scinote-eln/scinote-web
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4210 commits 31 branches 181 tags 167 MiB
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416 commits

Author SHA1 Message Date
zmagod
fb66131e29 setup endpoint for repository_rows paging/search 2018-03-06 16:32:39 +01:00
mz3944
bb21f6543c
Merge pull request #1004 from mz3944/mz-SCI-2011 
Wrapping up the permissions [SCI-2011]
 2018-03-06 07:10:40 +01:00
Zanz2
8f5dd3df38
Merge pull request #1003 from Zanz2/table_missing_scrollbar_sci1818 
Table missing scrollbar [SCI-1818]
 2018-03-05 17:13:06 +01:00
Zanz2
1e6f1acef5 fixed according to pr 2018-03-05 17:02:37 +01:00
Zanz2
451d14c2e9 Added 4 to constants too, then fixed line too long error 2018-03-05 16:48:18 +01:00
Zanz2
c5728c4018
Merge branch 'master' into null_step_crash_sci2043 2018-03-05 16:37:24 +01:00
Zanz2
e3e7514049 removed redundant return 2018-03-05 16:15:33 +01:00
Zanz2
554b31e0aa Added constants 2018-03-05 16:09:06 +01:00
Zanz2
ba67446eee quick fix for if previous guid is unknown format 2018-03-03 22:26:00 +01:00
Zanz2
5bcda7f6de fixed pr 2018-03-02 23:02:35 +01:00
Zanz2
350f12bdbc using dig method now 2018-03-02 22:29:51 +01:00
Luka Murn
070450f813 Merge branch 'release-1.12.11' 
Conflicts:
	config/initializers/extends.rb
 2018-03-01 14:04:57 +01:00
Oleksii Kriuchykhin
aa933ad1f4 Add extendable file types mappings for icons [PIP-46] 2018-02-26 14:23:02 +01:00
Zanz2
29aea1ebd2 refactored according to PR 2018-02-21 16:17:53 +01:00
Zanz2
9c2a2956e3 Merge branch 'table_missing_scrollbar_sci1818' of github.com:Zanz2/scinote-web into table_missing_scrollbar_sci1818 
Merging Biosis master with branch that resizes small tables to atleast 5x5
 2018-02-19 17:40:13 +01:00
Matej Zrimšek
b8b9707c06 Fixed protocol and archive permission calls, fixed result permissions; module group managing is now also allowed on newly created groups; other permission call fixes and some refactoring. 2018-02-19 14:51:14 +01:00
Zanz2
673901fb01
Merge pull request #984 from Zanz2/yellow_flashv3_SCI1834 
Fixed tables getting cut when certain attributes are at max length [SCI-1834]
 2018-02-16 12:52:51 +01:00
Matej Zrimšek
5bda53eebf Overall refactoring of all canaid permissions and code related to their calls. 2018-02-16 10:54:06 +01:00
Matej Zrimšek
4fe669ca9a Removed permissions helper and updated the remaining calls to its methods with the new canaid gem permissions. 2018-02-16 10:53:22 +01:00
Zanz2
fab9180b7b fixed small oversight 2018-02-15 23:40:09 +01:00
Zanz2
c963c948a1 Fixed main issue, bad step structure now gets fixed to empty template 2018-02-15 23:28:20 +01:00
Zanz2
95501eb046 saving work for later 2018-02-15 20:01:36 +01:00
Matej Zrimšek
6b1fee4d30 Added/joined repository record assignment to task with sample assignmment to task. 2018-02-14 14:39:10 +01:00
Matej Zrimšek
8ef6c8f91f Refactored remaining experiment level permissions (and everything below it). 2018-02-14 14:39:07 +01:00
Matej Zrimšek
d6e7ef465c Grouped remaining permissions for experiment, protocol, task, and partially step levels. [SCI-1964] 2018-02-14 14:19:22 +01:00
Matej Zrimšek
854333b0e6 Grouped permissions for experiment with canaid gem (WIP). 2018-02-14 14:19:00 +01:00
Matej Zrimšek
d423700e84 Used permissions where they were missing. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
321ddc2916 Grouped existing project permissions and used 'canaid' gem. 2018-02-14 13:09:45 +01:00
Zanz2
a6356d2420 Fixed newline styling, now code is styled in newlines, and since \n doesnt work i change it to <br> with gsub and that allows code to be written into multiple lines 2018-02-07 14:46:25 +01:00
Zanz2
efaf5ad721 Commands now get styled like code 2018-02-07 13:51:22 +01:00
Zanz2
a6e93b8e35 Fixed hound line too long 2018-02-07 13:04:02 +01:00
Zanz2
e56c0bb100 Tables are now always atleast 5x5, like in scinote when creating new table 2018-02-07 10:55:44 +01:00
Zanz2
f7f46a094e Fixed PR and a mistake i made 2018-02-07 09:53:49 +01:00
Zanz2
167cbc98e5
Merge branch 'master' into yellow_flashv3_SCI1834 2018-02-07 09:42:56 +01:00
Zanz2
80735f2412 Fixed the bug with big text difference in preview and imported protocol 2018-02-07 09:26:45 +01:00
Zanz2
a37d4f3cde there are always now atleast 5 rows, like in edit table in repository, so it adds empty rows if there are not atleast 5 originally 2018-02-06 15:46:03 +01:00
Zanz2
a2df9777f6
Merge pull request #983 from Zanz2/gen_rep_empty_sci-2000 
fixed empty table name unable to generate reports bug [SCI-2000]
 2018-02-06 14:34:31 +01:00
Zanz2
83e9550feb
Merge pull request #966 from Zanz2/images_not_imported_SCI1807 
Images not imported [SCI-1807]
 2018-02-06 14:33:35 +01:00
Zanz2
f9c6eafe49 most protocol attributes, and step description and step expected result now dont get cut tables when they are at max character limit 2018-02-06 12:04:24 +01:00
Zanz2
9b5ddc6789 moved code from older branch to new master 2018-02-06 11:03:17 +01:00
Zanz2
748af2cbf7 Fixed the issue, table name defaults to empty string space now 2018-02-06 10:29:49 +01:00
mlorb
553039b7b4 fix type error at changing task at navigation bar after seting due date 2018-01-30 13:29:54 +01:00
Zanz2
0607579d06 Fixes the database error i was having on home machine too, wasnt exclusive to me 2018-01-27 14:57:07 +01:00
Zanz2
70a972c264 Fixed pr and small oversight 2018-01-27 14:33:01 +01:00
Zanz2
98b3ddbdb0
Merge branch 'master' into images_not_imported_SCI1807 2018-01-26 15:13:40 +01:00
Zanz2
a15e624b06
Merge pull request #965 from Zanz2/sub_prot_2short_SCI1995 
Changed sub protocol name length limit to limit of protocol titles on scinote [SCI-1995]
 2018-01-26 15:08:03 +01:00
Zanz2
48b48c945c Refactored hound errors, now that rubocop works 2018-01-26 11:17:49 +01:00
Zanz2
020e9ddc16 Merge branch 'images_not_imported_SCI1807' of https://github.com/Zanz2/scinote-web into images_not_imported_SCI1807 2018-01-26 11:08:47 +01:00
Zanz2
a48fc168a9 deleted un needed function 2018-01-26 11:05:19 +01:00
Zanz2
6f56f829da Now protocols name from attached protocol is shortened based on title limit length (255 characters),also has same limitations as scinote title 2018-01-26 10:49:38 +01:00
Zanz2
4ee51959eb fixed hound 2018-01-26 09:56:59 +01:00
Zanz2
4ed1555ebb small fix, ordering 2018-01-26 09:45:41 +01:00
Zanz2
346f9feaef Refactored pull request, but also just did a quick fix on a bug where special characters in titles of steps (% & #) got escaped by sanitize helper, now the string gets sanitized first, then the special characters get unescaped by CGI. unescape html 2018-01-26 09:34:58 +01:00
Zanz2
24e772d7e5 Merge branch 'steps_order_SCI1816' of https://github.com/Zanz2/scinote-web into steps_order_SCI1816 2018-01-26 08:26:38 +01:00
Zanz2
00ac774fde Made images now display in protocol description, before_start, warning,guidelines, manuscript_citation, and also in Step description and step expected result 2018-01-24 13:40:13 +01:00
Zanz2
7fe1c20ebe Finished the protocol reorder functions and implemented them 2018-01-24 09:31:43 +01:00
Zanz2
96253c1089 Made some functions to help solve reordering of the protocols io steps 2018-01-23 18:40:23 +01:00
zmagod
f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
Zanz2
b105920d4e
Merge pull request #901 from Zanz2/code_refactor 
Protocols.io code beautification and refactoring [SCI-1929]
 2018-01-12 12:34:00 +01:00
Zmago Devetak
0e6931b1f3
Merge pull request #908 from ZmagoD/zd_SCI_1866 
Wrong date at activity
 2018-01-08 14:20:26 +01:00
zmagod
eb8124ea5a follow @duco 's suggestions 2018-01-05 17:08:00 +01:00
mlorb
99185871c4 fix naming things 2018-01-05 15:15:50 +01:00
Zanz2
7bad722553 Made small oversight and fixed it 2017-12-24 02:06:14 +01:00
Zanz2
83e1b04c7a Fixed pull request 2017-12-24 01:49:04 +01:00
Zanz2
53561ffd84 Refactored according to PR 2017-12-15 20:39:15 +01:00
mlorb
2936770c01 refactor can view team users ATWHO permission 2017-12-14 14:18:18 +01:00
mlorb
7c1ae6bc82 refactor manage repository permissions 2017-12-14 14:18:18 +01:00
mlorb
2918a9833d refactor manage repository column permissions 2017-12-14 14:18:18 +01:00
mlorb
3f5e9e60b7 refactor view repository permission 2017-12-14 14:18:18 +01:00
mlorb
079ac7a4d3 refactor manage repository row permissions 2017-12-14 14:18:18 +01:00
mlorb
740ecc674b refactor view repositories permission 2017-12-14 14:18:18 +01:00
mlorb
3ca51f097f refactor manage sample permissions again by removing authorship and refactor manage sample elements permissions 2017-12-14 14:18:17 +01:00
mlorb
29f9414839 refactor create project permission 2017-12-14 14:18:17 +01:00
mlorb
72023c7dfe refactor update/delete sample permissions 2017-12-14 14:18:17 +01:00
mlorb
b09377cd8d refactor update sample permission 2017-12-14 14:18:17 +01:00
mlorb
f801ed8eb6 refactor view/export samples permission 2017-12-14 14:18:16 +01:00
mlorb
0d37f9c85a refactor clone protocol permission 2017-12-14 14:18:16 +01:00
mlorb
f6d36ae6a2 refactor update protocol type in repository 2017-12-14 14:18:16 +01:00
mlorb
806fcbce36 refactor update protocol in repository permission 2017-12-14 14:18:16 +01:00
mlorb
e0d1ae174e refactor read protocol in repository permission 2017-12-14 14:18:15 +01:00
mlorb
ccc2451494 refactor create sample permissions 2017-12-14 14:18:15 +01:00
mlorb
43c01b74b1 refactor create protocol permission 2017-12-14 14:18:14 +01:00
mlorb
a0b2d3f5ef refactor read_team permission 2017-12-14 14:18:14 +01:00
Zmago Devetak
00be4460cc
Merge pull request #806 from ZmagoD/disable_tiny_mce_asset_unless_step 
Fixes bug with embedded images [SCI-1624]
 2017-12-12 09:53:24 +01:00
Oleksii Kriuchykhin
6256acdfea Rename notifications settings accessor [SCI-1864] 2017-12-07 13:59:33 +01:00
Zanz2
b0012ab936 Simplified repeating method calls 2017-12-03 16:50:06 +01:00
Zanz2
fcbd956d6e Finished code beautification 2017-12-03 01:17:49 +01:00
Zanz2
835ac6910f Code refactor part 1 2017-12-02 00:29:47 +01:00
Zmago Devetak
205d3b3d8f
Merge pull request #894 from ZmagoD/zd_SCI_1650 
Adds task to copy images [fixes SCI-1650]
 2017-12-01 17:32:09 +01:00
zmagod
7442684846 fix protocol preview, remove unneeded functions, fix copy paste tokens 2017-11-28 14:16:20 +01:00
zmagod
e233fbe1d8 fix image removing from tinymce 2017-11-28 11:01:07 +01:00
zmagod
e69e9f6794 remove unneeded comment and add tiny_mce_asset regex in a constant 2017-11-24 17:04:01 +01:00
zmagod
066c782cd2 Merge branch 'master' of https://github.com/biosistemika/scinote-web into disable_tiny_mce_asset_unless_step 2017-11-24 16:29:32 +01:00
Zanz2
0e574b2f15 removed un needed limits 2017-11-24 11:49:57 +01:00
Zanz2
e7e37939a9 quick fix to expected result losing html 2017-11-24 11:18:12 +01:00
Zanz2
dc5904aed9 Fixed this jira issue and added workarounds for bugs 2017-11-24 01:45:40 +01:00
mlorb
c46d630f0b
Merge pull request #891 from mlorb/ml-sci-1617 
Add copying of TinyMce assets when cloning the protocol [SCI-1617]
 2017-11-23 14:31:29 +01:00
Zanz2
764e5259d1 Fixed last review, and a bug i found 2017-11-22 23:38:22 +01:00
Mojca Lorber
fe5828fa97 add copying of TinyMce assets when cloning the protocol 2017-11-22 16:47:21 +01:00
Zanz2
692ed62d6d made case statement nicer 2017-11-21 21:27:19 +01:00