martin Artnik b32b207f3d Added FLUICS API client [SCI-5939] 2021-07-23 13:52:28 +02:00
Oleksii Kriuchykhin c26dcf4b23 Replace empty? with blank? [SCI-5579] 2021-07-23 11:56:28 +02:00
Martin Artnik 4bb080c25b Merge migrations, code fixes [SCI-5800] 2021-07-22 10:51:03 +02:00
Alex Kriuchykhin dfa2a7775d
Merge pull request #3422 from okriuchykhin/ok_SCI_5847 
Fix repository cell joining and preloading [SCI-5847]
 2021-07-21 13:18:21 +02:00
aignatov-bio 4de35c983a
Open HELM files in bio eddie [SCI-5890] (#3442) 2021-07-20 13:06:47 +02:00
Martin Artnik c43e1cfbe5 Fixed db error during build 2021-07-20 10:20:47 +02:00
artoscinote 3a281ce9dc
Merge pull request #3433 from artoscinote/ma_SCI_5607 
Also send notification to the user that was unassigned from task [SCI-5607]
 2021-07-20 09:41:46 +02:00
artoscinote 5f9c04844f
Added prefixed IDs to repository rows (items) [SCI-5909] (#3441) 
* Added prefixed IDs to repository rows (items) [SCI-5909]

* Fix prefixed id queries to work with joins, use subquery in repository search [SCI-5909]

* Fixed accessing repository_row parent code [SCI-5909]

* Better handling of repository_row code display [SCI-5909]

* Fix index warning for id prefixed models issue setting up project [SCI-5909]
 2021-07-19 14:23:36 +02:00
Martin Artnik a8f8ab8ba9 Implement label templates with default ZPL template [SCI-5902] 2021-07-19 09:44:14 +02:00
Martin Artnik 96a5b97bdb Implement Save & Register molecule [SCI-5879] 2021-07-15 12:37:04 +02:00
Martin Artnik 1985b7a7e0 Also send task unassign notification to the person that was unassigned [SCI-5607] 2021-07-13 12:11:49 +02:00
zmagoD 277da3abcf fix merge issues 2021-07-10 15:20:55 +02:00
Oleksii Kriuchykhin 549fc8e5a0 Fix repository cell joining and preloading [SCI-5847] 2021-07-07 17:43:51 +02:00
Martin Artnik fdf9c5f6ae Reset file_processing when new file is upladed [SCI-5870] 2021-07-07 14:57:35 +02:00
Oleksii Kriuchykhin d1208bad0b Merge branch 'develop' into features/new_permissions 2021-07-07 13:44:36 +02:00
artoscinote 723b594632
Merge pull request #3398 from artoscinote/ma_SCI_5828 
Expose experiment IDs in interface and reports [SCI-5828]
 2021-06-30 12:58:25 +02:00
Martin Artnik e1b0b65465 Improved code style, fixed bug [SCI-5828] 2021-06-29 15:57:23 +02:00
zmagoD 9c812e84bd setup logic to group assign all team members and handle the unassignments logic 2021-06-27 13:22:19 +02:00
Martin Artnik b2e2186d9f Remove unnecessary tasks hash from full export [SCI-5840] 2021-06-22 14:57:07 +02:00
Martin Artnik c4e6b0bbaf Fixed export all report html generation [SCI-5840] 2021-06-22 14:50:47 +02:00
Martin Artnik eaa713f5b8 Fix indices [SCI-5829] 2021-06-22 12:51:25 +02:00
zmagoD 9b87fce840 add read check to view methods 2021-06-20 11:11:03 +02:00
zmagoD ad10befcc4 add new manage access permission to PET levels 2021-06-19 17:17:57 +02:00
Martin Artnik 29ff910eba Added searching experiments by EX[ID] [SCI-5829] 2021-06-18 14:12:59 +02:00
Martin Artnik 0866a2e251 Added experiment ID to card and table views [SCI-5828] 2021-06-18 14:12:59 +02:00
Oleksii Kriuchykhin bb458abec6 Remove old reports code [SCI-5650] 2021-06-18 10:40:00 +02:00
Martin Artnik 47071e23a1 Added specs for webhooks 2021-06-17 14:54:30 +02:00
Martin Artnik 4ee50f87d5 Implement webhook service and scheduling jobs [SCI-5801, SCI-5802] 2021-06-17 09:19:04 +02:00
Oleksii Kriuchykhin 85a5cca98a Fix repository snapshots for export all [SCI-5776] 2021-06-16 16:17:12 +02:00
zmagoD 25802d7043 adopt move/clone my module logic to work with new user assignments (SCI-5805) 2021-06-12 18:51:55 +02:00
zmagoD 7128987418 fix code style 2021-06-12 10:58:26 +02:00
zmagoD 7e4f47f667 update experiment and my_module search 2021-06-12 10:27:53 +02:00
zmagoD 8997ba10d1 mark user assigmetns when they are created manually or automatically 2021-06-12 09:36:41 +02:00