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812 commits

Author SHA1 Message Date
aignatov-bio
dc91893d7e Refactor checklist column data structure 2019-12-18 14:10:41 +01:00
Urban Rotnik
d35f7119b7 Moved delete action to service 2019-12-10 14:29:37 +01:00
Urban Rotnik
82b93bf9a4 Fix failing tests 2019-12-10 14:29:35 +01:00
Urban Rotnik
508a9b4e3e RepositoryRows controller refactor 2019-12-10 14:29:35 +01:00
Urban Rotnik
b68aadf506 Update params nesting 2019-12-10 14:29:35 +01:00
Urban Rotnik
dd9880f030 Add CreateRepositoryRowService 2019-12-10 14:29:34 +01:00
Urban Rotnik
98b89e9e80 Add UpdateRepositoryRowService 2019-12-10 14:29:34 +01:00
Urban Rotnik
0c990ef8cf Add functions for creating new cells with values 2019-12-10 14:29:34 +01:00
Urban Rotnik
5b710241e1 Add delete condition to update_data method on CellValues 2019-12-10 14:29:33 +01:00
Urban Rotnik
79a50860b6 Add methods update_data, data_changed, formatted for all types off ColumnValues 2019-12-10 14:29:29 +01:00
Urban Rotnik
e764e856d8 Fix syntax error 2019-12-10 09:40:40 +01:00
aignatov-bio
09079fbcda Fix naming and tests 2019-12-09 13:48:36 +01:00
aignatov-bio
643abc3fd7 Fixes tests 2019-12-09 13:48:36 +01:00
aignatov-bio
d8676596f1 Add checklists column type 2019-12-09 13:48:36 +01:00
Urban Rotnik
eca0c84bbd Fix tests 2019-12-06 14:20:37 +01:00
Urban Rotnik
65d8d0e35b DateTime HTML and JS simplified 2019-11-29 10:19:57 +01:00
Urban Rotnik
5ae29d549e Add manage modal for DateTime values 2019-11-29 10:19:55 +01:00
Urban Rotnik
f39af1916f Split DateTime and DateTimeRange column types, rename DateType table 2019-11-29 10:19:16 +01:00
Urban Rotnik
d1f23d008a Fix tests 2019-11-29 10:19:16 +01:00
Urban Rotnik
2a20ad68a3 Add range column to RepositoryColumn 2019-11-29 10:19:14 +01:00
Urban Rotnik
fe4aa12ced Add DateTime columns CRUD endpoints 2019-11-29 10:19:14 +01:00
Urban Rotnik
b591346a3f Add DateTime type column 2019-11-29 10:19:13 +01:00
Urban Rotnik
b2ce600820 Add delimiter column for repository_column 2019-11-29 10:19:10 +01:00
Urban Rotnik
804e36650e Add service for updating ListColumnItems 2019-11-29 10:19:09 +01:00
Urban Rotnik
1e8261ac2a Update InventoryColumns API for new Status Type 2019-11-29 10:19:07 +01:00
Urban Rotnik
7ab12baef9 Add API endpoint for StatusItems 2019-11-29 10:19:07 +01:00
Oleksii Kriuchykhin
73be1181ac Fix failing tests for repository states [SCI-4070] 2019-11-29 10:19:05 +01:00
Mojca Lorber
305104f639 Refactor text inventory type 2019-11-29 10:17:53 +01:00
Urban Rotnik
f645ff52ab Refactor ColumnServices 2019-11-29 10:17:52 +01:00
Urban Rotnik
28d7a4f284 Refactor FileColumnController 2019-11-29 10:17:51 +01:00
Urban Rotnik
1720623665 Refactor RepositoryListColumn controller 2019-11-29 10:17:50 +01:00
Urban Rotnik
14b43d516e Add UpdateStatusColumnService service 2019-11-29 10:16:45 +01:00
Urban Rotnik
de2ee66dd4 Add DeleteStatusColumnService service 2019-11-29 10:16:44 +01:00
Urban Rotnik
5930bdd794 Add StatusColumnsController 2019-11-29 10:16:44 +01:00
Urban Rotnik
bbb8c46fe2 Add CreateStatusColumnService service 2019-11-29 10:16:44 +01:00
Urban Rotnik
c00a837105 Add models for RepositoryStatus column type 2019-11-29 10:16:43 +01:00
Oleksii Kriuchykhin
5e8afae1f0 Fix failing tests [SCI-3988] 2019-11-18 15:15:44 +01:00
Oleksii Kriuchykhin
b2862b6c9e Remove Paperclip DB columns and fix experiment templates [SCI-3988] 2019-11-18 14:16:28 +01:00
aignatov-bio
b1f9e7f1ca Fix global activities jsonb field [SCI-3830] (#2030) 
* Fix global activities jsonb field

* Fix tests
 2019-11-18 13:59:54 +01:00
Urban Rotnik
54c473fa6b Tests fix 2019-11-18 11:11:41 +01:00
Urban Rotnik
b8bf7bbd9b Rename validation 2019-11-18 11:11:40 +01:00
Urban Rotnik
d5716c4260 Add rake task for fixing invalid canvas positions 2019-11-18 11:11:40 +01:00
Urban Rotnik
43e3763ec8 Update x, y, experiment unqiue validation 
[SCI-3887]
 2019-11-18 11:11:40 +01:00
Urban Rotnik
8b5e346770 Remove file deletion manually 2019-11-18 11:11:39 +01:00
Urban Rotnik
cc9d987321 Add update result(file) and create result(file) API endpoint 2019-11-18 11:11:38 +01:00
Urban Rotnik
060125a1c4 Add file size validation 2019-11-18 11:11:38 +01:00
Urban Rotnik
1be88baab1 Add API endpoint for Attachments resource 2019-11-18 11:11:38 +01:00
Urban Rotnik
e7083e188c Add API endpoint for Step resource 
[SCI-3835]
 2019-11-18 11:11:37 +01:00
Urban Rotnik
24033bec7a Add API endpoint for Task creation 2019-11-18 11:11:37 +01:00
Urban Rotnik
7802d5ee8b Add uniq validation for x and y position scoped to experiment 2019-11-18 11:11:36 +01:00
aignatov-bio
b9a34fa809 Fix placeholder for authors 2019-11-15 16:23:48 +01:00
aignatov-bio
1488f75e26 Add activities 2019-11-13 13:57:04 +01:00
Oleksii Kriuchykhin
9d2ac4179e Fix failing tests [SCI-3908] 2019-10-04 13:02:18 +02:00
Oleksii Kriuchykhin
0475394b08 Fix test [SCI-3881] 2019-09-16 13:03:41 +02:00
Oleksii Kriuchykhin
3509543e7b Merge branch 'master' into ok_SCI_3881 2019-09-16 11:56:49 +02:00
Oleksii Kriuchykhin
bc38c6b29e Fix failing test [SCI-3745] 2019-09-16 10:26:13 +02:00
Oleksii Kriuchykhin
c068901b00 Upgrade Rails to 6.0 [SCI-3745] 2019-09-12 17:24:08 +02:00
aignatov-bio
1f12a63a25
Fix counter on task inventory and failing test (#2043) 2019-09-10 13:51:37 +02:00
Luka Murn
bff4029e8d Minor typo fix in tests 2019-09-05 11:13:01 +02:00
Oleksii Kriuchykhin
267c53c2d2 Refactor inventory sharing logic [SCI-3803] 2019-08-29 17:21:49 +02:00
aignatov-bio
0810699770
Update shared inventory permissions [SCI-3802] (#2009) 
* Update shared inventory permissions

* Fix tests and simplify condition for placeholder
 2019-08-23 10:57:02 +02:00
Luka Murn
9ad2490285 Remove the deprecated archive endpoint controller rspec test 2019-08-21 16:00:04 +02:00
aignatov-bio
f94b8165dc
Fix marvinjs edit button and icon (#1985) 2019-08-21 11:15:57 +02:00
Urban Rotnik
89f289660b Add share_with_all feature to service, add new activities 2019-08-14 11:03:15 +02:00
Urban Rotnik
0ce331227c Update permission and model to share repository over all teams 2019-08-13 14:07:24 +02:00
aignatov-bio
737f9e572c
Replace marvinJS logo and fix some merge issues [SCI-3731] (#1976) 
* Replace marvinJS logo and fix some merge issues

* Fix tests
 2019-08-13 11:04:19 +02:00
Oleksii Kriuchykhin
c352a73d79 ActiveStorage fixies after latest master merge [SCI-3757] 2019-08-09 14:56:00 +02:00
Urban Rotnik
786716974b Add validation for team on TeamRepository 2019-08-09 14:15:50 +02:00
Urban Rotnik
32783576c1 Add controller action 'multiple_update' 
Add controller action, add update permission activity, add JS for handling ajax req
 2019-08-09 14:15:50 +02:00
Urban Rotnik
6cbece9f86 Add service for multiple share 2019-08-09 14:15:49 +02:00
Mojca Lorber
c21a648c29 Fix failing tests 2019-08-09 14:13:02 +02:00
Urban Rotnik
171cdb319b Add ShareInventory activities 2019-08-09 14:13:01 +02:00
Mojca Lorber
b005f90e95 Add tests for permission can_read_repository 2019-08-09 14:13:01 +02:00
Urban Rotnik
1a77702fa7 Add uniq index for Repository and Team in TeamRepositories 2019-08-09 14:13:00 +02:00
Urban Rotnik
5456c1e38a Add basic controller for TeamRepositories 2019-08-09 14:12:59 +02:00
Urban Rotnik
077369d960 Update permissions for Repositories 2019-08-09 14:12:59 +02:00
Urban Rotnik
f569411bc7 Add TeamRepository model 2019-08-09 14:12:59 +02:00
Oleksii Kriuchykhin
973efa55e1 Merge branch 'master' into ok_SCI_3678 2019-08-08 11:17:07 +02:00
Jure Grabnar
c3fd810691 Remove sample_custom_field factory 2019-08-06 23:30:05 +02:00
Jure Grabnar
f71cabcd60 Fix templates tests 2019-08-05 19:05:15 +02:00
Anton Ignatov
e2e876b2a3 Merge branch 'activestorage_migration' into ai-sci-3728-fix-active-storage-tests 2019-08-05 13:51:04 +02:00
Jure Grabnar
c63737f750 Add check_pending! call for test migrations 
Close SCI-3567
 2019-07-31 14:57:47 +02:00
Anton Ignatov
f35f4886a3 Fix markup 2019-07-29 10:18:34 +02:00
Anton Ignatov
a4b2825258 Fix tests for active storage 2019-07-26 15:58:51 +02:00
Anton Ignatov
618f0cc334 Fix tests for services 2019-07-26 14:16:44 +02:00
Anton Ignatov
84fe10df47 Fix tests for models and tema import/export 2019-07-26 12:40:36 +02:00
Luka Murn
83bb89fdf5 Cherry-picked commit from ZZ (and LM)'s various changes 2019-07-26 10:13:14 +02:00
Urban Rotnik
795c355f01
Merge pull request #1915 from urbanrotnik/ur-sci-3531-tests-for-step-components 
Add tests for StepComponents [SCI-3531]
 2019-07-15 13:25:36 +02:00
Jure Grabnar
20120bf2e6 Add test for empty search key 2019-07-15 08:44:02 +02:00
Jure Grabnar
015dae1a05 Fix old tests 2019-07-15 08:27:34 +02:00
Urban Rotnik
5cf100a787 Show 'published_on' instead of 'created_on' on external_protocols list 2019-07-12 16:56:07 +02:00
Anton Ignatov
ffd415d409 Inital refactor for Assets model 2019-07-12 15:02:06 +02:00
Anton Ignatov
57a273d5d0 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 11:34:41 +02:00
Jure Grabnar
ed5eb39bb2 Fix tests for GET show on protocols.io 2019-07-10 19:20:40 +02:00
Urban Rotnik
b9bec32316 Add tests for StepComponents 2019-07-10 12:48:08 +02:00
Urban Rotnik
be77746aef Fix description styling of components 2019-07-09 13:41:51 +02:00
Jure Grabnar
05f2210002
SCI-3650, SCI-3655 Fix empty file name, empty description when… (#1892) 
SCI-3650, SCI-3655 Fix empty file name, empty description when parsing tables
 2019-07-09 10:24:03 +02:00
Jure Grabnar
ae7da78bff
Merge pull request #1897 from jbargu/jg_sci_3646 
[SCI-3646] Add paging functionality to external protocols
 2019-07-08 13:06:19 +02:00
Miha Mencin
ab9b7a7429
Merge pull request #1902 from biosistemika/release-1.16.6 
Merge 'release-1.16.6' into 'master'
 2019-07-08 12:49:40 +02:00
aignatov-bio
291563c80e
Fix tests for 1.16.6 release (#1903) 
* Fix tests for 1.16.6 release
 2019-07-08 11:09:24 +02:00
Oleksii Kriuchykhin
9d926dc956 Refactor TinyMce assets, user avatars, zip files [SCI-3539] 2019-07-05 16:56:05 +02:00
Jure Grabnar
6e1d4c205c Add tests for page_id for search service 2019-07-04 16:02:29 +02:00
Jure Grabnar
9f42f6f24b Fix normalizer tests caused by pagination 2019-07-04 15:45:09 +02:00
Jure Grabnar
20134c9f8a
Features/protocolsio integration (#1893) 
Features/protocolsio integration
 2019-07-03 17:32:20 +02:00
Jure Grabnar
8866d98512 Fix empty file name on protocols.io 
Closes SCI-3650
 2019-07-03 16:11:51 +02:00
Miha Mencin
b709c0ec3c fix the normalized protocol fixture 2019-07-03 11:49:01 +02:00
Anton Ignatov
c9ae9f056e Merge branch 'okriuchykhin-ok_SCI_3539' into features/marvinjs-integration 2019-07-01 10:44:29 +02:00
Anton Ignatov
390002f40f Merge branch 'ok_SCI_3539' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_3539 2019-07-01 10:12:26 +02:00
Anton Ignatov
6be227b2d3 Merge branch 'master' of https://github.com/biosistemika/scinote-web into features/marvinjs-integration 2019-06-28 10:47:38 +02:00
Jure Grabnar
9be4fc2470 Fix tests 2019-06-28 02:19:06 +02:00
Urban Rotnik
9cb4454537 New implementation for attachments creation 2019-06-27 17:02:06 +02:00
Jure Grabnar
82fb8ebd2e
Implement protocols.io error handling (#1869) 
Implement protocols.io error handling
 2019-06-27 16:35:55 +02:00
Jure Grabnar
7fc1243e48 Add ProtocolNormalizer errors tests 2019-06-27 14:59:03 +02:00
Jure Grabnar
06b8d1fda7 Update ApiClient tests 
Closes SCI-3434
 2019-06-27 14:54:19 +02:00
Mojca Lorber
9fd83d54a0 Put network error handeling into api and refactor errors 2019-06-26 14:04:03 +02:00
aignatov-bio
83bc9eb22f
Merge pull request #1839 from aignatov-bio/ai-sci-3369-activity-for-edited-image-annotation 
Adding new activities for image editing [SCI-3369]
 2019-06-24 10:31:39 +02:00
Anton Ignatov
7e5c39d3e4 Merge branch 'master' into features/marvinjs-integration 2019-06-21 14:51:45 +02:00
Anton Ignatov
6530786f17 Fix tests 2019-06-20 16:05:19 +02:00
aignatov-bio
a00ec02983
Add tests for edit WOPI activities [SCI-3238] (#1822) 
* Add tests for edit wopi activities
 2019-06-20 09:31:29 +02:00
Anton Ignatov
6f1f6e297c Fix tests 2019-06-19 15:40:27 +02:00
Urban Rotnik
bf6041e13d Update sanitization of html descriptions 2019-06-19 11:05:22 +02:00
Urban Rotnik
7e69375016 Drop header column and row when extract tables 2019-06-19 10:47:38 +02:00
Urban Rotnik
2a579f2240 Add Warnings, Before start and Guidelinese to protocol description 2019-06-19 09:02:42 +02:00
Mojca Lorber
ebcaa4b014 Implement protocols.io error handling for api client and normalizer 2019-06-18 14:01:57 +02:00
Urban Rotnik
c691ad80b5 Add fields to query params for ApiClient 2019-06-17 12:24:16 +02:00
Urban Rotnik
88d96c0938 Use service in controller 2019-06-17 12:24:15 +02:00
Urban Rotnik
7fad5fc594 Add search service and normalizer for list 2019-06-17 12:24:15 +02:00
Jure Grabnar
4f6397b5b9 Add form to external_sources#new action 
Closes SCI-3532
 2019-06-17 12:24:15 +02:00
Jure Grabnar
c8b8bcffdb Add external_protocols#show action 2019-06-17 12:24:14 +02:00
Jure Grabnar
f7c6f78925 Add external_protocols#index action 2019-06-17 12:24:14 +02:00
Jure Grabnar
2a61075156 Add ExternalProtocols#create action and tests 2019-06-17 12:24:14 +02:00
Jure Grabnar
9baa66c998 Refactor OnlineSources -> ExternalProtocols 2019-06-17 12:24:13 +02:00
Jure Grabnar
eb0d677a36 Refactor pio_protocol -> built_protocol 2019-06-17 12:24:13 +02:00
Jure Grabnar
94e7fe1e6c OnlineSourcesController skeleton and #new action tested 2019-06-17 12:24:13 +02:00
Urban Rotnik
0d43ecdfab Import protocol service after object is built 2019-06-17 12:24:11 +02:00
Jure Grabnar
eb275c4d12 Add tests for BuildProtocolService and fix bugs 2019-06-17 12:24:11 +02:00
Jure Grabnar
362b0cd45d Hound fixes 2019-06-17 12:24:11 +02:00
Jure Grabnar
640f6c1211 Fix tests after BuildProtocolFromClientService refactor 
Closes SCI-3544
 2019-06-17 12:24:11 +02:00
Jure Grabnar
1e8627c450 Refactor ImportProtocol service to BuildProtocolService 
Closes SCI-3544
 2019-06-17 12:24:10 +02:00
Urban Rotnik
92c24451d9 Moved normalized_single_protocol.json 2019-06-17 12:24:10 +02:00
Urban Rotnik
a15596a126 Add ImportProtocolService 2019-06-17 12:24:10 +02:00
Urban Rotnik
2bb4f558b7 View rendering simplified, small improvements 2019-06-17 12:24:09 +02:00
Urban Rotnik
807104035c Add StepBuilder, TableBuilder, AssetBuilder for PIO, normalized updated 2019-06-17 12:24:09 +02:00
Urban Rotnik
6a4deb0201 Add ProtocolIntermediateObject 2019-06-17 12:24:09 +02:00
Urban Rotnik
aadf2eecb4 Basic data normalizer for ProtocolIO 2019-06-17 12:24:08 +02:00
Urban Rotnik
ec49388283 Add protocol base normalizer class 2019-06-17 12:24:08 +02:00
Jure Grabnar
c1cee07a63 Extract API client constants to constants.rb 2019-06-17 12:24:08 +02:00
Jure Grabnar
5685709f48 Implement API client for protocols.io 
Closes SCI-3357
 2019-06-17 12:24:07 +02:00
Anton Ignatov
f480c0eb8d Adding new activtiies for image editing 2019-06-14 16:15:30 +02:00
Oleksii Kriuchykhin
109793c7fb Upgrade to Rails 5.2.3 and add ActiveStorage [SCI-3539] 2019-06-13 12:10:44 +02:00
Urban Rotnik
bbe0062bfd Small fixes for factories 2019-06-10 12:24:05 +02:00
Urban Rotnik
1bae169ab0 Delete duplicaed user_project factory 2019-06-10 12:24:05 +02:00
Urban Rotnik
965b7eb58b Add missing factories 2019-06-10 12:24:04 +02:00
Urban Rotnik
f19eeba8dc Add factory valid check for User's associations 2019-06-10 12:24:04 +02:00
Urban Rotnik
ba340f7bee Add valid factory check for Table, Tag, Team 2019-06-10 12:24:03 +02:00
Urban Rotnik
9348886fb1 Minior changes in SystemNotifications tests 2019-06-10 12:24:03 +02:00
Urban Rotnik
15cbd8864c Add valid factory check to Steps models 2019-06-10 12:24:03 +02:00
Urban Rotnik
1e60102a7d Add valid factory check for Sample(s) models 2019-06-10 12:24:02 +02:00
Urban Rotnik
c66aa29227 Add valid factory check for Result(s) models 2019-06-10 12:24:02 +02:00
Urban Rotnik
3adf2bb736 Add factories and validation tests for repositories and related models 
Repositories, cells, columns, values (date, text, asset, list), rows, items
 2019-06-10 12:24:02 +02:00
Urban Rotnik
a7558d83be Add valid factory check for Project, MyModules, notification, protocol 2019-06-10 12:24:01 +02:00
Urban Rotnik
3348b81b14 Checklist, checklist_item, activity, experiment spec and factories updated 2019-06-10 12:24:01 +02:00
Urban Rotnik
6321c0f5c0 Assets spec and factories updated 2019-06-10 12:24:01 +02:00
Alex Kriuchykhin
36255f82ed
Merge pull request #1817 from okriuchykhin/ok_SCI_3522 
Add system notifications service to health check endpoint [SCI-3522]
 2019-06-04 14:41:43 +02:00
Oleksii Kriuchykhin
2842ea381e Fix tests for health check endpoint [SCI-3522] 2019-05-31 16:48:10 +02:00
Luka Murn
98234287f5 Fix failing permission_eval_spec test 2019-05-31 10:33:55 +02:00
Anton Ignatov
c9a29b12ba Merge branch 'master' into features/marvinjs-integration 2019-05-31 10:27:14 +02:00
Oleksii Kriuchykhin
0fd7a4e8f1 Fix failing tests [SCI-3412] 2019-05-27 17:32:21 +02:00
Anton Ignatov
259b75a6ba Merge branch 'master' into features/marvinjs-integration 2019-05-16 09:28:48 +02:00
Anton Ignatov
652fba0e23 Merge branch 'master-with-note-section' 2019-05-13 11:08:11 +02:00
Alex Kriuchykhin
2a7f70929a
Merge pull request #1717 from okriuchykhin/ok_SCI_3368 
Improve clean up of Export All files [SCI-3368]
 2019-05-09 13:37:56 +02:00
Anton Ignatov
dcf94e78e1 Merge branch 'master-with-note-section' into feature/marvinjs-integration 2019-05-08 14:03:41 +02:00
Urban Rotnik
62bc0520e9 Update method last_sync_timestamp from Last to First user 2019-05-08 08:38:11 +02:00
Urban Rotnik
2364c2653f Add bulk insert for UserSystemNotifications, New service for sending emails 2019-05-08 08:38:10 +02:00
Oleksii Kriuchykhin
84712de9ca Fix failing tests [SCI-3368] 2019-05-07 16:42:06 +02:00
Anton Ignatov
d36160386f Merge branch 'master' into master-with-note-section 2019-05-07 13:26:55 +02:00
Anton Ignatov
88e67a16c2 Merge branch 'master-with-note-section' into feature/marvinjs-integration 2019-05-02 16:16:03 +02:00
Oleksii Kriuchykhin
4522e6bf06 Update Ruby to 2.5.5, Rails to 5.1.7 and Devise to 4.6.2 [SCI-3401] 2019-04-30 17:04:48 +02:00
Anton Ignatov
7c55fcf0cf Merge branch 'master' into master-with-note-section 2019-04-30 12:07:59 +02:00
aignatov-bio
687b53feb1
Add new tag activtiies [SCI-3341] (#1712) 
* Add new tag activtiies
 2019-04-30 10:23:09 +02:00
Anton Ignatov
c1214c84f5 Fix factories markup 2019-04-28 19:52:30 +02:00
Anton Ignatov
f80d881847 Fix markup 2019-04-28 19:11:41 +02:00
Anton Ignatov
fe620c4a63 Add marvin model and controller 2019-04-26 22:59:38 +02:00
Mojca Lorber
9e04eb8ea1 Fixes upon Urbans request 2019-04-26 11:34:53 +02:00
Oleksii Kriuchykhin
260782e233 Update tests for new rich text enabled fileds [SCI-3264] 2019-04-24 13:45:29 +02:00
Oleksii Kriuchykhin
7c91b4a255 Merge remote-tracking branch 'scinote/master-with-note-section' into ok_SCI_3266 2019-04-23 17:01:13 +02:00
Oleksii Kriuchykhin
c7a707f9db Fix task clonning with TinyMCE images [SCI-3266] 2019-04-23 15:16:40 +02:00
Anton Ignatov
aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
aignatov-bio
6ac620feb3
Migration for old tinymce assets [SCI-3176] (#1663) 
* adding rake task

* Addign test for update images

* Adding tests for tiny mce model
 2019-04-19 15:24:54 +02:00
aignatov-bio
a75c4c2f91
Update Result API for new tiny mce image format (#1674) 2019-04-19 14:44:16 +02:00
Mojca Lorber
208b7c9939 Fix hound 2019-04-19 13:56:21 +02:00
Mojca Lorber
36e7cfe5c4 Change failing tests 2019-04-19 13:37:52 +02:00
Mojca Lorber
b00cf07684 Add activity for importing inventory items 2019-04-18 15:18:10 +02:00
Oleksii Kriuchykhin
96cf7b4de2 Fix failing tests [SCI-3177] 2019-04-17 12:58:47 +02:00
Urban Rotnik
22af36dd2d Fix for exports_left, fix for some edge cases 2019-04-16 09:59:02 +02:00
Urban Rotnik
caccf8d9f0 Reset counter for export in last 24 hours 
Fix for check if user has avaiable exports, bit refactored increas_counter method.
 2019-04-10 10:56:33 +02:00
Anton Ignatov
94efd2e649 Fix tests 2019-04-02 16:04:50 +02:00
Urban Rotnik
86ddbc68b6 fixup! Show date actual value without link 2019-04-02 14:21:06 +02:00
Anton Ignatov
c9f9523210 Remove src when save description and rename token tag 2019-04-02 13:41:32 +02:00
Urban Rotnik
8eaeeee9f8 Show date actual value without link 2019-04-02 13:15:34 +02:00
aignatov-bio
e6102c72c7
Adding missed activities [SCI-3253] (#1614) 
* Adding missed activties

* Adding test for activities
 2019-04-02 11:50:37 +02:00
Urban Rotnik
b91f08fe99 Add activity for copying Inventory and Invetory item 2019-04-01 15:40:00 +02:00
Jure Grabnar
e165459ef5
Merge pull request #1574 from jbargu/jg_sci_3149_3163 
Valid smart annotation links of smart annotation imported within protocol [SCI-3149, 3163]
 2019-04-01 14:32:54 +02:00
Jure Grabnar
ebc2d8ee75 Fix experiment_spec test using the old variable 
Closes SCI-3244
 2019-04-01 12:50:35 +02:00
Mojca Lorber
f06358b2ae Implement missing tests for global activities (task and protocol activities) 2019-03-27 11:24:44 +01:00
Miha Mencin
4a87216a3d
Merge branch 'master' into features/global-activities 2019-03-25 14:35:24 +01:00
Jure Grabnar
f3e6a35121 Update PermissionEval tests with team check 2019-03-21 10:45:21 +01:00
Mojca Lorber
c55e314ed5 Refactor upon the review requests 2019-03-20 21:34:47 +01:00
Anton Ignatov
5d6f009ee8 fix error for delay deleting 2019-03-20 15:20:31 +01:00
Anton Ignatov
55c93922ea markup fixes 2019-03-20 14:46:54 +01:00
Anton Ignatov
07c2819163 refactoring tinymce image uploading 2019-03-20 14:46:54 +01:00
Jure Grabnar
5de51f9c58 Prevent smart annotations accessing other teams when importing protocol 
Closes SCI-3163
 2019-03-20 12:58:22 +01:00
Mojca Lorber
4f9814b884 Merge branch 'features/global-activities' of github.com:biosistemika/scinote-web into ml-sci-3021 2019-03-20 11:03:00 +01:00
Mojca Lorber
7757096693 Results activities refactoring 2019-03-19 15:33:57 +01:00
Mojca Lorber
1418abc8d7 Reports activities refactoring 2019-03-19 15:33:57 +01:00
Mojca Lorber
d1e38e5bc9 Project activities refactoring 2019-03-19 15:33:57 +01:00
Mojca Lorber
70eebca5ee experiment activities refactoring 2019-03-19 15:33:57 +01:00
Urban Rotnik
fe35c805b7 Add model breadcrumbs, update activities_helper 2019-03-19 14:01:06 +01:00
Urban Rotnik
c65d1af18d Fix failing tests 2019-03-13 09:53:34 +01:00
Urban Rotnik
b6a8556601 Add activities for exporting Projects, Inventory items 2019-03-12 09:15:06 +01:00
Urban Rotnik
e7b57aa4f7 Add creating activities for Team actions 2019-03-12 09:15:06 +01:00
Urban Rotnik
3f18166320 Add Task and TaskTags activities 2019-03-12 09:15:06 +01:00
Urban Rotnik
7a05e817ef Add new Protocol steps activities 2019-03-12 09:15:06 +01:00
Urban Rotnik
b33e95e18a New Protocols actions logging 2019-03-12 09:14:53 +01:00
Urban Rotnik
cfe2888bea Repository columns actions loggin 2019-03-12 09:11:00 +01:00
Urban Rotnik
32422c00eb RepositoryRows actions loggin 2019-03-12 09:11:00 +01:00
Urban Rotnik
2a7bbac733 Repository actions logging 2019-03-12 09:11:00 +01:00
Urban Rotnik
976831e7d3 Edit and Archive experiment activity logging 2019-03-12 09:11:00 +01:00
Urban Rotnik
b8e84b5685 Add logic for saving message items values and types 2019-03-11 08:37:22 +01:00
Urban Rotnik
9ed3313f0f Create project activity refactored 2019-03-11 08:36:15 +01:00
Urban Rotnik
117944117b Add service for activity creation 2019-03-11 08:36:15 +01:00
Miha Mencin
51b3aea49a added uniquness validator and index on user_projects and user_teams relations 
finxing typo, fixied failing test

fixing mistakenly commited file

fixing schema to include bigint migration
 2019-02-27 15:09:47 +01:00
Urban Rotnik
5a123d26ac Activity model update 2019-02-26 07:15:05 +01:00
Urban Rotnik
3ad6cee766 Fix tests, remove nullable field 2019-02-25 16:50:38 +01:00
Urban Rotnik
5b5c6c7122 Changes to Activity model 2019-02-25 16:49:55 +01:00
Miha Mencin
bcd0b433b6
Merge pull request #1514 from biosistemika/features/system-notifications 
Features/system notifications
 2019-02-21 16:38:58 +01:00
aignatov-bio
5f78d83f9c
Changing status from unread to read system notification is not correct one [SCI-3077 and SCI-3075] (#1513) 
* fix dropdown apperance

* Remove search and fix duplicate bug

* Fix specs for new method
 2019-02-21 16:15:13 +01:00
aignatov-bio
5fdba554d2
Merge pull request #1510 from biosistemika/features/system-notifications 
Features/system notifications
 2019-02-20 17:22:57 +01:00
Urban Rotnik
82ea31e275 Add validation limits for system notification fields 2019-02-20 16:05:15 +01:00
Urban Rotnik
7b6c6c414d Merge branch 'master' into features/templates 2019-02-19 14:46:15 +01:00
aignatov-bio
fcdb4e7a92
Merge pull request #1500 from biosistemika/features/system-notifications 
Features/system notifications
 2019-02-19 13:51:18 +01:00
Urban Rotnik
f7c7335bf0 Change test to pass on Travis 2019-02-19 11:23:01 +01:00
Urban Rotnik
f63eaaefe7 Add user_system_notification records when syncing notifications, update email sending 2019-02-19 11:22:58 +01:00
Urban Rotnik
29d77ca81d Add system_notification sending email feature 2019-02-19 11:20:25 +01:00
aignatov-bio
8e905b67b2
System notification navbar menu drop down [SCI 2955] (#1498) 
* Add dropdown menu and icon for system notifications
* Finish system notification dropdown menu and add tests
 2019-02-19 11:08:59 +01:00
Alex Kriuchykhin
185e3b4832
Merge pull request #1495 from okriuchykhin/ok_SCI_3039 
Create templates project when syncing templates if team doesn't have it [SCI-3039]
 2019-02-14 17:40:01 +01:00
Urban Rotnik
5b55860dea Add scheduler 2019-02-13 15:48:15 +01:00
Urban Rotnik
9f3187abdf Add service for sync system notifications 2019-02-13 15:48:15 +01:00
Oleksii Kriuchykhin
da30d187a6 Create templates project when syncing templates if team doesn't have it [SCI-3039] 2019-02-13 15:17:33 +01:00
mlorb
71e4cc4dbd
Merge branch 'master' into ml-sci-2940 2019-02-13 14:35:03 +01:00
Mojca Lorber
0adb8b2b61 Fix failing tests 2019-02-13 14:31:26 +01:00
Mojca Lorber
5825c7120d fix falling test 2019-02-13 11:49:01 +01:00
Alex Kriuchykhin
b71c9d96a2
Merge pull request #1476 from okriuchykhin/ok_SCI_2944 
Add test for templates service [SCI-2944]
 2019-02-12 09:39:03 +01:00
Oleksii Kriuchykhin
acbbc1a9f8 Add comment [SCI-2944] 2019-02-11 13:40:25 +01:00
Oleksii Kriuchykhin
92b47a3034 Remove unneeded ordering [SCI-2967] 2019-02-07 11:23:40 +01:00
Jure Grabnar
c5780927a8 Change a test to work with multiple tests run at the same time 2019-02-06 22:07:54 +01:00
Jure Grabnar
6ae82401f3 Add test experiment.json file 2019-02-06 21:06:56 +01:00
Jure Grabnar
0fa403d6b0 Refactor tests fro experiment import 
Closes [SCI-2946]
 2019-02-06 14:27:43 +01:00
Jure Grabnar
55fdd201b2 Add additional checks 2019-02-05 14:27:42 +01:00
Jure Grabnar
0a3146fbe6 Add checking of experiment basics 2019-02-05 14:27:42 +01:00
Jure Grabnar
e180d5e100 Add test skeleton for importing 2019-02-05 14:27:42 +01:00
Oleksii Kriuchykhin
79c7bbbfb0 Fix failing tests with local file storage [SCI-2944] 2019-02-04 13:50:38 +01:00
Oleksii Kriuchykhin
19f1585352 Add test for templates service [SCI-2944] 2019-02-01 18:06:36 +01:00
Urban Rotnik
8ebb7561d9 Add last_time_changed_at columnd to SystemNotifications 2019-01-31 16:44:20 +01:00
Urban Rotnik
6f7fcb0831 Refactor method clone_experiment_as_template into service object 
[SCI-2925]
 2019-01-31 07:13:40 +01:00
Oleksii Kriuchykhin
cc92de3726 Merge latest features/templates [SCI-2939] 2019-01-30 10:43:54 +01:00
Urban Rotnik
3e2c9934d0 Add SystemNotification model 
- SystemNotifiction model with spec
- UserSystemNotification model for many-many association
 2019-01-29 11:40:26 +01:00
Urban Rotnik
4cf12d12d1 Refactor 'move_experiment' method into service object 
Jira Ticket: SCI-2926
 2019-01-28 11:45:36 +01:00
Oleksii Kriuchykhin
05edfae766 Fix failing tests [SCI-2939] 2019-01-25 14:13:00 +01:00
Urban Rotnik
247bae8a9f Refactor export_all_counter increasing/reseting logic 
- Remove daily task
- Add method to user Model
 2019-01-25 11:16:31 +01:00
Oleksii Kriuchykhin
bd2efa55ac Add templates business logic [SCI-2939] 2019-01-25 10:55:08 +01:00
Urban Rotnik
f1d59e65f3 Add module and rename service object 2019-01-18 16:56:33 +01:00
Urban Rotnik
b41dc0a4d5 Specs for workflow_image_fenerator 
fix SCI-2924
 2019-01-18 16:56:33 +01:00
Urban Rotnik
d738169120 Refactor FactoryBot factories 2019-01-18 16:56:33 +01:00
Urban Rotnik
47cc6a9d10 Refactor workflow_image_generation and move to service class 2019-01-18 16:56:33 +01:00
Alex Kriuchykhin
c2b38af91e
Merge pull request #1439 from okriuchykhin/ok_SCI_2888 
Rename CORE_API_V1_PREVIEW env. variable to CORE_API_V1_ENABLED [SCI-2888]
 2019-01-10 11:05:07 +01:00
Oleksii Kriuchykhin
6a64b23f90 Rename CORE_API_V1_PREVIEW env. variable to CORE_API_V1_ENABLED [SCI-2888] 2019-01-04 10:44:38 +01:00
Oleksii Kriuchykhin
311189a2e9 Replace reports materialized view with normal queries and re-enable fragment caching [SCI-2894] 2018-12-13 11:18:09 +01:00
Jure Grabnar
13bc664902
Merge pull request #1367 from jbargu/jg_2746_health_unit_tests 
Add unit tests for status/health API endpoints
 2018-11-19 13:14:38 +01:00
Luka Murn
e9c0b34662 Merge branch 'core-api' into 'master' 
Conflicts:
	Gemfile
	app/services/api.rb
	config/initializers/api.rb
	config/initializers/extends.rb
	config/routes.rb
	db/schema.rb
	spec/controllers/api/api_controller_spec.rb
 2018-11-14 16:59:04 +01:00
Jure Grabnar
7a320ae031 Update formating according to Hound 2018-11-12 17:51:23 +01:00
Jure Grabnar
1c08aa6a8b Add unit tests for status/health API endpoints 
Closes [SCI-2746].
 2018-11-12 17:17:47 +01:00
Oleksii Kriuchykhin
23ee4760ae Fix failing tests [SCI-2773] 2018-11-07 16:39:00 +01:00
Oleksii Kriuchykhin
30885e060d Merge latest core-api branch [SCI-2773] 2018-11-07 15:53:21 +01:00
Matej Zrimšek
2f6a6072e1 Fix repository ZIP export test to work with enabled workers [SCI-2646] 2018-11-07 06:14:40 +01:00
Matej Zrimšek
8fe0249f45 Fix test for repository ZIP export & return path for ZIP exports [SCI-2646] 2018-11-07 05:04:29 +01:00
Alex Kriuchykhin
b2f87561fe
Merge pull request #1335 from okriuchykhin/ok_SCI_2749 
Add tests for CREATE Result endpoint [SCI-2749]
 2018-10-30 09:43:45 +01:00
Alex Kriuchykhin
2f466383a5
Merge pull request #1333 from okriuchykhin/ok_SCI_2742 
RESTful API for Object Querying (READ) - unit tests [SCI-2742]
 2018-10-29 16:26:58 +01:00
Oleksii Kriuchykhin
04ff5870af Rename user_id to sub in JWT [SCI-2814] 2018-10-28 14:34:51 +01:00
Matej Zrimšek
4bb05040d6 Fix tests for project controller to work with changed code [SCI-2732] 2018-10-23 22:24:57 +02:00
Matej Zrimšek
17712f5142 Minor tests refactoring [SCI-2732] 2018-10-23 22:24:57 +02:00
Matej Zrimšek
98009939d1 Fix tests for project services to work with changed code [SCI-2732] 2018-10-23 22:24:57 +02:00
Matej Zrimšek
1c43077a5e Add visibility check to tests (redundant in most cases, but safer) [SCI-2732] 2018-10-23 19:51:50 +02:00
Matej Zrimšek
173ebdcf87 Fix some tests wich falsely passed locally; Some description refactoring [SCI-2732] 2018-10-23 19:51:50 +02:00
Matej Zrimšek
1be952fdbb Fix context block for ProjectsOverviewService#projects_datatable test with { filter: 'archived' } parameter 2018-10-23 19:51:50 +02:00
Matej Zrimšek
4bf1d904b7 Add project controller unit tests [SCI-2732] 2018-10-23 19:51:50 +02:00
Matej Zrimšek
e5129160fe Use the previous way of handling request params in rspec [SCI-2732] 2018-10-23 19:51:50 +02:00
Matej Zrimšek
d9281b66d5 Add test for sorting by column and order for ProjectsOverviewService#projects_datatable 2018-10-23 19:51:50 +02:00
Matej Zrimšek
5ea4a2ced3 Refactor ProjectsOverviewService tests to be request parameter friendly and hence more readable 2018-10-23 19:51:50 +02:00
Matej Zrimšek
b982ffe7c8 Improve & refactor #project_cards, add #projects_datatable tests for ProjectsOverviewService 2018-10-23 19:51:50 +02:00
Matej Zrimšek
2794f75215 Add ProjectsOverviewService#project_cards unit tests 2018-10-23 19:50:06 +02:00
Oleksii Kriuchykhin
b53f2c8347 Improve error messages in API [SCI-2773] 2018-10-23 17:52:48 +02:00
Oleksii Kriuchykhin
95cb6db4df Fix test [SCI-2733] 2018-10-19 10:47:55 +02:00
Oleksii Kriuchykhin
c2e36580ce Add tests for CREATE Result endpoint [SCI-2749] 2018-10-17 14:17:16 +02:00
Alex Kriuchykhin
18b1cad8a4
Merge pull request #1334 from okriuchykhin/ok_SCI_2772 
Implement inventory column data type name mappings [SCI-2772]
 2018-10-17 10:37:23 +02:00
Oleksii Kriuchykhin
b833ff6616 Rename MyModule serializer in tests [SCI-2742] 2018-10-16 17:45:29 +02:00
Oleksii Kriuchykhin
e4e66d3e5d Merge branch 'core-api' into ok_SCI_2742 2018-10-16 17:38:30 +02:00
Oleksii Kriuchykhin
02f536cd08 Merge latest features/export-all [SCI-2733] 2018-10-16 17:20:19 +02:00
Oleksii Kriuchykhin
ed46115b3f Implement inventory column data type name mappings [SCI-2772] 2018-10-16 15:35:02 +02:00
Oleksii Kriuchykhin
f6b039d54e Merge latest core-api branch [SCI-2765] 2018-10-16 12:07:47 +02:00
Jure Grabnar
d50f56e319 Disable/enable export proejct button 
Fix filesystem saving
 2018-10-16 11:01:58 +02:00
Oleksii Kriuchykhin
0db9ef44e2 Add experiment, task, result READ endpoints tests [SCI-2742] 2018-10-15 16:27:22 +02:00
Luka Murn
1093ea11f4 Merge branch 'lm-api-fixes' of https://github.com/Ducz0r/scinote-web into Ducz0r-lm-api-fixes 
Conflicts:
	app/serializers/api/v1/activity_serializer.rb
	app/serializers/api/v1/inventory_column_serializer.rb
	app/serializers/api/v1/project_serializer.rb
 2018-10-15 15:20:26 +02:00
Oleksii Kriuchykhin
dd17f1d5ad Add project READ endpoints [SCI-2742] 2018-10-12 17:43:36 +02:00
Luka Murn
2b7a94025e
Merge pull request #1320 from biosistemika/lm-mc-sci-2697 
UPDATE Inventory item endpoint - unit tests [SCI-2697] (v2)
 2018-10-11 15:20:37 +02:00
Luka Murn
028c0c6832 Remove 2 obsolete unit tests 2018-10-11 14:41:13 +02:00
Luka Murn
33b9c65c29 Fix Hound 2018-10-11 14:27:52 +02:00
Luka Murn
1e46631c02
Merge pull request #1316 from czbiohub/mc-SCI-2700 
close sci-2700; add unit tests for inventory column update [SCI-2700]
 2018-10-11 10:20:15 +02:00
Oleksii Kriuchykhin
af02f29fb5 Implement user state saving for projects overview [SCI-2733] 2018-10-10 16:15:31 +02:00
Oleksii Kriuchykhin
77e2371091 Add tests for inventory cell endpoints [SCI-2765] 2018-10-08 13:25:03 +02:00
Luka Murn
a8d56d32e2 Hound is love, Hound is life 2018-10-07 13:28:29 +02:00
Luka Murn
0bd3c81e39 Fix /users, /users/:id/identities endpoints 2018-10-07 13:07:27 +02:00
Luka Murn
d235dd7807 Update GET /inventory_items, GET /inventory_items/:id endpoints 2018-10-06 18:37:40 +02:00
Luka Murn
6625b4019e Update GET /inventory_columns, GET /inventory_columns/:id endpts 2018-10-06 13:47:41 +02:00
Luka Murn
7b5a65416a Update status endpoint 2018-10-06 11:47:23 +02:00
Oleksii Kriuchykhin
ed7c88f94d Improve tests [SCI-2741] 2018-10-04 12:00:50 +02:00
Oleksii Kriuchykhin
363c1e4a34 Add endpoints for managing inventory list items [SCI-2741] 2018-10-03 13:54:52 +02:00
Luka Murn
2dc09f080d Revert "Revert "Merge branch 'mc-SC-2697' of https://github.com/czbiohub/scinote-web-1 into core-api"" 
This reverts commit 7ef85a9b60.
 2018-10-01 14:59:06 +02:00
Luka Murn
7ef85a9b60 Revert "Merge branch 'mc-SC-2697' of https://github.com/czbiohub/scinote-web-1 into core-api" 
This reverts commit 870dda255c, reversing
changes made to 2ac6563730.
 2018-10-01 14:41:18 +02:00
Luka Murn
548cfb65e1 Merge branch 'mc-SCI-2704' of https://github.com/czbiohub/scinote-web-1 into czbiohub-mc-SCI-2704 
Conflicts:
	spec/requests/api/v1/inventories_controller_spec.rb
 2018-10-01 11:53:47 +02:00
Luka Murn
bf59276afd Merge branch 'mc-SC-2703' of https://github.com/czbiohub/scinote-web-1 into czbiohub-mc-SC-2703 
Conflicts:
	spec/requests/api/v1/inventories_controller_spec.rb
 2018-10-01 11:41:29 +02:00
Luka Murn
870dda255c Merge branch 'mc-SC-2697' of https://github.com/czbiohub/scinote-web-1 into core-api 
Conflicts:
	spec/requests/api/v1/inventory_items_controller_spec.rb
 2018-10-01 09:20:58 +02:00
Luka Murn
2ac6563730
Merge pull request #1295 from czbiohub/mc-SCI-2702 
close SCI-2702; unit tests for create inventory [SCI-2702]
 2018-10-01 09:08:39 +02:00
Michael
2f99904000 merge core-api and handle merge issues 2018-09-27 10:43:52 -07:00
Michael
088e06cae7 fix check to inventory 2018-09-26 10:47:13 -07:00
Luka Murn
07c8c448d5 Fix codestyle 2018-09-26 18:30:07 +02:00
Luka Murn
46883150d1 Merge branch 'mc-SCI-2696' of https://github.com/czbiohub/scinote-web-1 into czbiohub-mc-SCI-2696 
Conflicts:
	spec/requests/api/v1/inventory_items_controller_spec.rb
 2018-09-26 18:16:25 +02:00
Luka Murn
d0d0939afd Move @valid_headers content type to global @valid_headers def 2018-09-26 18:13:10 +02:00
Luka Murn
39dafd2179 Merge branch 'mc-SC-2701' of https://github.com/czbiohub/scinote-web-1 into czbiohub-mc-SC-2701 
Conflicts:
	spec/requests/api/v1/inventory_columns_controller_spec.rb
 2018-09-24 16:40:44 +02:00
Oleksii Kriuchykhin
49e788a9ad Mergre latest core-api [SCI-2515] 2018-09-14 10:24:05 +02:00
Luka Murn
3b3d682ab2
Merge pull request #1294 from czbiohub/mc-SCI-2699 
add unit tests for Create inventory_column endpoint [SCI-2699]
 2018-09-12 15:39:18 +02:00
Luka Murn
8e376a0293 Hound is love, Hound is life. 2018-09-12 13:47:52 +02:00
Luka Murn
0b68a670c2 Fix the inventory_columns_controller#create action 
Based on unit tests, fix the create inventory columns endpoint
to work as intended. Also add another unit test case.
 2018-09-12 13:44:10 +02:00
Michael
9fab092c31 remove funky symbol 2018-09-11 09:55:38 -07:00
Michael
4b41cc9566 close mc-SC-2703; unit tests for DELETE inventory endpoints 2018-09-09 14:58:56 -07:00
Michael
f9f9bcac9f same changes to update unite tests 2018-09-09 14:03:56 -07:00
Michael
849a147756 failing tests for update, to_i doesn't work with updated changes 2018-09-09 14:02:22 -07:00
Michael
beff430b61 unit tests for DELETE inventory [SCI-2704] 2018-09-09 13:37:26 -07:00
Michael
e2c10e973d close mc-SC-2701; DELETE inventory column endpoint unit tests 2018-09-09 13:15:54 -07:00
Michael
43a3c1c06b close SCI-2702; unit tests for create inventory 2018-09-09 13:02:42 -07:00