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279 commits

Author SHA1 Message Date
Oleksii Kriuchykhin 488fc99dae Fix protocol metadata editing in repository [SCI-3477] 2019-05-16 17:11:17 +02:00
aignatov-bio 71b3228310
Update protocol preview style [SCI-3416] (#1729) 
* Update protocol appearance
 2019-05-13 10:45:12 +02:00
aignatov-bio 634b58bd6a
Various UX improvements for note section [SCI-3444] (#1742) 
* Various UX improvments for note section
 2019-05-11 16:04:28 +02:00
aignatov-bio 84993ea3ef
Update protocol repository for new description format [SCI-3371] (#1689) 
* Update protocol repository for new description format

* move image clone method to concerns
 2019-04-24 13:34:56 +02:00
Urban Rotnik 11a7a975af Merge branch 'features/scinote-improvements' into master-with-note-section 2019-04-23 14:50:03 +02:00
Anton Ignatov aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
aignatov-bio 6b45dcd475
Update eln export for new tinyMCE image format (#1680) 2019-04-19 14:44:40 +02:00
aignatov-bio f47d0e2932
Merge pull request #1561 from aignatov-bio/ai-sci-3131-improve-image-file-upload 
Improve the image file upload into RTE input fields [SCI-3131]
 2019-04-10 14:04:06 +02:00
Jure Grabnar 613843d095 Temp commit 2019-04-04 16:58:55 +02:00
Jure Grabnar 26848ecaef Refactor step position + 1 into a method 2019-04-03 13:07:30 +02:00
Jure Grabnar 171b2eeedc Remove the title of protocol steps when empty 
Closes SCI-3072
 2019-03-25 09:36:56 +01:00
Anton Ignatov 4ec0a3c871 Update TinyMCE image loader for new fields 2019-03-22 10:52:26 +01:00
Anton Ignatov 07c2819163 refactoring tinymce image uploading 2019-03-20 14:46:54 +01:00
Matej Zrimšek 838455af0d Fix protocols.io Date handling at import 2019-01-12 19:28:45 +01:00
Matej Zrimšek b64df7d8cc Fix additional Date and Time display formats 2019-01-08 06:29:37 +01:00
Alex Kriuchykhin 20e2cbf0ca
Merge pull request #1391 from okriuchykhin/ok_SCI_2880 
Fix smart annotations rendering issues [SCI-2880]
 2018-11-28 09:47:20 +01:00
Alex Kriuchykhin d475197e65
Merge pull request #1396 from okriuchykhin/ok_SCI_2882 
Fix handsontable initialization [SCI-2882]
 2018-11-26 15:19:23 +01:00
Jure Grabnar 7812f70c2f
Merge pull request #1393 from jbargu/jg_2790_protocolsio_fix 
Protocols - import from protocols.io doesn't work
 2018-11-26 14:56:25 +01:00
Oleksii Kriuchykhin 2e00f1546a Fix handsontable initialization [SCI-2882] 2018-11-26 14:11:46 +01:00
Jure Grabnar 0086e4dcf3 Catch some of templates error when import protocols.io 2018-11-26 13:43:05 +01:00
Jure Grabnar 1c7a051551 Catch all errors on PIO import and show message 2018-11-23 20:47:48 +01:00
Jure Grabnar 2834edb286 Add command/subprotocol/safety for PIO 2018-11-23 20:13:34 +01:00
Jure Grabnar c00b08b101 Add sw_package and dataset component for PIO 2018-11-23 19:44:10 +01:00
Jure Grabnar 2c8a7f8eca Add last_modified evaluation for PIO import 2018-11-23 17:51:47 +01:00
Jure Grabnar 87d5e5029a Fix publish_date in PIO import 2018-11-23 17:37:26 +01:00
Jure Grabnar 76c2da4bae Add uniq tables 2018-11-23 16:30:29 +01:00
Oleksii Kriuchykhin b926cadba4 Fix smartannotations rendering issues [SCI-2880] 2018-11-23 15:07:08 +01:00
Oleksii Kriuchykhin 380a96dcce Add caching for step and result fragments [SCI-2830] 2018-11-14 11:57:53 +01:00
Zanz2 0ed62b7375 refactored according to PR review 2018-08-21 11:35:22 +02:00
Zanz2 dfcaa40f1a
Merge branch 'master' into zz_refactor_icons_sci_2445_v2 2018-08-14 13:33:43 +02:00
Zanz2 45a4c1c598 changed the icons as per last comment in jira issue 2018-08-14 13:26:48 +02:00
Oleksii Kriuchykhin 38c36ab798 Fix modals handling with Turbolinks [SCI-2253] 2018-08-02 11:25:14 +02:00
Oleksii Kriuchykhin b2bd1cb849 Upgrade to Turbolinks 5 [SCI-2253] 2018-07-27 17:26:46 +02:00
Oleksii Kriuchykhin 6669beaf0e Change icons throughout the rest of application [SCI-2445] 2018-07-27 15:27:08 +02:00
Oleksii Kriuchykhin a169639b3c Fix uploaded file max size validation in JS [SCI-2590] 2018-07-05 15:23:26 +02:00
zmagod db1944cc90 move maximum file size limit to an ENV variable [fixes SCI-2415] 2018-06-19 14:15:14 +02:00
mlorb f02363dfce fix error if user is not assigned to any teams 2018-05-25 17:14:22 +02:00
mlorb c5e62207eb fix bug with protocol preview does not open on protocols containing files 2018-05-24 11:51:27 +02:00
mlorb c4ecfc4d38 Change icons throughout sciNote - navigation, project, task cards 2018-05-22 16:55:58 +02:00
mlorb ed27a7a62a some extra restyling/unifying off app 2018-05-11 18:02:17 +02:00
mlorb 7df40e56c7 UI/UX restyle - fixes throughout application part one 2018-05-08 16:33:42 +02:00
mlorb 88d5ba369d
Merge branch 'ux-release-1' into ml-sci-2244 2018-04-26 14:07:03 +02:00
Luka Murn cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
mlorb 9e11f3b220 update buttons positions and wording throughout app 2018-04-25 13:57:12 +02:00
mlorb c08d72be36 remove breadcrumbs throughout application 2018-04-17 17:00:04 +02:00
zmagod 233e73c709 adds asset preview link to repository row modal and to table row item [fixes SCI-2110] 2018-04-10 17:06:53 +02:00
Zanz2 cff2f933a0 removed byebug :D 2018-04-04 15:19:00 +02:00
Zanz2 ec743a7420 fixed the issue 2018-04-04 15:16:31 +02:00
Oleksii Kriuchykhin 3b7977ee3b Merge latest changes from ux-release-1 [SCI-2217] 2018-04-04 14:20:34 +02:00
Zanz2 1606982966 found a hackish fix by doing a manual ajax call and some other things with jquery 2018-04-02 19:56:25 +02:00
Oleksii Kriuchykhin cc5d8550b1 Refactor file preview modal [SCI-2217] 2018-03-30 11:50:28 +02:00
mlorb 4bf9369bc5 refactor buttons 2018-03-29 13:58:14 +02:00
zmagod c46da5cc67 fixes import protocol bug for guest user [fixes SCI-2197] 2018-03-19 16:10:28 +01:00
mz3944 bb21f6543c
Merge pull request #1004 from mz3944/mz-SCI-2011 
Wrapping up the permissions [SCI-2011]
 2018-03-06 07:10:40 +01:00
Zanz2 c5728c4018
Merge branch 'master' into null_step_crash_sci2043 2018-03-05 16:37:24 +01:00
Zanz2 5c93bd9676 Tables now have fixed 200 px height, which solves various issues and the scrollbar clipping to the bottom 2018-02-16 14:14:51 +01:00
Zanz2 673901fb01
Merge pull request #984 from Zanz2/yellow_flashv3_SCI1834 
Fixed tables getting cut when certain attributes are at max length [SCI-1834]
 2018-02-16 12:52:51 +01:00
Matej Zrimšek 5bda53eebf Overall refactoring of all canaid permissions and code related to their calls. 2018-02-16 10:54:06 +01:00
Zanz2 b9db39f87d removing last commit 2018-02-16 00:00:53 +01:00
Zanz2 95501eb046 saving work for later 2018-02-15 20:01:36 +01:00
Zanz2 ad8f93b57f
Merge pull request #991 from Zanz2/missplaced_authors_sci1808 
protocols io authors are now real authors, not user that added the protocol [SCI-1808]
 2018-02-15 16:53:39 +01:00
Matej Zrimšek d6e7ef465c Grouped remaining permissions for experiment, protocol, task, and partially step levels. [SCI-1964] 2018-02-14 14:19:22 +01:00
Zanz2 128f15f984
Merge pull request #990 from Zanz2/code_formatting_sci1822 
Commands in protocols io steps are now properly formatted like code [SCI-1822]
 2018-02-08 08:52:44 +01:00
Zanz2 49a4d9cf23 Tables now no longer have huge whitespace below them, it is now fixed 300 pixels and when its too big the table gets a scrollbar 2018-02-07 15:50:42 +01:00
Zanz2 60aa1a0953 Authors are now displayed as actual authors, not the person that added the protocol, and the created at date from protocols io is in protocol info, like it was before 2018-02-07 15:12:03 +01:00
Zanz2 a6356d2420 Fixed newline styling, now code is styled in newlines, and since \n doesnt work i change it to <br> with gsub and that allows code to be written into multiple lines 2018-02-07 14:46:25 +01:00
Zanz2 efaf5ad721 Commands now get styled like code 2018-02-07 13:51:22 +01:00
Zanz2 367eff6401 re-pushing this, this got merged into master already but i accidentally deleted it when merging two branches 2018-02-07 11:17:53 +01:00
Zanz2 dac59cf4d0 Refactored to PR, deleted unrelated things 2018-02-06 09:06:33 +01:00
Zanz2 70a972c264 Fixed pr and small oversight 2018-01-27 14:33:01 +01:00
Zanz2 2a287193b7 Merge branch 'images_not_imported_SCI1807' of https://github.com/Zanz2/scinote-web into images_fix 2018-01-27 13:50:35 +01:00
Zanz2 e8f6dc0d24
Merge pull request #962 from Zanz2/missing_error_SCI1993 
A red error messagge is now displayed when not selecting protocol [SCI-1993]
 2018-01-26 16:00:15 +01:00
Zanz2 1d4ce42f23 fixed according to PR 2018-01-26 15:29:13 +01:00
Zanz2 98b3ddbdb0
Merge branch 'master' into images_not_imported_SCI1807 2018-01-26 15:13:40 +01:00
Zanz2 020e9ddc16 Merge branch 'images_not_imported_SCI1807' of https://github.com/Zanz2/scinote-web into images_not_imported_SCI1807 2018-01-26 11:08:47 +01:00
Zanz2 6f56f829da Now protocols name from attached protocol is shortened based on title limit length (255 characters),also has same limitations as scinote title 2018-01-26 10:49:38 +01:00
Zanz2 fc541147c8 A red error messagge is now displayed when selecting no protocol and pressing upload on protocols io import, and after the modal is closed the messagge is gone 2018-01-25 15:54:38 +01:00
zanzdebian 8bd8c34c4d Fixed some styling bugs that happened after the merge, its using new function now, with old style, ( the old style turns the mouse cursor into a hand when it hovers over button) 2018-01-25 13:45:35 +01:00
Zmago Devetak 1e407bd9c5
removes unneeded classes 2018-01-25 11:00:48 +01:00
Zanz2 00ac774fde Made images now display in protocol description, before_start, warning,guidelines, manuscript_citation, and also in Step description and step expected result 2018-01-24 13:40:13 +01:00
zmagod f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
Zanz2 b105920d4e
Merge pull request #901 from Zanz2/code_refactor 
Protocols.io code beautification and refactoring [SCI-1929]
 2018-01-12 12:34:00 +01:00
Zanz2 3c6d37ce64 Fixed according to PR review 2018-01-11 18:37:36 +01:00
mlorb 99185871c4 fix naming things 2018-01-05 15:15:50 +01:00
Zanz2 83e1b04c7a Fixed pull request 2017-12-24 01:49:04 +01:00
Zanz2 53561ffd84 Refactored according to PR 2017-12-15 20:39:15 +01:00
mlorb 806fcbce36 refactor update protocol in repository permission 2017-12-14 14:18:16 +01:00
mlorb e0d1ae174e refactor read protocol in repository permission 2017-12-14 14:18:15 +01:00
mlorb 43c01b74b1 refactor create protocol permission 2017-12-14 14:18:14 +01:00
Zmago Devetak 00be4460cc
Merge pull request #806 from ZmagoD/disable_tiny_mce_asset_unless_step 
Fixes bug with embedded images [SCI-1624]
 2017-12-12 09:53:24 +01:00
Zanz2 11dc3be9d4 It is now possible to scroll down preview modal 2017-12-10 01:41:21 +01:00
Zanz2 d0a9198408 Fixed the styling 2017-12-10 01:20:08 +01:00
Zanz2 fcbd956d6e Finished code beautification 2017-12-03 01:17:49 +01:00
Zanz2 835ac6910f Code refactor part 1 2017-12-02 00:29:47 +01:00
zmagod 7442684846 fix protocol preview, remove unneeded functions, fix copy paste tokens 2017-11-28 14:16:20 +01:00
Zanz2 bb8aef3b73
Merge pull request #893 from Zanz2/step_desc_2small_SCI-1833 
Fixed validations lengths and added workarounds for bugs [SCI-1833]
 2017-11-24 17:55:20 +01:00
Zmago Devetak 027f4a5921
Merge pull request #890 from ZmagoD/zd_SCI_1651 
export and import RTE images
 2017-11-24 16:28:28 +01:00
zmagod d200e355ed follow @Ducz0r 's suggestions 2017-11-24 11:45:07 +01:00
Zanz2 dc5904aed9 Fixed this jira issue and added workarounds for bugs 2017-11-24 01:45:40 +01:00
Zanz2 764e5259d1 Fixed last review, and a bug i found 2017-11-22 23:38:22 +01:00